|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071186 ID=TCONS_00071186|Name=TCONS_00071186|organism=Clytia hemisphaerica|type=transcript|length=2326bp
ACTTCACTTGTCTTGATTTCACATTATTACCAAAATTACCATATCACTAA
ACTAACAATATGTCATTCATTCTATTATTTGTTTATTCATTCCAGTTGAA
TCTCTCCTATCACAGTgggcaaaatttacaaattccTGTCCGTAAAATAT
ATTAACagtataaaatttaaaatatctgtatatatttacaattttttaac
AGGCAGAAATTTTAGGCAGCTCTACGTCTCTGAGGTTTTAAGGGGCAATC
ACAAAAATCTTTGTAGGGCATTATCACCCGACTGACCCAAAAAATAATTC
CTCCTTGTTCATCAGTcactttctaaaaacaaaaatcaatcaGAAGCAAT
TTGCATTGAACGCCATCAACAAAACAACTGTCATGCTTAGAAAGGCCTAA
CAACAtcacatttttcaaagatttttgctgTTTCTGCTCTAGAAAGATTA
CAATTTTTGTTGTGTGTTGAAATTTTTTGGGAATTTAGGGAATTTAGACA
AGATTTAACAAGATTAGTTCTCTTCAAAACTAAATTAAATGTTTTCCTTA
CTCACCAAAATAACTTTGGttcaaaattagattttttgatattttgcctA
ACTAACAAATGAAATTCatgaaaattgcttgaaaaaggGCAAAATAGAGC
AGATTTACACTCATTAACtaatttgtcaaaattaaatCTCCATTCGCCAT
ATAAGTgatgaatagacctttttggaATTGCAGCAACTATCTGCTTTTGT
ATGCAAAAATGTGGAGCACAAATTTGCAGTGGTGAAATTCCTTttaaaaa
agtatgcaaaatctaaGCAACTTTTAAGAAGAAATAAGATGTTAATGACT
GGTTTATTTGCATGGAAATGGCTTAATACAAAAGAAGATAGCCTTAAATG
actaaaaaaaagtgtaaattcTTCCATCTGATTGCACaattaacaattca
atttcaccTATATAACGGATTGGAAAAATGCTTAATGCTAGAAAGCGTAC
ATTCTAATTGTGTTATCTATTGTTACTGGTATATAAGTAGATAAATGTAA
ACAACGGCAAAATTATATTTCCTATCCCTCACTAGTATAGAAATGGAGGT
TGCATACAATTTATGACATCAATTATTCCAAAAAGGACTATAGAGAACAA
GGTAAATTAAAAAAATGAGCTCATCGTCGTCCTGTTGAATAATTATGTAG
TCCAGCCATAAAAACAATGATTGAGCCATGCATAATTACTGtatcatgca
tattgtaataattatgcatggttttatcattgtttttctgctggactaca
taattattcagcagggtggcctctttgaaaaaaggtctattcctcCTCCT
TGCTATTCCTAAtagtaataatttcaaaataatgttttttaaaatgaatt
tCTTAGTTGTATTATAAACCTTTTCCCTCAAGTGATTTCTTAGATCCAAG
GTTAAGTCATAGttattatttcttttgtatttatatttGATATTCTATCT
GATACGTGTTGAGTGGTGTCTTTCTCTATGTTtcgcaaaaaagaattttg
aacgTAATACATTGTTCAAAATTGTCTCTGATTTCAGTCATATTTTGTAG
TGCCAGCCAGAGCCGAGCATCACAGAGAGGTCACAGCATCAGTTGTGTCG
ATGACTTTGTGCATTTTTCGTCAGCAGTTCTATCATTATGTATTTTTAAT
AATAGTATGTTTAAACATCTTGCTTTGGTTCCTTTAATTGAGTTAGTGTC
TTTACGTTGGTTGCACTTTTCACCTCTTTTTTCCATCACCAGGTTTTTGT
TATTGTCTCAAAAAAATCATCGCTCGGAGTATCGTTTTGTGTATTATAAA
AGCTGGTGGTGTCGGGGTTGAACTCTACTCTCCTCGACTTCATCACTACA
TCATACAAACCGCAATGTCCAGATTTGTTCATTGAGAACCTTTTTCACTA
TTCTTTTGTTATTGGTTGGAGTGCTAAGGTCTAAAGATTTTGGTAATAAA
GCATGAGCTTTTGAACTTCTTCAAATTATATGACGCTCTCATGTGGTGTG
CTTTCTCTATCTTCCCCATGTCTGACTTTGATAAGTTTGACCACAATTTA
GTATTATGTAGGGCTTTCGCTTTGATGATGACTCCATACAGCAACTCATT
GCAATTATTAACATGTGATATGCTTCGTGTGCCACAGTCTCTGTACCACC
ATTCCCCAACAGACCAACATGCAACAAGGAGAGAGTTATatcggatcacc
caaagttaccttcatttttttatttttcatttttttatttttttatccac
ggatcgctgatagtcacctttccggG Run BLAST on NCBI transcript from alignment at scaffold_6:24949..27274 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071186 ID=TCONS_00071186|Name=TCONS_00071186|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at scaffold_6:24949..27274 (Clytia hemisphaerica)
Cccggaaaggtgactatcagcgatccgtggataaaaaaataaaaaaatga
