TCONS_00071168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071168
Unique NameTCONS_00071168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071168 ID=TCONS_00071168|Name=TCONS_00071168|organism=Clytia hemisphaerica|type=transcript|length=845bp
attttttcattgtcAACGTAATTCTGCGGTATAGGGGCTGGGCTAccttt
atatatatattttctgttAGTCTGATCGAGGAAGGGAGAAACGATCTTTT
TCTCGAGCAAAATAGACAAGAAAATGTTTGGGagACCGTACGGCCTGATG
GAGAAAGAATTAGAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGA
CGGAGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAA
TGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACT
GACGTTGATAAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTT
CATTGCAAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCT
TTCAAGAGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGT
TTGGCCGCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACG
ACGTGTGATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTC
AAGaatTCTGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGA
TTGGATTTTCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTG
TAAATGTGGTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGC
TTCTACTCTGGAACGCgtttaatgttttttaatgACACCCTATTCCTTAG
CTCTGGTTTAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCtagcaa
ttagaataggcagggctaAAAGTGGGCCGACTAAACCAGAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_6:199705..204234-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071168 ID=TCONS_00071168|Name=TCONS_00071168|organism=Clytia hemisphaerica|type=transcript|length=4530bp|location=Sequence derived from alignment at scaffold_6:199705..204234- (Clytia hemisphaerica)
ATTTTTTCATTGTCAACGTAATTCTGCGGTATAGGGGCTGGGCTACCTTT
ATATATATATTTTCTGTTAGTCTGATCGAGGAAGGGAGAAACGATCTTTT
TCTCGAGCAAAATAGACAAGAAAATGTTTGGGGTAAGGTTAATCAAAACT
AACCTTTTATACATTTTTTAAAAAGGTGTTTCATTGTGAAAAATATTCTT
CGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGGGTATACT
ACGAAAAAGGTCTGCTATTTTTCGGCTGTATAAAGGTCGTAATCATTCTT
GAAATTTTCGGAGAGAGGGGTTTTTTACTTTTCATGATTTTCTTCTTTAT
TTTCTTTTTCTAGAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGGTA
GGTTTTTGTTTCCAAGTTTTTGTTTTTTGTTTGAGAGGATTTTCATATAC
GGCTACAATGCTGTTTGATACTGATTTCTTAATTCGTCGTTTCTCAAAAT
TCAATTTCGGGTGAAAACCGTAATTTCAGCTCTTCCACTTTATGTCATCG
GGTTTTTTAATTTGGGAGGGGTTTATCGGCTTTCAGGCTATATTCTAAAT
CTTATTGTATCATTTTAAAACTTTTAGATCATGAGATCCTTAAGTCTTAA
GTCTAATGTTAAAACTCAGAGTTAGAACTCTACTTTCCCACCATCAGTTA
AAGCACTTAAAAATCACTTGCTTTTTTGAAATTCTGCCAAATATTATGAT
CTGCATTGTAGATAGAATATTTTACATATATATTTTACGTGGATAGTTCA
ATAATCAAGGACCTTTTAGCCAGTCTATAACATCATCCACTGCTAGCCGG
TTCGGAATATTTATTAACTGAACGGAGCATTGGCTAGAGCGGGAAACCGA
GAACCCTTTAATTTGTGGTGCTGAAATCGTAGACAACATGGCAATCTCTT
CTTGATTCAAATCCTAGTCATTACCTTTAAAATTAAACTTGCTAGCCTCC
AGGGAAAGGTGTGACCTAGCTTTGAAACCTTTTTAAAGTGCGCTAAAAGG
ATCATTGCATACACTAGATTGATGATTCCAAAAGAACGGTAGCAAAGATT
TTCTTTATTATCAAAATTCAATACGATAGTAGACAAATTCATTTATTTTC
TCTATTTTTAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAG
ACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATGGGT
TTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGT
TGATAGTATGTATCCCAGCTGGAACACAACGTTGTTTCAATGTTTATCTA
ACGTTAACGTCAACGTTAGATTAACGTTGAAACAACGTTGTGTGCCAGCT
ATGTATTGATTCCTTTTTAGGGGGCTTTTTTACACCCCCCTTCTCACAGA
CCCGGTGGGATTCTATCAGCTAGTGGGGTTAAAAATAACGGTCAAAAACT
CGATAAGGATTGATATTCCCATGTTTTTTATGGCTGGGGATTTAAATTCC
ATTGTTTTCTAGCCAGAAAATTCTGTGGGAATGGAAAAAATAGCACAATA
TTTTACAATTATCGTATCTCCGTTCGCAGTTTGTAATAATGAACACTTAA
TGATTTTACTAGCGAGCACCTCACTAAAAACCGGGATTTTTCATCATCAA
AGTTCCACTTTGCCGATTTTCGAAAAATAAAAGCCTTTCAAGTGCTTTGA
CGCAAATTCGATTATTTTGATACTGCAGGAGCTTCGAAAGTTATAAGTGA
CGTCAAAAAATCGAATGTTTAGAGCCCGAAAACCTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGCCCGAAAACCCGGGCTCAAAACATTCGAAAAAGTCGCAAAG
TGGAATAGACGTTAATTGCGTAAAAAAACGCGGGTGACGTCTAGTATAGG
CTAGAAAACCTGGGCTCAAAACATTCGAAAAAGTCACAAAGTGGAATAGA
CGTTAGTTGCGTACAAAAACGCGGGTGACGTCTAGTATAGGCTATGATTG
TATATGGTATAAAAAAAACGGGGAGGATTGGCATGTGTCAGTCTCGTCGC
AATCGTGACGGGATCTTCTAAATAGACACAAGACAAGGACAGGTCGATGA
CACTACTGCCTTGCCAAAGATGTTGTCCTCTTCTACTGCCTTGCAATCAT
ATTCTCTCTATAGAAGATATACAACTGTTGCTCTCTAAAATAGACTGACG
CACCAGTCAGGCTAACATATCATGCGGGAATAGTGAGCGTAGTAGGAAAT
TCTGTCGATGAGAGGTGCGCTTCGCACGAAAGTGGACATCGGGCTTATCT
GATATTCCGATGGCGCATTGGCGGCCGCCCACGCTAAAGCTCTAAAGGAG
CGGGCCAAAATTTTCCCGACCTTCAGAGCTTTAGCGTGTCGGAAGAAAAT
TTCTCCATCGAGTACCAGATAAACATCGGGCTTAAGTTAGATCGCTTCCA
AATAGTTTTTGGGAAGATTTCGTGGGAATTTCCCTACTTTCTCAATTCAT
ACCCACCTATTTTAACCCGTTCTCATGCGCAGTTCCTATTTTACCAAAAA
CCCCACACAGCCCTCTAACATGGTTTAATTAATAGACTATTTCGCTAGTC
TCTAAAGATGTCAACTTCCAAAAGTGTTAAAGGGACTGAAAAAAATAGTG
TTTAATGTACGCCACTTGTTCTCTCTTATCTACCTGCAGAAAATTACAGG
ATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACA
TGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACC
GTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTC
GGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATGGA
TAAGAATAATGACGGAATGATAACGTTTCAAGGTACCTTAGCATTTGTTT
TCTTTTCATGTTACACATTTCTTTTAATAAAAACATCCAAATGTTCTTAA
CTTTTTGATTTTTAAACCAAATATTATTCTGATTTTCAGCATTTTGTGAA
GATTTATATTTGATTTCTACAGTCTGTTTCATTAAGTTTAAAGCCTGCAG
GGTTAGAGTAGAATCTCTAACCTTTCCCAGGCAAAAAAAAAAGTGAAGCC
ACTTATTTCCCATTCAGAATGTGCCTGGAACGCGTCGCAATCATGACGAC
AGATTGTATCTAGTGGTTCCTTTGTTTTTGAGGACTACATTTTTTGAAAT
CTAGATCTTAATTTCAATCCAGCGTTTGTGTAAAAACCACGCGTGGGCGT
TCTGGATTGGAAATAAACGACTTCATTTCCTATCCAGGAGTCTTGAGCCT
AGCCCCTCGGGCTTAGAATAAGTCAATGGTTTGTACCTCTAAAGAATCCT
GCATTATAACACGCATGCGTAATTTGTCGTTCTTTAAACATATGTAGTTA
AACTGCGTGATAATCAAAGAGGAGTAAATTCGTACTTAGGGGTGGACAAA
CTAACCGGGTCGGGGTTGGGTTATGGACGGCGAAATATGTCATATTTTGT
GAAATATGTTGTTCTTTTTGTCTATTTTTAGCCAATGTAGGATTCTTTAA
ATTAAGCCTCTCATAAATCTTGTTTTCTTTTGTTTCAGAATTCTGCAAGT
TCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTTTCATAAG
CCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTGGTTAAAA
TTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTCTGGAACG
CGTTTAATGTTTTTTAATGACACCCTATTCCTTAGCTCTGGTTTAGTCGG
CCCACTTTTAGCCCACTTTATGCCAACTCTAGCAATTAGAATAGGCAGGG
