TCONS_00071183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071183
Unique NameTCONS_00071183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071183 ID=TCONS_00071183|Name=TCONS_00071183|organism=Clytia hemisphaerica|type=transcript|length=351bp
ATTACCCCCGAAAACTCTTTATCGAACGGGATTTTTTCAGGAGGTTCAAA
ACAGTGAAAATTTGTGTGTACAGCTGAagtaaatttggtaaatttgaTCG
AATTATCGTAGTTTTCACTGTCAAACATTTAAACTTTATGTAAATTGTTC
ACATTGGTTTGTTGCTGAATCAATTTGATTTATATGATCATTTCAAATTG
GCTTGACAAGGCATCCTTCACTCCAATAAAATTATAACTGGACACCCATA
CAGCGGAACAAAATGGAGATTTTCTGGGTGATTGTCTGTTAAGAATTGTG
CTATTTCTCGGTCATGGCGGAGaccagatattgGTAAACGGAATACAGTC
C
Run BLAST on NCBI

transcript from alignment at scaffold_6:267380..267935-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071183 ID=TCONS_00071183|Name=TCONS_00071183|organism=Clytia hemisphaerica|type=transcript|length=556bp|location=Sequence derived from alignment at scaffold_6:267380..267935- (Clytia hemisphaerica)
ATTACCCCCGAAAACTCTTTATCGAACGGGATTTTTTCAGGAGGTTCAAA
ACAGTGAAAATTTGTGTGTACAGCTGAAGTAAATTTGGTAAATTTGATCG
AATTATCGTAGTTTTCACTGTCAAACATTTAAACTTTATGTAAATTGTTC
ACATTGGTTTGTTGCTGAATCAATTTGATTTATATGATCATTTCAAATTG
GCTTGACAAGGCATCCTTCACTCCAATAAAATTATAACTGGACACCCATA
CAGCGGAACAAAATGGAGATTTTCTGGGTGATTGTCTGTTAAGAATTGTG
CTATTTCTCGGTCATGGCGGAGGTAAGCTTCACTTTTCTTAGCCAAAGTG
TAATGAAAGAGGTTGTAATTTGGCTAAAACTTCCTCAATTATGGCTAATT
TGACGGTATCAGCCACATAATTGGTGAAAAATTGGTCTTATTTTGTCATC
TACCCCCCTGTTTTTCTCACATTTCTGATTCGAACAAGGGCGCTCATAAA
TTCAGAATATCGTAACTTATTTTACAGACCAGATATTGGTAAACGGAATA
CAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044239XLOC_044239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071183-exon-scaffold_6-1575043694:267614..267935TCONS_00071183-exon-scaffold_6-1575043694:267614..267935Clytia hemisphaericaexon
TCONS_00071183-exon-scaffold_6-1575043694:267380..267408TCONS_00071183-exon-scaffold_6-1575043694:267380..267408Clytia hemisphaericaexon
TCONS_00071183-exon-scaffold_6-1510915933:267614..267935TCONS_00071183-exon-scaffold_6-1510915933:267614..267935Clytia hemisphaericaexon
TCONS_00071183-exon-scaffold_6-1510915933:267380..267408TCONS_00071183-exon-scaffold_6-1510915933:267380..267408Clytia hemisphaericaexon
TCONS_00071183-exon-scaffold_6-1491911889:267614..267935TCONS_00071183-exon-scaffold_6-1491911889:267614..267935Clytia hemisphaericaexon
TCONS_00071183-exon-scaffold_6-1491911889:267380..267408TCONS_00071183-exon-scaffold_6-1491911889:267380..267408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:267380..267935 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.92822	8.53786	0.596795	2.33348	5.44121	4.9475	13.9423	15.2849	6.24623	8.61825	4.73147	2.55188	6.39006	5.70146	5.8181	5.43875	8.31272	4.10614	5.62488	5.50831	8.22364	9.7251	8.51111	8.74233	8.49952	12.5245	0	3.16453	4.31172	5.712
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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