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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071198 ID=TCONS_00071198|Name=TCONS_00071198|organism=Clytia hemisphaerica|type=transcript|length=850bp
CACCATGTGAATGCCCCAAAAGATCGCAATGCCCACCTACGCCAGAGAAA
ATCCCCTTCCCAGCGACAGAGGATCACATAGACTCACTAGAACAGTGGAT
AAAAGAACAATATGCAAGTAGTGCTTTCAACGTATGCCCGCATCAACCAC
TTCAAGCTATGACGGGAGAACCCTTAAAAATATCGTTCATCCCAAACTAT
GAACCATCTGCCGCCCACAAACCCATCCCTGTGCCTCACCATTGGAAATA
TGAGGTCAAAAGCCAATTAGACGCAGATGTAGCCCTAGGGATCATTGAAC
CAGTACTACAAGGAACCCCCACGACTTGGTGTTCACGCATGATCGTCGTA
CCAAAGAAAGATGGCACCCCTCGACGAACTGTAGACCTCCAAAAAGCAAA
CAAGGTCACACATCGCGAAATCCATCACACACCCTCGCCATTCAATATCG
TTAGTGGTATACCGTCGGAAAAGAAAAAGACAGTACTAGACGCATGGAAC
GGTTACCATAGTATGCCACTGTCGCCAGAGGCTCGAAACGCAACCACCTT
TATTACTGAATGGGGTCGATATCGCTATTTGCGAGCCCTGCAAGGTTTCC
ACGCATCGAGCGACGGCTATACCAAGCGATTCGACGACATTACAACTGGT
TTTCCCCGGGTGGCACGATGTATAGACGATTCGTTGCTCTGGGATGATGA
TATATCCAAGTCATTCTGGCACACAATCTCGTACATTGAACTGTGTAGTC
GAAACGGTATAGTATTCAACCCAAAGAAGTTCCATTTCTGCAAGGATACT
GTAGAATTCGCCGGCTTCGACATGACAACTGTTGGATTTAAACCGGCGGG Run BLAST on NCBI protein sequence of TCONS_00071198-protein >TCONS_00071198-protein ID=TCONS_00071198-protein|Name=TCONS_00071198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
PCECPKRSQCPPTPEKIPFPATEDHIDSLEQWIKEQYASSAFNVCPHQPL
QAMTGEPLKISFIPNYEPSAAHKPIPVPHHWKYEVKSQLDADVALGIIEP
VLQGTPTTWCSRMIVVPKKDGTPRRTVDLQKANKVTHREIHHTPSPFNIV
SGIPSEKKKTVLDAWNGYHSMPLSPEARNATTFITEWGRYRYLRALQGFH
ASSDGYTKRFDDITTGFPRVARCIDDSLLWDDDISKSFWHTISYIELCSR
NGIVFNPKKFHFCKDTVEFAGFDMTTVGFKPA Run BLAST on NCBI transcript from alignment at scaffold_6:154726..155575 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071198 ID=TCONS_00071198|Name=TCONS_00071198|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_6:154726..155575 (Clytia hemisphaerica)
CCCGCCGGTTTAAATCCAACAGTTGTCATGTCGAAGCCGGCGAATTCTAC
AGTATCCTTGCAGAAATGGAACTTCTTTGGGTTGAATACTATACCGTTTC
GACTACACAGTTCAATGTACGAGATTGTGTGCCAGAATGACTTGGATATA
TCATCATCCCAGAGCAACGAATCGTCTATACATCGTGCCACCCGGGGAAA
ACCAGTTGTAATGTCGTCGAATCGCTTGGTATAGCCGTCGCTCGATGCGT
GGAAACCTTGCAGGGCTCGCAAATAGCGATATCGACCCCATTCAGTAATA
AAGGTGGTTGCGTTTCGAGCCTCTGGCGACAGTGGCATACTATGGTAACC
GTTCCATGCGTCTAGTACTGTCTTTTTCTTTTCCGACGGTATACCACTAA
CGATATTGAATGGCGAGGGTGTGTGATGGATTTCGCGATGTGTGACCTTG
TTTGCTTTTTGGAGGTCTACAGTTCGTCGAGGGGTGCCATCTTTCTTTGG
TACGACGATCATGCGTGAACACCAAGTCGTGGGGGTTCCTTGTAGTACTG
GTTCAATGATCCCTAGGGCTACATCTGCGTCTAATTGGCTTTTGACCTCA
TATTTCCAATGGTGAGGCACAGGGATGGGTTTGTGGGCGGCAGATGGTTC
ATAGTTTGGGATGAACGATATTTTTAAGGGTTCTCCCGTCATAGCTTGAA
GTGGTTGATGCGGGCATACGTTGAAAGCACTACTTGCATATTGTTCTTTT
ATCCACTGTTCTAGTGAGTCTATGTGATCCTCTGTCGCTGGGAAGGGGAT
TTTCTCTGGCGTAGGTGGGCATTGCGATCTTTTGGGGCATTCACATGGTG
Coding sequence (CDS) from alignment at scaffold_6:154726..155575 >TCONS_00071198 ID=TCONS_00071198|Name=TCONS_00071198|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_6:154726..155575 (Clytia hemisphaerica)
CGCCGGTTTAAATCCAACAGTTGTCATGTCGAAGCCGGCGAATTCTACAG
TATCCTTGCAGAAATGGAACTTCTTTGGGTTGAATACTATACCGTTTCGA
CTACACAGTTCAATGTACGAGATTGTGTGCCAGAATGACTTGGATATATC
ATCATCCCAGAGCAACGAATCGTCTATACATCGTGCCACCCGGGGAAAAC
CAGTTGTAATGTCGTCGAATCGCTTGGTATAGCCGTCGCTCGATGCGTGG
AAACCTTGCAGGGCTCGCAAATAGCGATATCGACCCCATTCAGTAATAAA
GGTGGTTGCGTTTCGAGCCTCTGGCGACAGTGGCATACTATGGTAACCGT
TCCATGCGTCTAGTACTGTCTTTTTCTTTTCCGACGGTATACCACTAACG
ATATTGAATGGCGAGGGTGTGTGATGGATTTCGCGATGTGTGACCTTGTT
TGCTTTTTGGAGGTCTACAGTTCGTCGAGGGGTGCCATCTTTCTTTGGTA
CGACGATCATGCGTGAACACCAAGTCGTGGGGGTTCCTTGTAGTACTGGT
TCAATGATCCCTAGGGCTACATCTGCGTCTAATTGGCTTTTGACCTCATA
TTTCCAATGGTGAGGCACAGGGATGGGTTTGTGGGCGGCAGATGGTTCAT
AGTTTGGGATGAACGATATTTTTAAGGGTTCTCCCGTCATAGCTTGAAGT
GGTTGATGCGGGCATACGTTGAAAGCACTACTTGCATATTGTTCTTTTAT
CCACTGTTCTAGTGAGTCTATGTGATCCTCTGTCGCTGGGAAGGGGATTT
TCTCTGGCGTAGGTGGGCATTGCGATCTTTTGGGGCATTCACATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071198-exon-scaffold_6-1491911889:154726..155575 | TCONS_00071198-exon-scaffold_6-1491911889:154726..155575 | Clytia hemisphaerica | exon |
| TCONS_00071198-exon-scaffold_6-1510915933:154726..155575 | TCONS_00071198-exon-scaffold_6-1510915933:154726..155575 | Clytia hemisphaerica | exon |
| TCONS_00071198-exon-scaffold_6-1575043694:154726..155575 | TCONS_00071198-exon-scaffold_6-1575043694:154726..155575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:154726..155575 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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