TCONS_00071210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071210
Unique NameTCONS_00071210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071210 ID=TCONS_00071210|Name=TCONS_00071210|organism=Clytia hemisphaerica|type=transcript|length=764bp
gaccagtatgcatcaaacttctcataaatcatgtccaaaacatcatgaat
aatgatgaaaatgatatctttcactgagatttgcagcAAGCCCACTTTCG
GCAACCATCTTATACTTTCgcaatattatcgaaatccaaataatccgttt
ttattaaatcggaatagatcatcggattagataaacaaaaaaaaatgtct
tgaccttgAACGTCGTtgttgtcggaagagagaattaaaggctcctaggc
cggagcaattagGCGCTTACAAAGATTTCTACAATCTTCTGCAAAATATC
ATGAGACACCTTGCAAATATAGCAAATTTAAGATCCCCCCTCCCCCAAAA
CAATGTTGAGTGCAGTAACAGCTTGATTCCATAAACAACATTGTTTTGGG
GGAGGGGGGTTGCTTTTTTGTAAAGTGTCTCACATATTTTGCAAAAGATT
GTAGGTGGAAACCGTaaagattttcaagttttatattCACTGAAATATAG
TTCATGCActtatttagaaaaatattataaaacatCCCTGTAGTTGACaa
ataactttttcaaatattccAATTTTAGGTCAAAACGCATGAGATTGAGG
ACTCTTAGATTTTggtaatgtttttgaaaaggtATGGGGACAATAAAAAA
GGTTTCCAAACTCTGAGGGGGGGGGTGGTTAAAATTGAGCAACCAAATGA
CTCATAGGACACCATGTCTCAATCTAACACAGACAACTTAATGAATTTAC
ATCGAGGGGTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_6:315024..315787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071210 ID=TCONS_00071210|Name=TCONS_00071210|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at scaffold_6:315024..315787 (Clytia hemisphaerica)
ATTTACCCCTCGATGTAAATTCATTAAGTTGTCTGTGTTAGATTGAGACA
TGGTGTCCTATGAGTCATTTGGTTGCTCAATTTTAACCACCCCCCCCCTC
AGAGTTTGGAAACCTTTTTTATTGTCCCCATaccttttcaaaaacattac
cAAAATCTAAGAGTCCTCAATCTCATGCGTTTTGACCTAAAATTggaata
tttgaaaaagttatttGTCAACTACAGGGatgttttataatatttttcta
aataagTGCATGAACTATATTTCAGTGaatataaaacttgaaaatctttA
CGGTTTCCACCTACAATCTTTTGCAAAATATGTGAGACACTTTACAAAAA
AGCAACCCCCCTCCCCCAAAACAATGTTGTTTATGGAATCAAGCTGTTAC
TGCACTCAACATTGTTTTGGGGGAGGGGGGATCTTAAATTTGCTATATTT
GCAAGGTGTCTCATGATATTTTGCAGAAGATTGTAGAAATCTTTGTAAGC
GCctaattgctccggcctaggagcctttaattctctcttccgacaacaAC
GACGTTcaaggtcaagacatttttttttgtttatctaatccgatgatcta
ttccgatttaataaaaacggattatttggatttcgataatattgcGAAAG
TATAAGATGGTTGCCGAAAGTGGGCTTgctgcaaatctcagtgaaagata
tcattttcatcattattcatgatgttttggacatgatttatgagaagttt
gatgcatactggtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044266XLOC_044266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071210-exon-scaffold_6-1491911889:315024..315787TCONS_00071210-exon-scaffold_6-1491911889:315024..315787Clytia hemisphaericaexon
TCONS_00071210-exon-scaffold_6-1510915933:315024..315787TCONS_00071210-exon-scaffold_6-1510915933:315024..315787Clytia hemisphaericaexon
TCONS_00071210-exon-scaffold_6-1575043694:315024..315787TCONS_00071210-exon-scaffold_6-1575043694:315024..315787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:315024..315787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.25969	4.22884	7.39251	8.14799	12.5953	9.6279	12.2956	11.45	4.12	4.36901	4.2357	4.91652	3.53547	5.13508	3.59171	2.9356	2.61865	3.06537	4.0782	3.68638	3.12195	5.69248	2.37505	2.70419	4.16481	9.92509	5.60555	4.36667	5.93611	5.43887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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