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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071196 ID=TCONS_00071196|Name=TCONS_00071196|organism=Clytia hemisphaerica|type=transcript|length=817bp
CTTTGAATCAGATTTAAGTCAAGagataatattttgaagattttctgaac
aaatttatatttatttttcactttcttatCTCAGGCCACCTATGAGCTGG
ACAGCTCAACACGAGGAGATGCTGTTATGTGAGATTTTGACATGGGAACC
ATTCAACCATAAGTTGGGTAGTACGGGTCGAGGAGAGTCCTGGAAAATGA
TTGCCGAAACCTTGAATTCATTGGACACTCCCAAGTTCACTGTTACACAC
CGTTCTGTCCGCGAAAAATATgcaaatttagaaaaagaacACAAAAAGAA
AATGGCCGATGAGGAGAGAGCATCAGGTGACAGCCCAGAGGGCTTGACAG
ATAAAGAGAAAGCCTTGGATGAAATCGTTCAACGATTTGCGGATATTGAG
CTTTCTACTGAGAAAAATCGTCAAGTTTCTGCAAAAGCTATCGAAAAAGA
ACGTGCAAGTGCAGTTGAAGTAAGGAAACAAGCAATGGAAACGTATTCTG
AAACGAAAAGACGAAGTGAAGACGAATCTCCTACTTCTAGTTCTAAAGGT
GGGAAAAGAAGGAGGTCCTCTGATGATACCATGCTCTACTTAAGAGACAA
AATGGAAATGGATAGGGCATTTCGTGACAGAGAACTGAAAATCGCTGAAA
CAAGGGAAAATACTATGCAACAACTTCTtgtacaacaacaacaacaaaac
caaGCCATGTTGGCTTTGCTTTTAAACCAGAACAATTCTGGTGCacaata
aaaaacttttaaagatttttaaccTTGTTTGTATtatgaaagttgaaaat
tttggattatattttac Run BLAST on NCBI protein sequence of TCONS_00071196-protein >TCONS_00071196-protein ID=TCONS_00071196-protein|Name=TCONS_00071196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MSWTAQHEEMLLCEILTWEPFNHKLGSTGRGESWKMIAETLNSLDTPKFT
VTHRSVREKYANLEKEHKKKMADEERASGDSPEGLTDKEKALDEIVQRFA
DIELSTEKNRQVSAKAIEKERASAVEVRKQAMETYSETKRRSEDESPTSS
SKGGKRRRSSDDTMLYLRDKMEMDRAFRDRELKIAETRENTMQQLLVQQQ
QQNQAMLALLLNQNNSGAQ Run BLAST on NCBI transcript from alignment at scaffold_6:150073..150889 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071196 ID=TCONS_00071196|Name=TCONS_00071196|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_6:150073..150889 (Clytia hemisphaerica)
gtaaaatataatccaaaattttcaactttcataATACAAACAAggttaaa
aatctttaaaagttttttattgtGCACCAGAATTGTTCTGGTTTAAAAGC
AAAGCCAACATGGCttggttttgttgttgttgttgtacaAGAAGTTGTTG
CATAGTATTTTCCCTTGTTTCAGCGATTTTCAGTTCTCTGTCACGAAATG
CCCTATCCATTTCCATTTTGTCTCTTAAGTAGAGCATGGTATCATCAGAG
GACCTCCTTCTTTTCCCACCTTTAGAACTAGAAGTAGGAGATTCGTCTTC
ACTTCGTCTTTTCGTTTCAGAATACGTTTCCATTGCTTGTTTCCTTACTT
CAACTGCACTTGCACGTTCTTTTTCGATAGCTTTTGCAGAAACTTGACGA
TTTTTCTCAGTAGAAAGCTCAATATCCGCAAATCGTTGAACGATTTCATC
CAAGGCTTTCTCTTTATCTGTCAAGCCCTCTGGGCTGTCACCTGATGCTC
TCTCCTCATCGGCCATTTTCTTTTTGTgttctttttctaaatttgcATAT
TTTTCGCGGACAGAACGGTGTGTAACAGTGAACTTGGGAGTGTCCAATGA
ATTCAAGGTTTCGGCAATCATTTTCCAGGACTCTCCTCGACCCGTACTAC
CCAACTTATGGTTGAATGGTTCCCATGTCAAAATCTCACATAACAGCATC
TCCTCGTGTTGAGCTGTCCAGCTCATAGGTGGCCTGAGataagaaagtga
aaaataaatataaatttgttcagaaaatcttcaaaatattatctCTTGAC
TTAAATCTGATTCAAAG Coding sequence (CDS) from alignment at scaffold_6:150073..150889 >TCONS_00071196 ID=TCONS_00071196|Name=TCONS_00071196|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_6:150073..150889 (Clytia hemisphaerica)
ttattgtGCACCAGAATTGTTCTGGTTTAAAAGCAAAGCCAACATGGCtt
ggttttgttgttgttgttgtacaAGAAGTTGTTGCATAGTATTTTCCCTT
GTTTCAGCGATTTTCAGTTCTCTGTCACGAAATGCCCTATCCATTTCCAT
TTTGTCTCTTAAGTAGAGCATGGTATCATCAGAGGACCTCCTTCTTTTCC
CACCTTTAGAACTAGAAGTAGGAGATTCGTCTTCACTTCGTCTTTTCGTT
TCAGAATACGTTTCCATTGCTTGTTTCCTTACTTCAACTGCACTTGCACG
TTCTTTTTCGATAGCTTTTGCAGAAACTTGACGATTTTTCTCAGTAGAAA
GCTCAATATCCGCAAATCGTTGAACGATTTCATCCAAGGCTTTCTCTTTA
TCTGTCAAGCCCTCTGGGCTGTCACCTGATGCTCTCTCCTCATCGGCCAT
TTTCTTTTTGTgttctttttctaaatttgcATATTTTTCGCGGACAGAAC
GGTGTGTAACAGTGAACTTGGGAGTGTCCAATGAATTCAAGGTTTCGGCA
ATCATTTTCCAGGACTCTCCTCGACCCGTACTACCCAACTTATGGTTGAA
TGGTTCCCATGTCAAAATCTCACATAACAGCATCTCCTCGTGTTGAGCTG
TCCAGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071196-exon-scaffold_6-1491911889:150073..150889 | TCONS_00071196-exon-scaffold_6-1491911889:150073..150889 | Clytia hemisphaerica | exon |
| TCONS_00071196-exon-scaffold_6-1510915933:150073..150889 | TCONS_00071196-exon-scaffold_6-1510915933:150073..150889 | Clytia hemisphaerica | exon |
| TCONS_00071196-exon-scaffold_6-1575043694:150073..150889 | TCONS_00071196-exon-scaffold_6-1575043694:150073..150889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:150073..150889 . |
Blast
The following BLAST results are available for this feature:
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