TCONS_00071188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071188
Unique NameTCONS_00071188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071188 ID=TCONS_00071188|Name=TCONS_00071188|organism=Clytia hemisphaerica|type=transcript|length=258bp
GTAAAACGGTATCAaatatttaaattattttactaGTGGAATAACTTATC
CTTTTCAATCTTTTCGAGGAAATATAATATTAGTATAATCATATAATCAT
TCAATATGTAAAATTCATTATGAACTATTTAGAAATTAACAAATTTATTT
ACATTCACCTACTAGAACACCTATTTTTTGGTACAATTGTGGCGCATACA
GTCCCCTCCTTGATTAGGAAGGGGGGGGGTACTGGGTttacgaggtgacg
ggtatgaN
Run BLAST on NCBI

transcript from alignment at scaffold_6:40828..41085

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071188 ID=TCONS_00071188|Name=TCONS_00071188|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_6:40828..41085 (Clytia hemisphaerica)
NtcatacccgtcacctcgtaaACCCAGTACCCCCCCCCTTCCTAATCAAG
GAGGGGACTGTATGCGCCACAATTGTACCAAAAAATAGGTGTTCTAGTAG
GTGAATGTAAATAAATTTGTTAATTTCTAAATAGTTCATAATGAATTTTA
CATATTGAATGATTATATGATTATACTAATATTATATTTCCTCGAAAAGA
TTGAAAAGGATAAGTTATTCCACtagtaaaataatttaaatattTGATAC
CGTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044244XLOC_044244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071188-exon-scaffold_6-1491911889:40828..41085TCONS_00071188-exon-scaffold_6-1491911889:40828..41085Clytia hemisphaericaexon
TCONS_00071188-exon-scaffold_6-1510915933:40828..41085TCONS_00071188-exon-scaffold_6-1510915933:40828..41085Clytia hemisphaericaexon
TCONS_00071188-exon-scaffold_6-1575043694:40828..41085TCONS_00071188-exon-scaffold_6-1575043694:40828..41085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:40828..41085 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35358	1.31996	0.766297	0	6.38883	3.6061	5.22073	5.70218	2.28127	5.65145	0	4.95813	0.450112	6.54424	0.384304	0.824834	0.508064	1.56225	1.43889	0.752846	0.65436	1.91504	1.55199	0.705492	2.17992	3.89105	0	2.97121	0	0.765339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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