TCONS_00071170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071170
Unique NameTCONS_00071170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071170 ID=TCONS_00071170|Name=TCONS_00071170|organism=Clytia hemisphaerica|type=transcript|length=812bp
TGTTGTtagagttttttttaatattttttggtTTATTCCTATTCCCTGAT
TCACAATCCTTGGTATATTCCTTGTTGGGAAATTTGAATAGAGTCAAAGa
gACCGTACGGCCTGATGGAGAAAGAATTAGAAGAGTACCGCAAATATTTT
TGGCAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAA
TAACATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAA
ATTTATTCGCCAAAACTGACGTTGATAAAAATTACAGGATCAGCTTCCAT
GAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACATGTGAGTGGCGA
TCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACCGTGATGGTTACC
TGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTCGGTCACGTAATG
GATGATAAAGGCATACGACGTGTGATGGGTTTGATGGATAAGAATAATGA
CGGAATGATAACGTTTCAAGaatTCTGCAAGTTCATGGCTTAGAGGTTGG
AACGTTCGATGGAAGGATTGGATTTTCATAAGCCAAAAGGGATGGCTTTT
TTGTATATAGTTACTTGTAAATGTGGTTAAAATTGTTTCAATAAAAGAAA
GTCTTTAACTTCCAAGCTTCTACTCTGGAACGCgtttaatgttttttaat
gACACCCTATTCCTTAGCTCTGGTTTAGTCGGCCCACTTTTAGCCCACTT
TATGCCAACTCtagcaattagaataggcagggctaAAAGTGGGCCGACTA
AACCAGAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_6:199705..206751-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071170 ID=TCONS_00071170|Name=TCONS_00071170|organism=Clytia hemisphaerica|type=transcript|length=7047bp|location=Sequence derived from alignment at scaffold_6:199705..206751- (Clytia hemisphaerica)
TGTTGTTAGAGTTTTTTTTAATATTTTTTGGTTTATTCCTATTCCCTGAT
TCACAATCCTTGGTATATTCCTTGTTGGGAAATTTGAATAGAGTCAAAGG
TAGGTTGATTTGCGATTAATTTTTTGATAATATCCATTGCTAGGCGTCAT
TAAAAGGTTGCCATGTTAGTGATGCATAAAATTGGCATAACATTTTTTGT
CAGATTGTTTTTTTTTTTATTAACCTGTAATTTATGATCACGGCCTCTTT
GGTGCTCTGTGATGGCTTTATTTTGTATCTGAGAAAATATATGGATCTTT
CAATTCTGGGTCATTTTGTATTGTTGAGCCATGGTAACCACATCTTGATA
AGAATCTTGAAATCATATATAAAAGGAACTGCATAGATATCAGATACTCA
TAATTTGCTACACCACACTTATAAGTTTTTTTGCAGTGTCATTTTCGCAG
TAGGAGAGAGGCTTTCTTATTTTCTTCAACCTTGAGGCGAGAATGAAAAA
ATTAATGATGGTACAGTTGAATTTCTATAATTCGAACAAGCACGGGGAAC
TCAAATTTGTTAGAGTTACTTATTTGTTAGAGGGTTTATAGGTAGGCTTT
TCCTAATCCGTGTACCCACTACGTACTCAGTTAGAGTTGAAGAAATTTTG
GAGTTATGAAGTAAAGTTTAATGACGCATTGTTAACTGAAGGGGCTAGAG
AACTTATTCGAGTTAAGGAGAAATTCGACTTGTAGAGGCTCGAAATATGG
AGACTCTACTGTACGTATCTTTAGACAAGCCAGCAGGTGACAGGTGGCAG
AAAACCTAAAGCTATGTTAGTATCTACATCAGTTCTGATCTTTATATACT
TAGACTAGTAAACCACGTCGTTGCAGCTTACGCTTGCAAAGGGCTCATTA
CTTGGGCTTTTGACACCACCCTCCCACAGCAATTTATCTTTTTATTATCT
TTATTCACGCTTTTGTGTGTCTCAGTAAAGCCAGACGTTTGCTAGTCCAT
AAAAACTAAGCTTTAGCTCACTGACTCAACAACAGTTTTCAAGCAGTTGG
TAATAATAAGTAGTCTAAATGCAAAGAAGGGCTTATTTTTCTGGGACATC
TCCAGGTCAGTCTCTTAAGGTTGTCTTGGTAGCTGATATCCACTAACGAA
TTTGTGCTCCTTATATAAATTTACTGACTTCGTCTTTGCAGAGTCTGCAA
TTCAGACTGTCTAGCTAAACCTGGTCGAAATGCGATTTCCTAGAATTACA
CCCCTGTCTCACAGCCCCAGTGGAACTTCTTGCCACAGTGGGATGAAAAT
