TCONS_00071167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071167
Unique NameTCONS_00071167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=transcript|length=787bp
gtgaaaaatattcttcgaGGATAAGAAGCAAAATGAAACAGCCGAATTAT
CCGGTCGGGTATACTACGAAAAAGagACCGTACGGCCTGATGGAGAAAGA
ATTAGAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACG
GTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTG
AATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGA
TAAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAA
AGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAG
GCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGC
TTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGTGA
TGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGaatTC
TGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGATTGGATTT
TCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTGTAAATGTG
GTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGCTTCTACTC
TGGAACGCgtttaatgttttttaatgACACCCTATTCCTTAGCTCTGGTT
TAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCtagcaattagaata
ggcagggctaAAAGTGGGCCGACTAAACCAGAGCTTA
Run BLAST on NCBI

protein sequence of TCONS_00071167-protein

>TCONS_00071167-protein ID=TCONS_00071167-protein|Name=TCONS_00071167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
EKYSSRIRSKMKQPNYPVGYTTKKRPYGLMEKELEEYRKYFWQQDVDGDG
QLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAK
KREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVM
GLMDKNNDGMITFQEFCKFMA
Run BLAST on NCBI

transcript from alignment at scaffold_6:199705..204049-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at scaffold_6:199705..204049- (Clytia hemisphaerica)
GTGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTAT CCGGTCGGGTATACTACGAAAAAGGTCTGCTATTTTTCGGCTGTATAAAG GTCGTAATCATTCTTGAAATTTTCGGAGAGAGGGGTTTTTTACTTTTCAT GATTTTCTTCTTTATTTTCTTTTTCTAGAGACCGTACGGCCTGATGGAGA AAGAATTAGAAGGTAGGTTTTTGTTTCCAAGTTTTTGTTTTTTGTTTGAG AGGATTTTCATATACGGCTACAATGCTGTTTGATACTGATTTCTTAATTC GTCGTTTCTCAAAATTCAATTTCGGGTGAAAACCGTAATTTCAGCTCTTC CACTTTATGTCATCGGGTTTTTTAATTTGGGAGGGGTTTATCGGCTTTCA GGCTATATTCTAAATCTTATTGTATCATTTTAAAACTTTTAGATCATGAG ATCCTTAAGTCTTAAGTCTAATGTTAAAACTCAGAGTTAGAACTCTACTT TCCCACCATCAGTTAAAGCACTTAAAAATCACTTGCTTTTTTGAAATTCT GCCAAATATTATGATCTGCATTGTAGATAGAATATTTTACATATATATTT TACGTGGATAGTTCAATAATCAAGGACCTTTTAGCCAGTCTATAACATCA TCCACTGCTAGCCGGTTCGGAATATTTATTAACTGAACGGAGCATTGGCT AGAGCGGGAAACCGAGAACCCTTTAATTTGTGGTGCTGAAATCGTAGACA ACATGGCAATCTCTTCTTGATTCAAATCCTAGTCATTACCTTTAAAATTA AACTTGCTAGCCTCCAGGGAAAGGTGTGACCTAGCTTTGAAACCTTTTTA AAGTGCGCTAAAAGGATCATTGCATACACTAGATTGATGATTCCAAAAGA ACGGTAGCAAAGATTTTCTTTATTATCAAAATTCAATACGATAGTAGACA AATTCATTTATTTTCTCTATTTTTAGAGTACCGCAAATATTTTTGGCAGC AGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAACATG TTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATT CGCCAAAACTGACGTTGATAGTATGTATCCCAGCTGGAACACAACGTTGT TTCAATGTTTATCTAACGTTAACGTCAACGTTAGATTAACGTTGAAACAA CGTTGTGTGCCAGCTATGTATTGATTCCTTTTTAGGGGGCTTTTTTACAC