TCONS_00071199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071199
Unique NameTCONS_00071199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071199 ID=TCONS_00071199|Name=TCONS_00071199|organism=Clytia hemisphaerica|type=transcript|length=333bp
CCTgctgaaatcaagaaaattaaagaaatggCATCTTGGAATGGCTTTCC
TAAATACCTCGTCAACTCTTTAAGTAAATGTTTTATTTAGAATTTATCGA
CCCCTCGTTCATCGGCTTTGAATGAAGACCCTGTTGAAGAATCTGTCGTA
ATTTGGTTTCACAACCCTTACCTTGGAAGTAGAAGTCTTAGTAATTTTCT
AGCTTGTGTTAAGAAAATTAAACGTAATTTGAATCTTGGatcaaagaaaa
tcatttttaagcaaagattTAAGACTACCAAAATCAGCTATTATTGCAAT
ACCAAAGATCGCTCGCCTTTGCTTACCTCTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_6:169038..169370

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071199 ID=TCONS_00071199|Name=TCONS_00071199|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at scaffold_6:169038..169370 (Clytia hemisphaerica)
GGAAGAGGTAAGCAAAGGCGAGCGATCTTTGGTATTGCAATAATAGCTGA
TTTTGGTAGTCTTAaatctttgcttaaaaatgattttctttgatCCAAGA
TTCAAATTACGTTTAATTTTCTTAACACAAGCTAGAAAATTACTAAGACT
TCTACTTCCAAGGTAAGGGTTGTGAAACCAAATTACGACAGATTCTTCAA
CAGGGTCTTCATTCAAAGCCGATGAACGAGGGGTCGATAAATTCTAAATA
AAACATTTACTTAAAGAGTTGACGAGGTATTTAGGAAAGCCATTCCAAGA
TGccatttctttaattttcttgatttcagcAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044255XLOC_044255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071199-exon-scaffold_6-1491911889:169038..169370TCONS_00071199-exon-scaffold_6-1491911889:169038..169370Clytia hemisphaericaexon
TCONS_00071199-exon-scaffold_6-1510915933:169038..169370TCONS_00071199-exon-scaffold_6-1510915933:169038..169370Clytia hemisphaericaexon
TCONS_00071199-exon-scaffold_6-1575043694:169038..169370TCONS_00071199-exon-scaffold_6-1575043694:169038..169370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:169038..169370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165725	0	0.625969	0	0.432266	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.521125	2.70568	0	0.293554	0.252982	0	0.317554	0.281011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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