aaaataaaaaaatgaaggtaactttgggtgatccgatATAACTCTCTCCT
TGTTGCATGTTGGTCTGTTGGGGAATGGTGGTACAGAGACTGTGGCACAC
GAAGCATATCACATGTTAATAATTGCAATGAGTTGCTGTATGGAGTCATC
ATCAAAGCGAAAGCCCTACATAATACTAAATTGTGGTCAAACTTATCAAA
GTCAGACATGGGGAAGATAGAGAAAGCACACCACATGAGAGCGTCATATA
ATTTGAAGAAGTTCAAAAGCTCATGCTTTATTACCAAAATCTTTAGACCT
TAGCACTCCAACCAATAACAAAAGAATAGTGAAAAAGGTTCTCAATGAAC
AAATCTGGACATTGCGGTTTGTATGATGTAGTGATGAAGTCGAGGAGAGT
AGAGTTCAACCCCGACACCACCAGCTTTTATAATACACAAAACGATACTC
CGAGCGATGATTTTTTTGAGACAATAACAAAAACCTGGTGATGGAAAAAA
GAGGTGAAAAGTGCAACCAACGTAAAGACACTAACTCAATTAAAGGAACC
AAAGCAAGATGTTTAAACATACTATTATTAAAAATACATAATGATAGAAC
TGCTGACGAAAAATGCACAAAGTCATCGACACAACTGATGCTGTGACCTC
TCTGTGATGCTCGGCTCTGGCTGGCACTACAAAATATGACTGAAATCAGA
GACAATTTTGAACAATGTATTAcgttcaaaattcttttttgcgaAACATA
GAGAAAGACACCACTCAACACGTATCAGATAGAATATCaaatataaatac
aaaagaaataataaCTATGACTTAACCTTGGATCTAAGAAATCACTTGAG
GGAAAAGGTTTATAATACAACTAAGaaattcattttaaaaaacattattt
tgaaattattactaTTAGGAATAGCAAGGAGgaggaatagaccttttttc
aaagaggccaccctgctgaataattatgtagtccagcagaaaaacaatga
taaaaccatgcataattattacaatatgcatgataCAGTAATTATGCATG
GCTCAATCATTGTTTTTATGGCTGGACTACATAATTATTCAACAGGACGA
CGATGAGCTCATTTTTTTAATTTACCTTGTTCTCTATAGTCCTTTTTGGA
ATAATTGATGTCATAAATTGTATGCAACCTCCATTTCTATACTAGTGAGG
GATAGGAAATATAATTTTGCCGTTGTTTACATTTATCTACTTATATACCA
GTAACAATAGATAACACAATTAGAATGTACGCTTTCTAGCATTAAGCATT
TTTCCAATCCGTTATATAggtgaaattgaattgttaattGTGCAATCAGA
TGGAAgaatttacacttttttttagtCATTTAAGGCTATCTTCTTTTGTA
TTAAGCCATTTCCATGCAAATAAACCAGTCATTAACATCTTATTTCTTCT
TAAAAGTTGCttagattttgcatacttttttaaAAGGAATTTCACCACTG
CAAATTTGTGCTCCACATTTTTGCATACAAAAGCAGATAGTTGCTGCAAT
tccaaaaaggtctattcatcACTTATATGGCGAATGGAGatttaattttg
acaaattaGTTAATGAGTGTAAATCTGCTCTATTTTGCcctttttcaagc
aattttcatGAATTTCATTTGTTAGTTaggcaaaatatcaaaaaatctaa
ttttgaaCCAAAGTTATTTTGGTGAGTAAGGAAAACATTTAATTTAGTTT
TGAAGAGAACTAATCTTGTTAAATCTTGTCTAAATTCCCTAAATTCCCAA
AAAATTTCAACACACAACAAAAATTGTAATCTTTCTAGAGCAGAAAcagc
aaaaatctttgaaaaatgtgaTGTTGTTAGGCCTTTCTAAGCATGACAGT
TGTTTTGTTGATGGCGTTCAATGCAAATTGCTTCtgattgatttttgttt
ttagaaagtgACTGATGAACAAGGAGGAATTATTTTTTGGGTCAGTCGGG
TGATAATGCCCTACAAAGATTTTTGTGATTGCCCCTTAAAACCTCAGAGA
CGTAGAGCTGCCTAAAATTTCTGCCTgttaaaaaattgtaaatatataca
gatattttaaattttatactGTTAATATATTTTACGGACAggaatttgta
aattttgcccACTGTGATAGGAGAGATTCAACTGGAATGAATAAACAAAT
AATAGAATGAATGACATATTGTTAGTTTAGTGATATGGTAATTTTGGTAA
TAATGTGAAATCAAGACAAGTGAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071186-exon-scaffold_6-1491911889:24949..27274 | TCONS_00071186-exon-scaffold_6-1491911889:24949..27274 | Clytia hemisphaerica | exon |
| TCONS_00071186-exon-scaffold_6-1510915933:24949..27274 | TCONS_00071186-exon-scaffold_6-1510915933:24949..27274 | Clytia hemisphaerica | exon |
| TCONS_00071186-exon-scaffold_6-1575043694:24949..27274 | TCONS_00071186-exon-scaffold_6-1575043694:24949..27274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:24949..27274 . |
Blast
The following BLAST results are available for this feature:
|