CCCCCTTCTCACAGACCCGGTGGGATTCTATCAGCTAGTGGGGTTAAAAA TAACGGTCAAAAACTCGATAAGGATTGATATTCCCATGTTTTTTATGGCT GGGGATTTAAATTCCATTGTTTTCTAGCCAGAAAATTCTGTGGGAATGGA AAAAATAGCACAATATTTTACAATTATCGTATCTCCGTTCGCAGTTTGTA ATAATGAACACTTAATGATTTTACTAGCGAGCACCTCACTAAAAACCGGG ATTTTTCATCATCAAAGTTCCACTTTGCCGATTTTCGAAAAATAAAAGCC TTTCAAGTGCTTTGACGCAAATTCGATTATTTTGATACTGCAGGAGCTTC GAAAGTTATAAGTGACGTCAAAAAATCGAATGTTTAGAGCCCGAAAACCT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNAGCCCGAAAACCCGGGCTCAAAACATTC GAAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGCGGGT GACGTCTAGTATAGGCTAGAAAACCTGGGCTCAAAACATTCGAAAAAGTC ACAAAGTGGAATAGACGTTAGTTGCGTACAAAAACGCGGGTGACGTCTAG TATAGGCTATGATTGTATATGGTATAAAAAAAACGGGGAGGATTGGCATG TGTCAGTCTCGTCGCAATCGTGACGGGATCTTCTAAATAGACACAAGACA AGGACAGGTCGATGACACTACTGCCTTGCCAAAGATGTTGTCCTCTTCTA CTGCCTTGCAATCATATTCTCTCTATAGAAGATATACAACTGTTGCTCTC TAAAATAGACTGACGCACCAGTCAGGCTAACATATCATGCGGGAATAGTG AGCGTAGTAGGAAATTCTGTCGATGAGAGGTGCGCTTCGCACGAAAGTGG ACATCGGGCTTATCTGATATTCCGATGGCGCATTGGCGGCCGCCCACGCT AAAGCTCTAAAGGAGCGGGCCAAAATTTTCCCGACCTTCAGAGCTTTAGC GTGTCGGAAGAAAATTTCTCCATCGAGTACCAGATAAACATCGGGCTTAA GTTAGATCGCTTCCAAATAGTTTTTGGGAAGATTTCGTGGGAATTTCCCT ACTTTCTCAATTCATACCCACCTATTTTAACCCGTTCTCATGCGCAGTTC CTATTTTACCAAAAACCCCACACAGCCCTCTAACATGGTTTAATTAATAG ACTATTTCGCTAGTCTCTAAAGATGTCAACTTCCAAAAGTGTTAAAGGGA CTGAAAAAAATAGTGTTTAATGTACGCCACTTGTTCTCTCTTATCTACCT GCAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGC AAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAG AGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGCC GCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTGT GATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGGTA CCTTAGCATTTGTTTTCTTTTCATGTTACACATTTCTTTTAATAAAAACA TCCAAATGTTCTTAACTTTTTGATTTTTAAACCAAATATTATTCTGATTT TCAGCATTTTGTGAAGATTTATATTTGATTTCTACAGTCTGTTTCATTAA GTTTAAAGCCTGCAGGGTTAGAGTAGAATCTCTAACCTTTCCCAGGCAAA AAAAAAAGTGAAGCCACTTATTTCCCATTCAGAATGTGCCTGGAACGCGT CGCAATCATGACGACAGATTGTATCTAGTGGTTCCTTTGTTTTTGAGGAC TACATTTTTTGAAATCTAGATCTTAATTTCAATCCAGCGTTTGTGTAAAA ACCACGCGTGGGCGTTCTGGATTGGAAATAAACGACTTCATTTCCTATCC AGGAGTCTTGAGCCTAGCCCCTCGGGCTTAGAATAAGTCAATGGTTTGTA CCTCTAAAGAATCCTGCATTATAACACGCATGCGTAATTTGTCGTTCTTT AAACATATGTAGTTAAACTGCGTGATAATCAAAGAGGAGTAAATTCGTAC TTAGGGGTGGACAAACTAACCGGGTCGGGGTTGGGTTATGGACGGCGAAA TATGTCATATTTTGTGAAATATGTTGTTCTTTTTGTCTATTTTTAGCCAA TGTAGGATTCTTTAAATTAAGCCTCTCATAAATCTTGTTTTCTTTTGTTT CAGAATTCTGCAAGTTCATGGCTTAGAGGTTGGAACGTTCGATGGAAGGA TTGGATTTTCATAAGCCAAAAGGGATGGCTTTTTTGTATATAGTTACTTG TAAATGTGGTTAAAATTGTTTCAATAAAAGAAAGTCTTTAACTTCCAAGC TTCTACTCTGGAACGCGTTTAATGTTTTTTAATGACACCCTATTCCTTAG CTCTGGTTTAGTCGGCCCACTTTTAGCCCACTTTATGCCAACTCTAGCAA TTAGAATAGGCAGGGCTAAAAGTGGGCCGACTAAACCAGAGCTTA

Coding sequence (CDS) from alignment at scaffold_6:199705..204049-

>TCONS_00071167 ID=TCONS_00071167|Name=TCONS_00071167|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_6:199705..204049- (Clytia hemisphaerica)
AATTCTGCAAGTTCATGGCTTAGAAAATTACAGGATCAGCTTCCATGAGT
TCGCCGAAGCCTTCATTGCAAAGAAACGGGAACATGTGAGTGGCGATCGG
