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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=transcript|length=787bp gtgaaaaatattcttcgaGGATAAGAAGCAAAATGAAACAGCCGAATTAT CCGGTCGGGTATACTACGAAAAAGagACCGTACGGCCTGATGGAGAAAGA ATTAGAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACG GTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTG AATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGA TAAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAA AGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAG GCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGC TTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGTGA TGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGaatTC TGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTT TCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTG GTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTC TGGAACGCgtttaatgttttttaatgACACCCTATTCCTTAGCTCTGGTT TAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCtagcaattagaata ggcagggctaAAAGTGGGCCGACTAAACCAGAGCTTA Run BLAST on NCBI protein sequence of TCONS_00071167-protein >TCONS_00071167-protein ID=TCONS_00071167-protein|Name=TCONS_00071167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
EKYSSRIRSKMKQPNYPVGYTTKKRPYGLMEKELEEYRKYFWQQDVDGDG QLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAK KREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVM GLMDKNNDGMITFQEFCKFMA Run BLAST on NCBI transcript from alignment at scaffold_6:199705..204049- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at scaffold_6:199705..204049- (Clytia hemisphaerica) GTGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTAT
CCGGTCGGGTATACTACGAAAAAGGTCTGCTATTTTTCGGCTGTATAAAG
GTCGTAATCATTCTTGAAATTTTCGGAGAGAGGGGTTTTTTACTTTTCAT
GATTTTCTTCTTTATTTTCTTTTTCTAGAGACCGTACGGCCTGATGGAGA
AAGAATTAGAAGGTAGGTTTTTGTTTCCAAGTTTTTGTTTTTTGTTTGAG
AGGATTTTCATATACGGCTACAATGCTGTTTGATACTGATTTCTTAATTC
GTCGTTTCTCAAAATTCAATTTCGGGTGAAAACCGTAATTTCAGCTCTTC
CACTTTATGTCATCGGGTTTTTTAATTTGGGAGGGGTTTATCGGCTTTCA
GGCTATATTCTAAATCTTATTGTATCATTTTAAAACTTTTAGATCATGAG
ATCCTTAAGTCTTAAGTCTAATGTTAAAACTCAGAGTTAGAACTCTACTT
TCCCACCATCAGTTAAAGCACTTAAAAATCACTTGCTTTTTTGAAATTCT
GCCAAATATTATGATCTGCATTGTAGATAGAATATTTTACATATATATTT
TACGTGGATAGTTCAATAATCAAGGACCTTTTAGCCAGTCTATAACATCA
TCCACTGCTAGCCGGTTCGGAATATTTATTAACTGAACGGAGCATTGGCT
AGAGCGGGAAACCGAGAACCCTTTAATTTGTGGTGCTGAAATCGTAGACA
ACATGGCAATCTCTTCTTGATTCAAATCCTAGTCATTACCTTTAAAATTA
AACTTGCTAGCCTCCAGGGAAAGGTGTGACCTAGCTTTGAAACCTTTTTA
AAGTGCGCTAAAAGGATCATTGCATACACTAGATTGATGATTCCAAAAGA
ACGGTAGCAAAGATTTTCTTTATTATCAAAATTCAATACGATAGTAGACA
AATTCATTTATTTTCTCTATTTTTAGAGTACCGCAAATATTTTTGGCAGC
AGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAACATG
TTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATT
CGCCAAAACTGACGTTGATAGTATGTATCCCAGCTGGAACACAACGTTGT
TTCAATGTTTATCTAACGTTAACGTCAACGTTAGATTAACGTTGAAACAA
CGTTGTGTGCCAGCTATGTATTGATTCCTTTTTAGGGGGCTTTTTTACAC
CCCCCTTCTCACAGACCCGGTGGGATTCTATCAGCTAGTGGGGTTAAAAA
TAACGGTCAAAAACTCGATAAGGATTGATATTCCCATGTTTTTTATGGCT
GGGGATTTAAATTCCATTGTTTTCTAGCCAGAAAATTCTGTGGGAATGGA
AAAAATAGCACAATATTTTACAATTATCGTATCTCCGTTCGCAGTTTGTA
ATAATGAACACTTAATGATTTTACTAGCGAGCACCTCACTAAAAACCGGG
ATTTTTCATCATCAAAGTTCCACTTTGCCGATTTTCGAAAAATAAAAGCC
TTTCAAGTGCTTTGACGCAAATTCGATTATTTTGATACTGCAGGAGCTTC
GAAAGTTATAAGTGACGTCAAAAAATCGAATGTTTAGAGCCCGAAAACCT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGCCCGAAAACCCGGGCTCAAAACATTC
GAAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGCGGGT
GACGTCTAGTATAGGCTAGAAAACCTGGGCTCAAAACATTCGAAAAAGTC
ACAAAGTGGAATAGACGTTAGTTGCGTACAAAAACGCGGGTGACGTCTAG
TATAGGCTATGATTGTATATGGTATAAAAAAAACGGGGAGGATTGGCATG
TGTCAGTCTCGTCGCAATCGTGACGGGATCTTCTAAATAGACACAAGACA
AGGACAGGTCGATGACACTACTGCCTTGCCAAAGATGTTGTCCTCTTCTA
CTGCCTTGCAATCATATTCTCTCTATAGAAGATATACAACTGTTGCTCTC
TAAAATAGACTGACGCACCAGTCAGGCTAACATATCATGCGGGAATAGTG
