TCONS_00071205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071205
Unique NameTCONS_00071205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071205 ID=TCONS_00071205|Name=TCONS_00071205|organism=Clytia hemisphaerica|type=transcript|length=335bp
GCCAGGTCCAGGCAAGGCACTCAGCAGAGCAGGGTAATGAACTGATGATA
GGACATATACTAGCTGTAGAATTCTTCAAAAAACGAATTTTACACCCCGA
AGGATATGAAAACGCTCCACCCGAACAAACTAACAATCTAAAGTATGAAA
GACAGTCTAAAGTTAAATACGACATTACCTGTTGAGAAAGTGGGCGTCGA
TCAATTTGAAGTTTGGTGAGCTTTGACCGAGGTACTNctttggcttaagt
gcttgagtgcagcataagggtacaaagtccaaatatgcgtttcccgtaat
ttttgtatgaagagttaggtctatactgtttgtga
Run BLAST on NCBI

transcript from alignment at scaffold_6:286703..287037

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071205 ID=TCONS_00071205|Name=TCONS_00071205|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_6:286703..287037 (Clytia hemisphaerica)
tcacaaacagtatagacctaactcttcatacaaaaattacgggaaacgca
tatttggactttgtacccttatgctgcactcaagcacttaagccaaagNA
GTACCTCGGTCAAAGCTCACCAAACTTCAAATTGATCGACGCCCACTTTC
TCAACAGGTAATGTCGTATTTAACTTTAGACTGTCTTTCATACTTTAGAT
TGTTAGTTTGTTCGGGTGGAGCGTTTTCATATCCTTCGGGGTGTAAAATT
CGTTTTTTGAAGAATTCTACAGCTAGTATATGTCCTATCATCAGTTCATT
ACCCTGCTCTGCTGAGTGCCTTGCCTGGACCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044261XLOC_044261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071205-exon-scaffold_6-1491911889:286703..287037TCONS_00071205-exon-scaffold_6-1491911889:286703..287037Clytia hemisphaericaexon
TCONS_00071205-exon-scaffold_6-1510915933:286703..287037TCONS_00071205-exon-scaffold_6-1510915933:286703..287037Clytia hemisphaericaexon
TCONS_00071205-exon-scaffold_6-1575043694:286703..287037TCONS_00071205-exon-scaffold_6-1575043694:286703..287037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:286703..287037 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
406.967	446.56	383.953	449.199	1.21543	2.26103	2.24055	1.41467	30.3974	21.3319	22.6542	32.8226	11.0249	13.591	20.8551	17.5833	19.5853	26.9154	25.7736	31.668	118.502	110.814	262.744	216.242	0.325483	1.8353	141.244	117.341	134.6	155.511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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