TTATATCAAAATNCGATTTCCTGGAATTACACCCCTGTCTCACAGCCCAG
TGGAACTTCTTGCCACAGTGGGATTTTGAAAATTTATATCAAAATTCCAA
AGGGGATATAAATTCTATTGTTCCTAGGTAAAAAACCATTCGGGATAGTT
TTGGATTGCAATTTTTCCCATTGTTTTTCAAATGGAGATGAGAACAATGC
AATTTTCCAATGGGCTGAACTTATAGGGTATTTTTCCCAACGAGAACAAA
ACATCTTAGCCAAATTTTCAGTGGTTACGGGTCTGTGACACAGGGTTGTT
TCATTCTCCTTTGAAGAAAATACATGGAATACATCCGCATTCATTTAGAT
GGGTAGGAGTATTTTATAGAGCTGTTTTCATTAAAGGCGATGAACATTTT
TTAGACTGCTGTGTATGCTCAAAGGCAGGGAGGAAAAAAATGACTTTGAA
AAGAAGAAAAACGGTTTTTCCTTTTTGTATTTTGAGTTTACTCACGAAGA
TTGCTGCGATTTTTTCCGTTTCCTATGAGAATGAGATACGAAAACTTCCT
TTTTCCATAGTGCTTGTCGGTTATTGGAAATTTTTTTATATAAGAACGTT
TTACGATATTTAAAAGAATTATTTAATAGGATTTATTGAGATTTCTTAGT
GAAGATTTCTAGGAAGCTTACAGAAATAACGTTTTAATGTGTCCCAACCT
CAAACAAACAACATGGAAAATTTACTTGATATGATAAAGCTATATTAGTT
GTACCTGGTTGTGCTATAGGTCAAAGCCTTTAAACTTTGAGAGATTCTTT
CCTGGAATGTCTGGTTTAAGTCTTAGTAAAGTAATCTTAGCCTGTGTTCT
TACAAAAAAGGAAATAATATTGTAAACGAATTGATCTTTTTCTTGAAAGA
GAGTTTTCATGAGGTGTTGAATGAGAATCAAGTCTGAGATAGATAAAAAT
TTGAAGTAATATAAGCCAAAATTTGTTTTCAAGACGTATTTTTTCAGTCA
AAAGAAGGGGGAATATATAGCAATTGAAGAAAAAATGACAGTAATTATTT
TCATTTTTCCCAGCCTAACACACGACGTCATTTCGACGTACATCTAACGT
CAGATTAACGTCATGGGCGTCAAATGGATGTTGCTTAAACGTTTTCTGTC
TGAAAAATCCATATTTTCATATTTCGAACTAGCCTCTAAACCATTTACGT
CATAAGTACCCACTTTCATTTTTTCATTGTCAACGTAATTCTGCGGTATA
GGGGCTGGGCTACCTTTATATATATATTTTCTGTTAGTCTGATCGAGGAA
GGGAGAAACGATCTTTTTCTCGAGCAAAATAGACAAGAAAATGTTTGGGG
TAAGGTTAATCAAAACTAACCTTTTATACATTTTTTAAAAAGGTGTTTCA
TTGTGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATT
ATCCGGTCGGGTATACTACGAAAAAGGTCTGCTATTTTTCGGCTGTATAA
AGGTCGTAATCATTCTTGAAATTTTCGGAGAGAGGGGTTTTTTACTTTTC
ATGATTTTCTTCTTTATTTTCTTTTTCTAGAGACCGTACGGCCTGATGGA
GAAAGAATTAGAAGGTAGGTTTTTGTTTCCAAGTTTTTGTTTTTTGTTTG
AGAGGATTTTCATATACGGCTACAATGCTGTTTGATACTGATTTCTTAAT
TCGTCGTTTCTCAAAATTCAATTTCGGGTGAAAACCGTAATTTCAGCTCT
TCCACTTTATGTCATCGGGTTTTTTAATTTGGGAGGGGTTTATCGGCTTT
CAGGCTATATTCTAAATCTTATTGTATCATTTTAAAACTTTTAGATCATG
AGATCCTTAAGTCTTAAGTCTAATGTTAAAACTCAGAGTTAGAACTCTAC
TTTCCCACCATCAGTTAAAGCACTTAAAAATCACTTGCTTTTTTGAAATT
CTGCCAAATATTATGATCTGCATTGTAGATAGAATATTTTACATATATAT
TTTACGTGGATAGTTCAATAATCAAGGACCTTTTAGCCAGTCTATAACAT
CATCCACTGCTAGCCGGTTCGGAATATTTATTAACTGAACGGAGCATTGG
CTAGAGCGGGAAACCGAGAACCCTTTAATTTGTGGTGCTGAAATCGTAGA
CAACATGGCAATCTCTTCTTGATTCAAATCCTAGTCATTACCTTTAAAAT
TAAACTTGCTAGCCTCCAGGGAAAGGTGTGACCTAGCTTTGAAACCTTTT
TAAAGTGCGCTAAAAGGATCATTGCATACACTAGATTGATGATTCCAAAA
GAACGGTAGCAAAGATTTTCTTTATTATCAAAATTCAATACGATAGTAGA
CAAATTCATTTATTTTCTCTATTTTTAGAGTACCGCAAATATTTTTGGCA
GCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAACA
TGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTA
TTCGCCAAAACTGACGTTGATAGTATGTATCCCAGCTGGAACACAACGTT
GTTTCAATGTTTATCTAACGTTAACGTCAACGTTAGATTAACGTTGAAAC
AACGTTGTGTGCCAGCTATGTATTGATTCCTTTTTAGGGGGCTTTTTTAC
ACCCCCCTTCTCACAGACCCGGTGGGATTCTATCAGCTAGTGGGGTTAAA
AATAACGGTCAAAAACTCGATAAGGATTGATATTCCCATGTTTTTTATGG