CTACGACGCGTCTTTCAAGAGGCCGATCGTGACCGTGATGGTTACCTGAC
AACAGATGAGTGTTTGGCCGCTTTAAAACAACTCGGTCACGTAATGGATG
ATAAAGGCATACGACGTGTGATGGGTTTGATGGATAAGAATAATGACGGA
ATGATAACGTTTCAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGA
CGGAGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAA
TGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACT
GACGTTGATAAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGGAAAAA
TATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGG
GTATACTACGAAAAAGAATTCTGCAAGTTCATGGCTTAGAAAATTACAGG
ATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACA
TGTGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACC
GTGATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTC
GGTCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATGGA
TAAGAATAATGACGGAATGATAACGTTTCAAGAGTACCGCAAATATTTTT
GGCAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAAT
AACATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAA
TTTATTCGCCAAAACTGACGTTGATAAGACCGTACGGCCTGATGGAGAAA
GAATTAGAAGGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGC
CGAATTATCCGGTCGGGTATACTACGAAAAAGAATTCTGCAAGTTCATGG
CTTAGAAAATTACAGGATCAGCTTCCATGAGTTCGCCGAAGCCTTCATTG
CAAAGAAACGGGAACATGTGAGTGGCGATCGGCTACGACGCGTCTTTCAA
GAGGCCGATCGTGACCGTGATGGTTACCTGACAACAGATGAGTGTTTGGC
CGCTTTAAAACAACTCGGTCACGTAATGGATGATAAAGGCATACGACGTG
TGATGGGTTTGATGGATAAGAATAATGACGGAATGATAACGTTTCAAGAG
TACCGCAAATATTTTTGGCAGCAGGACGTTGACGGAGACGGTCAACTATC
AAAGAATGAATTCAATAACATGTTACGTACAATGGGTTTGAATCTTACTC
GTCAAGAAGTTGAAAATTTATTCGCCAAAACTGACGTTGATAAGACCGTA
CGGCCTGATGGAGAAAGAATTAGAAGGAAAAATATTCTTCGAGGATAAGA
AGCAAAATGAAACAGCCGAATTATCCGGTCGGGTATACTACGAAAAAGAA
TTCTGCAAGTTCATGGCTTAGAAAATTACAGGATCAGCTTCCATGAGTTC
GCCGAAGCCTTCATTGCAAAGAAACGGGAACATGTGAGTGGCGATCGGCT
ACGACGCGTCTTTCAAGAGGCCGATCGTGACCGTGATGGTTACCTGACAA
CAGATGAGTGTTTGGCCGCTTTAAAACAACTCGGTCACGTAATGGATGAT
AAAGGCATACGACGTGTGATGGGTTTGATGGATAAGAATAATGACGGAAT
GATAACGTTTCAAGAGTACCGCAAATATTTTTGGCAGCAGGACGTTGACG
GAGACGGTCAACTATCAAAGAATGAATTCAATAACATGTTACGTACAATG
GGTTTGAATCTTACTCGTCAAGAAGTTGAAAATTTATTCGCCAAAACTGA
CGTTGATAAGACCGTACGGCCTGATGGAGAAAGAATTAGAAGGAAAAATA
TTCTTCGAGGATAAGAAGCAAAATGAAACAGCCGAATTATCCGGTCGGGT
ATACTACGAAAAAGAATTCTGCAAGTTCATGGCTTAGAAAATTACAGGAT
CAGCTTCCATGAGTTCGCCGAAGCCTTCATTGCAAAGAAACGGGAACATG
TGAGTGGCGATCGGCTACGACGCGTCTTTCAAGAGGCCGATCGTGACCGT
GATGGTTACCTGACAACAGATGAGTGTTTGGCCGCTTTAAAACAACTCGG
TCACGTAATGGATGATAAAGGCATACGACGTGTGATGGGTTTGATGGATA
AGAATAATGACGGAATGATAACGTTTCAAGAGTACCGCAAATATTTTTGG
CAGCAGGACGTTGACGGAGACGGTCAACTATCAAAGAATGAATTCAATAA
CATGTTACGTACAATGGGTTTGAATCTTACTCGTCAAGAAGTTGAAAATT
TATTCGCCAAAACTGACGTTGATAAGACCGTACGGCCTGATGGAGAAAGA
ATTAGAAGGAAAAATATTCTTCGAGGATAAGAAGCAAAATGAAACAGCCG
AATTATCCGGTCGGGTATACTACGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044235XLOC_044235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071167-exon-scaffold_6-1575043694:203976..204049TCONS_00071167-exon-scaffold_6-1575043694:203976..204049Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1575043694:203838..203871TCONS_00071167-exon-scaffold_6-1575043694:203838..203871Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1575043694:202930..203073TCONS_00071167-exon-scaffold_6-1575043694:202930..203073Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1575043694:200703..200945TCONS_00071167-exon-scaffold_6-1575043694:200703..200945Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1575043694:199705..199996TCONS_00071167-exon-scaffold_6-1575043694:199705..199996Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1510915933:203976..204049TCONS_00071167-exon-scaffold_6-1510915933:203976..204049Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1510915933:203838..203871TCONS_00071167-exon-scaffold_6-1510915933:203838..203871Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1510915933:202930..203073TCONS_00071167-exon-scaffold_6-1510915933:202930..203073Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1510915933:200703..200945TCONS_00071167-exon-scaffold_6-1510915933:200703..200945Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1510915933:199705..199996TCONS_00071167-exon-scaffold_6-1510915933:199705..199996Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1491911889:203976..204049TCONS_00071167-exon-scaffold_6-1491911889:203976..204049Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1491911889:203838..203871TCONS_00071167-exon-scaffold_6-1491911889:203838..203871Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1491911889:202930..203073TCONS_00071167-exon-scaffold_6-1491911889:202930..203073Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1491911889:200703..200945TCONS_00071167-exon-scaffold_6-1491911889:200703..200945Clytia hemisphaericaexon
TCONS_00071167-exon-scaffold_6-1491911889:199705..199996TCONS_00071167-exon-scaffold_6-1491911889:199705..199996Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071167-proteinTCONS_00071167-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:199705..204049 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00317539 0.00550256 0 2.61585 0 0 4.22213e-06 0 4.71733 6.47211 0.00685525 5.36156 0 0 9.22422 0.0920971 6.20454e-06 2.95282 0 2.87885 0 5.0441 19.219 23.2772 1.86526e-08 2.84395e-06 0.00177419 0 0.00417543 6.53536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00071167 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.222e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 3
Query:   87 LMEKELEEYRKYFWQQDVDGDGQLSKNEFNNMLRTMGLNLTRQEVENLFAKTDVDKNYRISFHEFAEAFIAKKREHVSGDRLRRVFQEADRDRDGYLTTDECLAALKQLGHVMDDKGIRRVMGLMDKNNDGMITFQEFCKFMA 515
            L E+++ E+++ F   D DGDG ++  E   ++R++G N T  E++++  + D D N  I F EF      K ++  S + +R  F+  D+D +GY++  E    +  LG  + D+ +  ++   D + DG + ++EF + M 
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147          
The following BLAST results are available for this feature:
BLAST of TCONS_00071167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM34.222e-1827.97Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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