CTAAAAGTGGGCCGACTAAACCAGAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044235XLOC_044235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071168-exon-scaffold_6-1575043694:204103..204234TCONS_00071168-exon-scaffold_6-1575043694:204103..204234Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1575043694:203838..203871TCONS_00071168-exon-scaffold_6-1575043694:203838..203871Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1575043694:202930..203073TCONS_00071168-exon-scaffold_6-1575043694:202930..203073Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1575043694:200703..200945TCONS_00071168-exon-scaffold_6-1575043694:200703..200945Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1575043694:199705..199996TCONS_00071168-exon-scaffold_6-1575043694:199705..199996Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1510915933:204103..204234TCONS_00071168-exon-scaffold_6-1510915933:204103..204234Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1510915933:203838..203871TCONS_00071168-exon-scaffold_6-1510915933:203838..203871Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1510915933:202930..203073TCONS_00071168-exon-scaffold_6-1510915933:202930..203073Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1510915933:200703..200945TCONS_00071168-exon-scaffold_6-1510915933:200703..200945Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1510915933:199705..199996TCONS_00071168-exon-scaffold_6-1510915933:199705..199996Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1491911889:204103..204234TCONS_00071168-exon-scaffold_6-1491911889:204103..204234Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1491911889:203838..203871TCONS_00071168-exon-scaffold_6-1491911889:203838..203871Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1491911889:202930..203073TCONS_00071168-exon-scaffold_6-1491911889:202930..203073Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1491911889:200703..200945TCONS_00071168-exon-scaffold_6-1491911889:200703..200945Clytia hemisphaericaexon
TCONS_00071168-exon-scaffold_6-1491911889:199705..199996TCONS_00071168-exon-scaffold_6-1491911889:199705..199996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:199705..204234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00612675	0.879038	0	0	1.3245	1.60733e-08	19.5545	12.0538	3.61199	14.3428	6.1741	1.02727	0.803138	0	5.68732	8.61337	0.918827	5.85969	8.84696	7.11473	12.6035	24.8375	4.85005e-05	5.58037	1.9557	4.60823	0	0
Blast
[Close]
BLAST of TCONS_00071168 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.373e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:  145 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 573
            L E+++ E+++ F   D DGDG ++  E   ++R++G N T  E++++  + D D N  I F EF      K ++  S + +R  F+  D+D +GY++  E    +  LG  + D+ +  ++   D + DG + ++EF + M 
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
BLAST of TCONS_00071168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM34.373e-1827.97Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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