AGCGTAGTAGGAAATTCTGTCGATGAGAGGTGCGCTTCGCACGAAAGTGG
ACATCGGGCTTATCTGATATTCCGATGGCGCATTGGCGGCCGCCCACGCT
AAAGCTCTAAAGGAGCGGGCCAAAATTTTCCCGACCTTCAGAGCTTTAGC
GTGTCGGAAGAAAATTTCTCCATCGAGTACCAGATAAACATCGGGCTTAA
GTTAGATCGCTTCCAAATAGTTTTTGGGAAGATTTCGTGGGAATTTCCCT
ACTTTCTCAATTCATACCCACCTATTTTAACCCGTTCTCATGCGCAGTTC
CTATTTTACCAAAAACCCCACACAGCCCTCTAACATGGTTTAATTAATAG
ACTATTTCGCTAGTCTCTAAAGATGTCAACTTCCAAAAGTGTTAAAGGGA
CTGAAAAAAATAGTGTTTAATGTACGCCACTTGTTCTCTCTTATCTACCT
GCAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGC
AAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAG
AGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCC
GCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGT
GATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGGTA
CCTTAGCATTTGTTTTCTTTTCATGTTACACATTTCTTTTAATAAAAACA
TCCAAATGTTCTTAACTTTTTGATTTTTAAACCAAATATTATTCTGATTT
TCAGCATTTTGTGAAGATTTATATTTGATTTCTACAGTCTGTTTCATTAA
GTTTAAAGCCTGCAGGGTTAGAGTAGAATCTCTAACCTTTCCCAGGCAAA
AAAAAAAGTGAAGCCACTTATTTCCCATTCAGAATGTGCCTGGAACGCGT
CGCAATCATGACGACAGATTGTATCTAGTGGTTCCTTTGTTTTTGAGGAC
TACATTTTTTGAAATCTAGATCTTAATTTCAATCCAGCGTTTGTGTAAAA
ACCACGCGTGGGCGTTCTGGATTGGAAATAAACGACTTCATTTCCTATCC
AGGAGTCTTGAGCCTAGCCCCTCGGGCTTAGAATAAGTCAATGGTTTGTA
CCTCTAAAGAATCCTGCATTATAACACGCATGCGTAATTTGTCGTTCTTT
AAACATATGTAGTTAAACTGCGTGATAATCAAAGAGGAGTAAATTCGTAC
TTAGGGGTGGACAAACTAACCGGGTCGGGGTTGGGTTATGGACGGCGAAA
TATGTCATATTTTGTGAAATATGTTGTTCTTTTTGTCTATTTTTAGCCAA
TGTAGGATTCTTTAAATTAAGCCTCTCATAAATCTTGTTTTCTTTTGTTT
CAGAATTCTGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGA
TTGGATTTTCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTG
TAAATGTGGTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGC
TTCTACTCTGGAACGCGTTTAATGTTTTTTAATGACACCCTATTCCTTAG
CTCTGGTTTAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCTAGCAA
TTAGAATAGGCAGGGCTAAAAGTGGGCCGACTAAACCAGAGCTTA Coding sequence (CDS) from alignment at scaffold_6:199705..204049- >TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_6:199705..204049- (Clytia hemisphaerica) AATTCTGCAAGTTCATGGCTTAGAAAATTACAGGATCAGCTTCCATGAGT TCGCCGAAGCCTTCATTGCAAAGAAACGGGAACATGTGAGTGGCGATCGG CTACGACGCGTCTTTCAAGAGGCCGATCGTGACCGTGATGGTTACCTGAC AACAGATGAGTGTTTGGCCGCTTTAAAACAACTCGGTCACGTAATGGATG ATAAAGGCATACGACGTGTGATGGGTTTGATGGATAAGAATAATGACGGA ATGATAACGTTTCAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGA CGGAGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAA TGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACT GACGTTGATAAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGGAAAAA TATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGG GTATACTACGAAAAAGAATTCTGCAAGTTCATGGCTTAGAAAATTACAGG ATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACA TGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACC GTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTC GGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATGGA TAAGAATAATGACGGAATGATAACGTTTCAAGAGTACCGCAAATATTTTT GGCAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAAT AACATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAA TTTATTCGCCAAAACTGACGTTGATAAGACCGTACGGCCTGATGGAGAAA GAATTAGAAGGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGC CGAATTATCCGGTCGGGTATACTACGAAAAAGAATTCTGCAAGTTCATGG CTTAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTG CAAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAA GAGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGC CGCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTG TGATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGAG TACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACGGTCAACTATC AAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTGAATCTTACTC GTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGATAAGACCGTA CGGCCTGATGGAGAAAGAATTAGAAGGAAAAATATTCTTCGAGGATAAGA AGCAAAATGAAACAGCCGAATTATCCGGTCGGGTATACTACGAAAAAGAA