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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071177 ID=TCONS_00071177|Name=TCONS_00071177|organism=Clytia hemisphaerica|type=transcript|length=717bp
CcagaatttacaaaatttcgATTTCCCTCAATCCTAGACCCTACAAtttc
cgattttcaaaaatcgtgTGGAACCCTCCGTCATTTTGCAAACCTATTAC
CCGCCGGGACTTGAATATGACTAATTTTTATCTCGGAAAAATCATCTCCT
ATGTTTTTTNCGTGTGGAACCCTCCGTCATTTTGCAAACCTATTACCCAC
CGGGACTTGAATATGACTAATTTTTATCTAGGAAAAATCATCTCCTatgt
ttttgcaaaaaaaatcatagaaAATTACGATATTTCGtataaaatttagt
tttctaaagaaattaaaatatcTATACTCAATATGGATTACCTAACTTCT
TGGCACACTTAAGTGTACATCTCAATTCGTATGTTGTATCATAACTCGGT
TCACCGAAAGCTCGGACGGTCTTGTAATAAATGTTTGCTCCATGCATGCA
CGCCTTATAAGGCATATGTTTTATGTAATGCCATTGCGCAACCATCATGA
AGATTTCTAAAGCTTCTGTGTTCAGTTTAAAAGCAGCTTGGTTTGCTACG
CCAGCCTCGTTTGCACTTTTTACAGCGTTTTGTAGGACTCTTCCAAGTTT
GTCTTTTTCAATTGAGATGTTATTGTCAGCGAATTGAGTTGTCGTGTTGC
AGTAGTTTCTCAGATCTTTAAGAAAGGCTAAATCACATTCGGCTCGTGTC
CAGTTGTTGGTTTTCCC Run BLAST on NCBI transcript from alignment at scaffold_6:233861..238717- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071177 ID=TCONS_00071177|Name=TCONS_00071177|organism=Clytia hemisphaerica|type=transcript|length=4857bp|location=Sequence derived from alignment at scaffold_6:233861..238717- (Clytia hemisphaerica)
CCAGAATTTACAAAATTTCGATTTCCCTCAATCCTAGACCCTACAATTTC
CGATTTTCAAAAATCGTGTGGAACCCTCCGTCATTTTGCAAACCTATTAC
CCGCCGGGACTTGAATATGACTAATTTTTATCTCGGAAAAATCATCTCCT
ATGTTTTTTNCGTGTGGAACCCTCCGTCATTTTGCAAACCTATTACCCAC
CGGGACTTGAATATGACTAATTTTTATCTAGGAAAAATCATCTCCTATGT
TTTTGCAAAAAAAATCATAGAAAATTACGATATTTCGTATAAAATTTAGT
TTTCTAAAGAAATTAAAATATCTATACTCAATATGGATTACCTAACTTCT
TGGCACACTTAAGTGTACATCTCAATTCGTATGTTGTATCATAACTCGGT
TCACCGAAAGCTCGGACGGTCTTGTAATAAATGTTTGCTCCATGCATGCA
CGCCTTATAAGGCATATGTTTTATGTAATGCCATTGCGCAACCATCATGA
AGATTTCTAAAGCTTCTGTGTTCAGTTTAAAAGCAGCTTGGTTTGCTACG
CCAGCCTCGTTTGCACTTTTTACAGCGTTTTGTAGGACTCTTCCAAGTTT
GTCTTTTTCAATTGAGATGTTATTGTCAGCGAATTGAGTTGTCGTGTTGC
AGTAGTTTCTCAGATCTTTAAGAAAGGCTAAATCACATTCGGCCCTTGTC
CAGTTGTTGGTTTTACCCTAAGAAATAAATAATTGATAACATAGCTGACT
ATTTTATTTTAGTTTAAAAGCTGGGTATTGCTTTACACGTTTTTTTATAA
GAACAAGCTATGTAAGAACATAAAGCTTCGATGGCCAAAATGTTAAGAAC
ATTTTAAGGCTTCGTGGACTCTAGACCAACCAATTTCTAAGGAAAATATG
TAAAAGTGGTCACAAAATAGTGCAATTAAGAACATTTTAGGCTTAAAACT
CAAAAAGTTAAGAACATCCGAAGGCTTCTTCAAAAATTTTGGATGTTCTT
ATAAAAATATTTTGTATGGCGAAACTAACTTTTGATTTGGACGGATTCCA
CTGTGTTCATTTTTCGTCTGAACGTTCCAAATAAATAAGGTGCGCTCAGA
TTTTTAATTGTACTTCGTCTTAATCATTTTAAGCTTTTAGGGCTGACTTT