CTGGGGATTTAAATTCCATTGTTTTCTAGCCAGAAAATTCTGTGGGAATG
GAAAAAATAGCACAATATTTTACAATTATCGTATCTCCGTTCGCAGTTTG
TAATAATGAACACTTAATGATTTTACTAGCGAGCACCTCACTAAAAACCG
GGATTTTTCATCATCAAAGTTCCACTTTGCCGATTTTCGAAAAATAAAAG
CCTTTCAAGTGCTTTGACGCAAATTCGATTATTTTGATACTGCAGGAGCT
TCGAAAGTTATAAGTGACGTCAAAAAATCGAATGTTTAGAGCCCGAAAAC
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGCCCGAAAACCCGGGCTCAAAACAT
TCGAAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGCGG
GTGACGTCTAGTATAGGCTAGAAAACCTGGGCTCAAAACATTCGAAAAAG
TCACAAAGTGGAATAGACGTTAGTTGCGTACAAAAACGCGGGTGACGTCT
AGTATAGGCTATGATTGTATATGGTATAAAAAAAACGGGGAGGATTGGCA
TGTGTCAGTCTCGTCGCAATCGTGACGGGATCTTCTAAATAGACACAAGA
CAAGGACAGGTCGATGACACTACTGCCTTGCCAAAGATGTTGTCCTCTTC
TACTGCCTTGCAATCATATTCTCTCTATAGAAGATATACAACTGTTGCTC
TCTAAAATAGACTGACGCACCAGTCAGGCTAACATATCATGCGGGAATAG
TGAGCGTAGTAGGAAATTCTGTCGATGAGAGGTGCGCTTCGCACGAAAGT
GGACATCGGGCTTATCTGATATTCCGATGGCGCATTGGCGGCCGCCCACG
CTAAAGCTCTAAAGGAGCGGGCCAAAATTTTCCCGACCTTCAGAGCTTTA
GCGTGTCGGAAGAAAATTTCTCCATCGAGTACCAGATAAACATCGGGCTT
AAGTTAGATCGCTTCCAAATAGTTTTTGGGAAGATTTCGTGGGAATTTCC
CTACTTTCTCAATTCATACCCACCTATTTTAACCCGTTCTCATGCGCAGT
TCCTATTTTACCAAAAACCCCACACAGCCCTCTAACATGGTTTAATTAAT
AGACTATTTCGCTAGTCTCTAAAGATGTCAACTTCCAAAAGTGTTAAAGG
GACTGAAAAAAATAGTGTTTAATGTACGCCACTTGTTCTCTCTTATCTAC
CTGCAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATT
GCAAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCA
AGAGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGG
CCGCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGT
GTGATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGG
TACCTTAGCATTTGTTTTCTTTTCATGTTACACATTTCTTTTAATAAAAA
CATCCAAATGTTCTTAACTTTTTGATTTTTAAACCAAATATTATTCTGAT
TTTCAGCATTTTGTGAAGATTTATATTTGATTTCTACAGTCTGTTTCATT
AAGTTTAAAGCCTGCAGGGTTAGAGTAGAATCTCTAACCTTTCCCAGGCA
AAAAAAAAAGTGAAGCCACTTATTTCCCATTCAGAATGTGCCTGGAACGC
GTCGCAATCATGACGACAGATTGTATCTAGTGGTTCCTTTGTTTTTGAGG
ACTACATTTTTTGAAATCTAGATCTTAATTTCAATCCAGCGTTTGTGTAA
AAACCACGCGTGGGCGTTCTGGATTGGAAATAAACGACTTCATTTCCTAT
CCAGGAGTCTTGAGCCTAGCCCCTCGGGCTTAGAATAAGTCAATGGTTTG
TACCTCTAAAGAATCCTGCATTATAACACGCATGCGTAATTTGTCGTTCT
TTAAACATATGTAGTTAAACTGCGTGATAATCAAAGAGGAGTAAATTCGT
ACTTAGGGGTGGACAAACTAACCGGGTCGGGGTTGGGTTATGGACGGCGA
AATATGTCATATTTTGTGAAATATGTTGTTCTTTTTGTCTATTTTTAGCC
AATGTAGGATTCTTTAAATTAAGCCTCTCATAAATCTTGTTTTCTTTTGT
TTCAGAATTCTGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAG
GATTGGATTTTCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACT
TGTAAATGTGGTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAA
GCTTCTACTCTGGAACGCGTTTAATGTTTTTTAATGACACCCTATTCCTT
AGCTCTGGTTTAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCTAGC
