TCONS_00071201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071201
Unique NameTCONS_00071201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071201 ID=TCONS_00071201|Name=TCONS_00071201|organism=Clytia hemisphaerica|type=transcript|length=456bp
GCTAAATCTTCATGATGCACCGGCCTTGCAAGTACACCGCGCGGGTATGC
GCGGGCAAAATATTGTGCGCGTAAGCGCACAGGCGAGCGCAGCGTTTTGT
TAGGGATAGGCAGCATCCCTGCTCATCCCTAACATGCACCCAGACGGATG
TGCACCCTCCCGGTGGTGCACCCGTGTGTGGGGTCTTCCTGGAGGAATAG
CgatcataacagttagcctaactcgtgaGGTCTGTTCACCCGTATATACT
ATATATGTCACTCTATAAATAACCTTGAATTTCGGAAAAGTAGCAGCCGT
CGTGGCCCAGTGGTATAGACTACGTGTTTCGTAATCGGAAACATGTAGGT
TCGAACCGGGGTAAagtattgaaaagtttcaaaaaattttctaagtctCC
GTGCTTGTCGGTGCATCATGAAGATTTAGCCATAGGTGAACATTGTATGT
AAGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_6:193543..193998

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071201 ID=TCONS_00071201|Name=TCONS_00071201|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_6:193543..193998 (Clytia hemisphaerica)
CTTCTTACATACAATGTTCACCTATGGCTAAATCTTCATGATGCACCGAC
AAGCACGGagacttagaaaattttttgaaacttttcaatactTTACCCCG
GTTCGAACCTACATGTTTCCGATTACGAAACACGTAGTCTATACCACTGG
GCCACGACGGCTGCTACTTTTCCGAAATTCAAGGTTATTTATAGAGTGAC
ATATATAGTATATACGGGTGAACAGACCtcacgagttaggctaactgtta
tgatcGCTATTCCTCCAGGAAGACCCCACACACGGGTGCACCACCGGGAG
GGTGCACATCCGTCTGGGTGCATGTTAGGGATGAGCAGGGATGCTGCCTA
TCCCTAACAAAACGCTGCGCTCGCCTGTGCGCTTACGCGCACAATATTTT
GCCCGCGCATACCCGCGCGGTGTACTTGCAAGGCCGGTGCATCATGAAGA
TTTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044257XLOC_044257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071201-exon-scaffold_6-1491911889:193543..193998TCONS_00071201-exon-scaffold_6-1491911889:193543..193998Clytia hemisphaericaexon
TCONS_00071201-exon-scaffold_6-1510915933:193543..193998TCONS_00071201-exon-scaffold_6-1510915933:193543..193998Clytia hemisphaericaexon
TCONS_00071201-exon-scaffold_6-1575043694:193543..193998TCONS_00071201-exon-scaffold_6-1575043694:193543..193998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:193543..193998 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40918	2.4266	1.76932	4.79659	0.64129	0.749077	0.600347	0.623545	2.80136	1.91343	0.814519	2.46827	1.41878	0.313991	1.4446	0.901322	0.564098	1.08445	1.02742	1.37118	1.52595	0.725073	0.564384	0	2.63987	3.02149	1.17263	1.51556	0	0.381423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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