CCAGCGCAGCTGGTTTATTCTTCATTCTTCAAATTTTGATTGCTGTTTTT
TTTATGAATTTTGTCATTTTGGGTTGGTCCGAATTAACCGATTTTAAAGT
TTTGTATATCAAAATTTAAGTTAAGCTCTCTCTATTCATGATATGCACCA
CTGCAATGTCTTCTGCCATTACGTCACGGAACCAATAGCTCATTGTTTGG
AAGTGACGTAAAATCAGTCAATACATCACTTTCAACCAATCAGCTATTGG
GTGGAACGGAAGACATTGCAATGGTGCATATCATGAATAGAATAAAAAAC
GGAATAAAACAATAATATTTAACCATAAATACACGATATCCTGACCCTTT
TACTTTTTTTAGCGTACCTAGTACTATATTTAAGATTTCACTTACACAAA
CATAGCAAACATCATGCATGTTACAAGCATCTCTGAATTCGTCCTTGTAG
GGAAACGGCCTATTAAATGGTACGCTACACCCGTCCGTTAACACCATAAT
ATCGCACGTGGAAGTGTCTATAGCAACGGATGATTCCATAATGGCAGCCA
AAGCAATAATCAATAGCAACATTTTGATTTGGTGTGATAAAACTTTTTGA
ACGTTTAAAAATGGCTCAAAAATATTTTACTTGTGATTTACAGCTAATAT
GAGAAAATGAAATTTGAAATCCTCTTTTTTCTAATTTTACAACCTTTATT
TTTCAATATTTATTCATCTTTATGTATTTATTATGCTTCTTAACTTCAAT
AGTTCTCACGCTCCTGAACGTCGATCTTTAGGGCTACATACACGTTTTTT
ATAAGAACATCCAAAAATTTTGAAGCCTTCAGATGCTTTTAATTTTTTGG
GTTTCAAGCCTAAAAATGTTCTTAACATGTTCTTATTTTTTGAGTATTTT
TGTCCATTTTCCTAAGAAAACAGGTGCTTTAGAGCCCACAAAGCCTTAAA
ATGTTCTTAACATGTTCTTAAGAAACGCGTACACTACTCAATATATTGTT
ATACAATTTGTTAATAAGTGCCGGCAATGTATTATAAAGTACTGTTGTAT
AAAGAAAGAAAATTCAATTCAATTCAATAGACGACCCACGGCCAGAACAT
ACCACGTACATTTTCGGGTCATGCTCGGGCCTAAAATATTAATGTATTGA
TGTTCGGGGCAAGTTTGGGTCACAAAATTTGAATTTTCGTCTATGAAAAC
TTGGTCCAAACACGCCGAACATGCGCCGAACCTGCGCAGGCCGTGTTATC
GAATATTGTCAGCCAAAATATTGTGAAGTTTAAGTTACCCATTCGACAAA
ATGCGTTTATCGCGGAATCTGTATTGATCAGATATTTTCAGAATACACTA
GCCTGAATCGCAGACCTCTACAAAACCCCAGGTAGTCTTTAAGGAGCACG
AATCCGTTAGTGGATGCCAGCAGCCTAAGAATACACCTTTTCGACCGTAG
TCGCGCGGTCAGGCGCGTGCAACTTTATTATTTAATTTGCCACCCTAAAC
TCGATCCAATCCTTTTTTTACACTTTTTCCTATTGTCCTTAGGCGCGAAA
AAAGAGTGGGTGGTAAAACGGACAAAAAACGCCTGCGCGGCAATTGGCGG
CTACGGTCGAAAAGGTGTATTAGTCTCAAAATGTCATTAATCTCTTAACA
GCTTTATCTATGAAGTGATAAAGGGTCTAGATGAGGTTGAATAATTTTTC
TTTGCTCTCTTTTTCTGCTGCTTTTGAAATGTTTTTAAAAGATTTTACCT
ATGACTACACGTTTTTTTATAAGAACATCCAAAAAATTTGAAGCTTTTGG
ATGTTCTTAACTTTTTGAGTTTTGAGCTTTAATTTGTTCTTAACATGCTC
TTATTTTCTCATTTTTGTGAGTATTTTATCAATTTTCCAAAAGAAAGGGG
GGGTTTTAGAGCCCACAAAGCCTTAAAATGTTCTTAACATTTTTGCCATC
GAAGCCTTAGTTTGTTCTTATAAAAAAAACGTGTATCAAATTTTACGCTT
TTATCTCCCTAATGTTGTGGAATGACAATCAGAAAAAATATCTGTTAGAC
GCGACGTTTGGTCATAGTATCATTTTTTGATGATTTACCTACGCAGTGTT
AAGAAGGAAGGCTCAATTACGAAAAATGATATAAAAGTAAAAACTAATTT
TCAAGAATATCCTGCCTGAAAACCGCTATCTTACTTTGTACTAGATTTAA
TTTTAAAAATTTATGTTACACGTTTTTTTTTATATGAACATCCGAAAGAT
TTTGAAGCCTTCAGATGTTCTTAACTTTTTGAGTTTCAAGCCTTAAAATG
TGCTTTTACATGTTTTTATTTTCCCCATTTTTTATGTTTTTTTACCCATT
TTTCTAAGAAATGTGCTGTTTTTGAGTCTGCGAAGCCTTAAAATGTTCTT