AATTAGAATAGGCAGGGCTAAAAGTGGGCCGACTAAACCAGAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044235XLOC_044235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071170-exon-scaffold_6-1575043694:206653..206751TCONS_00071170-exon-scaffold_6-1575043694:206653..206751Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1575043694:203838..203871TCONS_00071170-exon-scaffold_6-1575043694:203838..203871Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1575043694:202930..203073TCONS_00071170-exon-scaffold_6-1575043694:202930..203073Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1575043694:200703..200945TCONS_00071170-exon-scaffold_6-1575043694:200703..200945Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1575043694:199705..199996TCONS_00071170-exon-scaffold_6-1575043694:199705..199996Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1510915933:206653..206751TCONS_00071170-exon-scaffold_6-1510915933:206653..206751Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1510915933:203838..203871TCONS_00071170-exon-scaffold_6-1510915933:203838..203871Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1510915933:202930..203073TCONS_00071170-exon-scaffold_6-1510915933:202930..203073Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1510915933:200703..200945TCONS_00071170-exon-scaffold_6-1510915933:200703..200945Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1510915933:199705..199996TCONS_00071170-exon-scaffold_6-1510915933:199705..199996Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1491911889:206653..206751TCONS_00071170-exon-scaffold_6-1491911889:206653..206751Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1491911889:203838..203871TCONS_00071170-exon-scaffold_6-1491911889:203838..203871Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1491911889:202930..203073TCONS_00071170-exon-scaffold_6-1491911889:202930..203073Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1491911889:200703..200945TCONS_00071170-exon-scaffold_6-1491911889:200703..200945Clytia hemisphaericaexon
TCONS_00071170-exon-scaffold_6-1491911889:199705..199996TCONS_00071170-exon-scaffold_6-1491911889:199705..199996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:199705..206751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00170078	1.22266	0	0	0	0.155886	4.84467	0	1.0597	0	0	19.6837	13.4491	1.06513e-07	3.70677e-06	5.1775e-09	0	12.3918	34.8752	0.000391331	0.000207756	0.0288813	0.0122662	22.1733	32.9115	0	0.0156448	0	0
Blast
[Close]
BLAST of TCONS_00071170 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.851e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:  112 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 540
            L E+++ E+++ F   D DGDG ++  E   ++R++G N T  E++++  + D D N  I F EF      K ++  S + +R  F+  D+D +GY++  E    +  LG  + D+ +  ++   D + DG + ++EF + M 
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of TCONS_00071170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM33.851e-1827.97Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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