TTCTGCAAGTTCATGGCTTAGAAAATTACAGGATCAGCTTCCATGAGTTC GCCGAAGCCTTCATTGCAAAGAAACGGGAACATGTGAGTGGCGATCGGCT ACGACGCGTCTTTCAAGAGGCCGATCGTGACCGTGATGGTTACCTGACAA CAGATGAGTGTTTGGCCGCTTTAAAACAACTCGGTCACGTAATGGATGAT AAAGGCATACGACGTGTGATGGGTTTGATGGATAAGAATAATGACGGAAT GATAACGTTTCAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACG GAGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATG GGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGA CGTTGATAAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGGAAAAATA TTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGGGT ATACTACGAAAAAGAATTCTGCAAGTTCATGGCTTAGAAAATTACAGGAT CAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACATG TGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACCGT GATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTCGG TCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATGGATA AGAATAATGACGGAATGATAACGTTTCAAGAGTACCGCAAATATTTTTGG CAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAA CATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATT TATTCGCCAAAACTGACGTTGATAAGACCGTACGGCCTGATGGAGAAAGA ATTAGAAGGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCG AATTATCCGGTCGGGTATACTACGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071167-exon-scaffold_6-1575043694:203976..204049 | TCONS_00071167-exon-scaffold_6-1575043694:203976..204049 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1575043694:203838..203871 | TCONS_00071167-exon-scaffold_6-1575043694:203838..203871 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1575043694:202930..203073 | TCONS_00071167-exon-scaffold_6-1575043694:202930..203073 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1575043694:200703..200945 | TCONS_00071167-exon-scaffold_6-1575043694:200703..200945 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1575043694:199705..199996 | TCONS_00071167-exon-scaffold_6-1575043694:199705..199996 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1510915933:203976..204049 | TCONS_00071167-exon-scaffold_6-1510915933:203976..204049 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1510915933:203838..203871 | TCONS_00071167-exon-scaffold_6-1510915933:203838..203871 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1510915933:202930..203073 | TCONS_00071167-exon-scaffold_6-1510915933:202930..203073 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1510915933:200703..200945 | TCONS_00071167-exon-scaffold_6-1510915933:200703..200945 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1510915933:199705..199996 | TCONS_00071167-exon-scaffold_6-1510915933:199705..199996 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1491911889:203976..204049 | TCONS_00071167-exon-scaffold_6-1491911889:203976..204049 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1491911889:203838..203871 | TCONS_00071167-exon-scaffold_6-1491911889:203838..203871 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1491911889:202930..203073 | TCONS_00071167-exon-scaffold_6-1491911889:202930..203073 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1491911889:200703..200945 | TCONS_00071167-exon-scaffold_6-1491911889:200703..200945 | Clytia hemisphaerica | exon |
TCONS_00071167-exon-scaffold_6-1491911889:199705..199996 | TCONS_00071167-exon-scaffold_6-1491911889:199705..199996 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:199705..204049 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00071167 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 4.222e-18 Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 3
Query: 87 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 515
L E+++ E+++ F D DGDG ++ E ++R++G N T E++++ + D D N I F EF K ++ S + +R F+ D+D +GY++ E + LG + D+ + ++ D + DG + ++EF + M
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147
The following BLAST results are available for this feature:
|