AACTTGTTCTTAACATTTTGGACATCGAACCCTTACGTTCTTATATAGTT
TGTTCTTATAAAAATAACTTACTTTCGTCTAACTTATATCATTTGATAAA
AATAGGGAAATAAAATATCGGTTAGGTATTATAAAACCACGGTAAAAAAT
TCGTTGTAGAAAACTGTATGTCATAATGCGTATAATACTAATATCACTTC
AATGAATGAAAAAAGTGTCATCAAACAGTACATACTATACCCAGATAACA
TATATTAATATTGAAAGATAAAAGAAAAAAGATGTTTCAATATTTATTTT
TTTTTCTAACCTGTACACCCCCTGTCTATATCTCTCAATCTCAATCTTTC
TTTTAAATTTAATCGCTTAGTAAATAAATACACAGTAATCATCATATCTA
TATCTGCAACTCATCAAAATGGTTGTAGTTGATTTAGTTTGATTCAGGGG
CACAGACTGGACATTCATACTCTCCCCTACCTTTAATCACCAGTGTCTAA
GAAATGGAACGTATAATGTCGTTGATCAAGGGTGCTTTTTGACGACTTTT
AAAATCACGCTAAGGGTTGTAGAATTATTATAATTATAATTATTCCCATA
AGGGTTTTAAAAAGAGGAGGCCCCTTTAAAGGGCCTTAAAGGGCTTTCTT
CGAAAAATAATCTCGATAAGGGTCCCGAAATTACCAAGTTAGCAATTTTC
CCCCTCGACTTTGACCAAAGAAATGCGGTTTTCAAAAAAGAAACCGTACA
AACAAATCTTGTATTTACGAAGGAATTCATTTATATGTCATTCAGATGTT
GTTAAAAATTTATATTTCAATGAAAAACTATAACCTGCTATACAATATTT
CCTACAAATTTTACTCTCAATAAGGGTGACCAAGCTTCTTTGCGCATGCG
TGCGTACAGATTGGTTTTGGTCTTTTGGCATAACTTGATGCACCGAATGC
ATTGACAGCCTTGTAATAGATGTTTGCTCCATGTAGGCACGCTATGTGTN
ATGCACCAAATGCATTGACAGCCTTGTAGTAGAGGTTTGCTCCATGTAGG
CACGCTTTGTGCTTATCCTGGATGTATCGCCAGGCTACAACCATCATAAA
GATTTCGAAAGCTTCTTTCTTCAGGTCAATACCGTCTTGTGAAGTTAGGC
CAGCTTTCTTGACAGCGTTTTGTAGGATACTTCGAAGTTTGTCTTTTTGG
AATGTTACGTGACTATCAGCGAATTGAGTTGTCGTGTTGCAGTAGTTTCT
CAGATCTTTAAGAAAGGCTAAATCACATTCGGCTCGTGTCCAGTTGTTGG
TTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071177-exon-scaffold_6-1575043694:238032..238717 | TCONS_00071177-exon-scaffold_6-1575043694:238032..238717 | Clytia hemisphaerica | exon |
| TCONS_00071177-exon-scaffold_6-1575043694:233861..233891 | TCONS_00071177-exon-scaffold_6-1575043694:233861..233891 | Clytia hemisphaerica | exon |
| TCONS_00071177-exon-scaffold_6-1510915933:238032..238717 | TCONS_00071177-exon-scaffold_6-1510915933:238032..238717 | Clytia hemisphaerica | exon |
| TCONS_00071177-exon-scaffold_6-1510915933:233861..233891 | TCONS_00071177-exon-scaffold_6-1510915933:233861..233891 | Clytia hemisphaerica | exon |
| TCONS_00071177-exon-scaffold_6-1491911889:238032..238717 | TCONS_00071177-exon-scaffold_6-1491911889:238032..238717 | Clytia hemisphaerica | exon |
| TCONS_00071177-exon-scaffold_6-1491911889:233861..233891 | TCONS_00071177-exon-scaffold_6-1491911889:233861..233891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:233861..238717 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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