TCONS_00071209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071209
Unique NameTCONS_00071209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071209 ID=TCONS_00071209|Name=TCONS_00071209|organism=Clytia hemisphaerica|type=transcript|length=249bp
GTTTGCTTTGGGCAAAGGATGTCCCAAAACTTGAAGACGGAAAAGAAAAG
TATATTGAACACATAGATAGTGTTGTTTCTGTTAATGTTCCTGATAGAGA
AGAAAGTCCTGAATTATGGAATTTAGTCACTAAATATCAAATACACTCCC
ATTCAAGAACGTGTagtaaatatcgcaaaaatgaatgccgatttcaattt
ggaaaacttttctgCAAGCGTACTATTTTGTCTGAACCGCTTCCTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_6:305855..306103

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071209 ID=TCONS_00071209|Name=TCONS_00071209|organism=Clytia hemisphaerica|type=transcript|length=249bp|location=Sequence derived from alignment at scaffold_6:305855..306103 (Clytia hemisphaerica)
CTTCAGGAAGCGGTTCAGACAAAATAGTACGCTTGcagaaaagttttcca
aattgaaatcggcattcatttttgcgatatttactACACGTTCTTGAATG
GGAGTGTATTTGATATTTAGTGACTAAATTCCATAATTCAGGACTTTCTT
CTCTATCAGGAACATTAACAGAAACAACACTATCTATGTGTTCAATATAC
TTTTCTTTTCCGTCTTCAAGTTTTGGGACATCCTTTGCCCAAAGCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044265XLOC_044265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071209-exon-scaffold_6-1491911889:305855..306103TCONS_00071209-exon-scaffold_6-1491911889:305855..306103Clytia hemisphaericaexon
TCONS_00071209-exon-scaffold_6-1510915933:305855..306103TCONS_00071209-exon-scaffold_6-1510915933:305855..306103Clytia hemisphaericaexon
TCONS_00071209-exon-scaffold_6-1575043694:305855..306103TCONS_00071209-exon-scaffold_6-1575043694:305855..306103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:305855..306103 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.90636	1.86947	10.1318	1.6184	14.1677	14.2317	10.1238	13.9552	3.54388	1.40688	0	1.71441	2.94535	0	0.583592	3.37057	0	1.91374	2.49303	1.94511	3.84079	3.76814	0.681864	2.60264	9.70678	10.7847	4.8142	2.97493	1.04884	4.39399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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