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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071151 ID=TCONS_00071151|Name=TCONS_00071151|organism=Clytia hemisphaerica|type=transcript|length=918bp
AAAATCACGTGGACGCTTCATTAAAAAGCCATTAAAAGATGAGTACCCAC
TCAACTAATTGGAACGTGAGAACTATTTATTGACCAACCATGACCAAAAG
ATACATACAGATGTGTAAATAAATGAAGGAGATTGAAATAGTGGGAGAAT
ATAAAAGTCGAATTTGTTAATTTCACATTCTTTTAAACCAGTGAGCAATT
GCGAACACAGAATACTGAGGCAAATTGAACAATTGCATTACAGACATAAA
AAATGCTGTTCCTTATTGCGTGTATAGCTGCCTATGTGAATTTTTCGGTT
GCTTTGGATAATTCTACGTGTCCGATCGTAAAGAAGACCAACGGTTGCAG
TATCCCGTTGGATTTATCGTTCCCGTACAAAGAAGTATTTAAAGACGTTT
GCAACATGCATGATGTCTGCTATGTTTGTGGGAAAACCAACAACTGGACA
CGAGCCGAATGTGATTTAGCCTTTCTTAAAGATCTGAGAAACTACTGCAA
CACGACAACTCAATTCGCTGATAGTCACGTAACATTCCAAAAAGACAAAC
TTCGAAGTATCCTACAAAACGCTGTCAAGAAAGCTGGCCTAACTTCACAA
GACGGTATTGACCTGAAGAAAGAAGCTTTCGAAATCTTTATGATGGTTGT
AGCCTGGCGATACATCCAGGATAAGCACAAAGCGTGCCTACATGGAGCAA
ACCTCTACTACAAGGCTGTCAATGCATTCGGTGCATCAAGTTATGCCAAA
AGACCAAAACCAATCTGTACGCACGCATGCGCAAAGAAGCTTGGTCACCC
TTATTGAGAGTAAAATTTGTAGGAAATATTGTATAGCAGGTTATagtttt
tcattgaaatataaatttttaacaacatcTGAATGACATATAAATGAATT
CCTTCGTAAATACAAGAT Run BLAST on NCBI transcript from alignment at scaffold_6:232909..234412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071151 ID=TCONS_00071151|Name=TCONS_00071151|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_6:232909..234412+ (Clytia hemisphaerica)
AAAATCACGTGGACGCTTCATTAAAAAGCCATTAAAAGATGAGTACCCAC
TCAACTAATTGGAACGTGAGAACTATTTATTGACCAACCATGACCAAAAG
ATACATACAGATGTGTAAATAAATGAAGGAGATTGAAATAGTGGGAGAAT
ATAAAAGTCGAATTTGTTAATTTCACATTCTTTTAAACCAGTGAGCAATT
GCGAACACAGAATACTGAGGCAAATTGAACAATTGCATTACAGACATAAA
AAATGCTGTTCCTTATTGCGTGTATAGCTGCCTATGTGAATTTTTCGGTT
GCTTTGGATAATTCTACGTGTCCGATCGTAAAGAAGACCAACGGTTGCAG
TATCCCGTTGGATTTATCGTTCCCGTACAAAGAAGTATTTAAAGACGTTT
GCAACATGCATGATGTCTGCTATGTTTGTGTAAGTTAGAAACTTTCATTC
TTTTCGGAAAAACTGACTGACTCGATTACTCGATACGACATGAAACGAAA
TTGATAGAAAAGTTAAAAGTGTCTATTTATTTCTGATATCTGAGTCGAAA
TCCTGTTACCTGGAAGGTCTCCTAGTGAAAATTCGACAATTTGATTGAGG
ATTCGCACTTTGCAAAATACTTattaattttcatatttcataTTAATATT
TCATAAACTAAGATCCTGTATCTACAGTGGAGCCTACGTAATTCGAACCC
GCACgaagaacacaaatttgttaGAGTTAAGGAAAGTTTATAAGGCaatt
gttaactgaaaggacCATAAAACTTGAGAGTTGAGAAGACATTCGGATTA
TAGAGGTTCGATTCAAAGTGACTACACTGTATAAAAAAACCTGAAGAATT
GGAGCTCGAACCCACGCAAGATTTCAAACCACACGATCGGATTTCAATTA
TAGAATCTCTCTCAGTACCATTATTAAGATTTCCTTCTTTTGATTCTTAT
AGGGGAAAACCAACAACTGGACACGAGCCGAATGTGATTTAGCCTTTCTT
AAAGATCTGAGAAACTACTGCAACACGACAACTCAATTCGCTGATAGTCA
CGTAACATTCCAAAAAGACAAACTTCGAAGTATCCTACAAAACGCTGTCA
AGAAAGCTGGCCTAACTTCACAAGACGGTATTGACCTGAAGAAAGAAGCT
TTCGAAATCTTTATGATGGTTGTAGCCTGGCGATACATCCAGGATAAGCA
CAAAGCGTGCCTACATGGAGCAAACCTCTACTACAAGGCTGTCAATGCAT
TTGGTGCATNACACATAGCGTGCCTACATGGAGCAAACATCTATTACAAG
GCTGTCAATGCATTCGGTGCATCAAGTTATGCCAAAAGACCAAAACCAAT
CTGTACGCACGCATGCGCAAAGAAGCTTGGTCACCCTTATTGAGAGTAAA
ATTTGTAGGAAATATTGTATAGCAGGTTATagtttttcattgaaatataa
atttttaacaacatcTGAATGACATATAAATGAATTCCTTCGTAAATACA
AGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071151-exon-scaffold_6-1491911889:232909..233337 | TCONS_00071151-exon-scaffold_6-1491911889:232909..233337 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1510915933:232909..233337 | TCONS_00071151-exon-scaffold_6-1510915933:232909..233337 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1575043694:232909..233337 | TCONS_00071151-exon-scaffold_6-1575043694:232909..233337 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1491911889:233861..234145 | TCONS_00071151-exon-scaffold_6-1491911889:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1510915933:233861..234145 | TCONS_00071151-exon-scaffold_6-1510915933:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1575043694:233861..234145 | TCONS_00071151-exon-scaffold_6-1575043694:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1491911889:234209..234412 | TCONS_00071151-exon-scaffold_6-1491911889:234209..234412 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1510915933:234209..234412 | TCONS_00071151-exon-scaffold_6-1510915933:234209..234412 | Clytia hemisphaerica | exon |
| TCONS_00071151-exon-scaffold_6-1575043694:234209..234412 | TCONS_00071151-exon-scaffold_6-1575043694:234209..234412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:232909..234412 + |
Blast
The following BLAST results are available for this feature:
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