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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071150 ID=TCONS_00071150|Name=TCONS_00071150|organism=Clytia hemisphaerica|type=transcript|length=713bp
TTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATACGAAAATG
TGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCACCATGAC
AACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTAGTGTGC
CATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCATGCTTA
AATCACGATGTTTGCTATCGATGTGGGAAAACCAACAACTGGACACGAGC
CGAATGTGATTTAGCCTTTCTTAAAGATCTGAGAAACTACTGCAACACGA
CAACTCAATTCGCTGATAGTCACGTAACATTCCAAAAAGACAAACTTCGA
AGTATCCTACAAAACGCTGTCAAGAAAGCTGGCCTAACTTCACAAGACGG
TATTGACCTGAAGAAAGAAGCTTTCGAAATCTTTATGATGGTTGTAGCCT
GGCGATACATCCAGGATAAGCACAAAGCGTGCCTACATGGAGCAAACCTC
TACTACAAGGCTGTCAATGCATTCGGTGCATCAAGTTATGCCAAAAGACC
AAAACCAATCTGTACGCACGCATGCGCAAAGAAGCTTGGTCACCCTTATT
GAGAGTAAAATTTGTAGGAAATATTGTATAGCAGGTTATagtttttcatt
gaaatataaatttttaacaacatcTGAATGACATATAAATGAATTCCTTC
GTAAATACAAGAT Run BLAST on NCBI transcript from alignment at scaffold_6:225795..234412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071150 ID=TCONS_00071150|Name=TCONS_00071150|organism=Clytia hemisphaerica|type=transcript|length=8618bp|location=Sequence derived from alignment at scaffold_6:225795..234412+ (Clytia hemisphaerica)
TTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATACGAAAATG
TGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCACCATGAC
AACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTAGTGTGC
CATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCATGCTTA
AATCACGATGTTTGCTATCGATGTGTAAGTAGGGTTTTAACACTTATATA
GCCTAATCTTTATCGATGTGTAAGTAGGGCTTTAACACTTNCTTTTGATC
TAACGTTTTTAAAAGGTAATCAGGAGCGGGAGGTTACAGATCTCGTATAC
AAAGAATCTTATcggtcctttttacgccggcccttattagcGTTATCTTT
TCGATACTGGCGTAATTAGGGCCGGTGTAACGGCTAAAAAATAGAACGAG
ATGgaatttttacaagctcttatttgatttggttggtcgttaactagtaa
taaaacaattttgttactttttctaaagaacgcgtcatttttattacctt
atcggggaaaacttggtcggggaaaagtgacgaaattttggccaagtgac
gaatatttttccccaaCAAAAATTTTCCCGGCCTTAATgtgtttaccaac
taccagcaagtgaggaatatttttccccgacaaaaattttccccgacacG
AAGTTTTCCCCAATTAGTTACTTCAAATGACTTTTATTATTaaaatatct
tataaaaactccatcacTTGCCACTAAATACTCCTGAGGTTATTATAGAG
TAGCAATACGACATAAAACCCCGTATCTTGATGAAAAAGTGCCTGTTTTA
CAAACTTTTAaaggaatttttgttttgtatatTTTAACTTCGAAGAGAAA
AGACAGTGAAAAGAAACAATACAAACAACCCTTGATGTCTTCCCATCCCT
CTCAAATcaccatacacgtttttttttataagaacgtcaaaaattttcga
agccttcggatgttcttagttttttggatttgaagcctaaaaatgttctt
aaaatgttcttattttcagcattttttgagcattttgatgtaatttctta
agaaattgcatgtttttaagtctccaaggccttagaatgttcttagaata
tgttcttaaatttttgggcctcgaagccttatgttcttatatagtttgtt
cttataaaaaaaaaacgtgtacaactGATTCTATTTATTCAACGTTTCTT
CACAGGGTGTAACATACAGTTGGTCTCAAAAAGTATGTGACGATGGTTTC
AAGCGAATCATGCACGAAAAATGTGATGAAAACTTTGTTAACGGTGGTAG
CCGTAAAAAGCGATTTCTAAGCtctctgaaaagaaaatatcaacgATTGA
GagaaaagtatcaaaaattgaagatttttaagGAGAAGATCAAAGCTGGT
TGGAGAGAAGCAAAGAAAAATGCAAGTTCTCGAGATGAAGTTGAACGAAT
CACAAAAGGACTTTGGGACATTATCAAGATaacaacaaaattttattttg
atattgatgattctgatgagTTAGATAAATGTAAATTGGCAACCGATATC
TTTTACCGATCCGTAGACGTGTTTGGAGTTTATCGTTACCGGTACACGAA
CGAAGCGTACTGCCAGGAAAAATGCGCTCGGCAACTAGGCTATCCTTACG
CTAACAATGTATATGTTACGATCTAGAGTTTGagacattgagtttcaagc
ctgaagggctagatgcgagactcctggatagaaaatgaaaccacttattt
cccatccagaacgcccgctcGCTCgcagtttttacacaaacgccggattg
aaactaaaatctatcgctagatttcaaaaatgtagtcctccaaaacaaag
gaaccgctagatacaatccgtcatCATGATTACAGCGTTCTATGcgtgtt
ttggatgggaaataggtGGCTTCAATTtccttgcctgagaagggttaaag
ttttgcccttcgggcttgaaactcaatggtttgaGCTAACCGTGGCATTT
TTAATTAGGCTTGTAAATGTGAAATATGATATGACAATAATACTCATTAT
GAAATTGAAACTTCACGCTTACATTATTCTAAAACTAAATGTGCCCATAA
AAGGTAATACGAGCCCGATCCTACAGTATTGTACTTAGCTGTGCTAGTTT
ATTTGACTAGCTGTATGCTTAAGATTTCATTCATTTCTTCAAATAAcctc
tttattaaaaaaataccaACGGAAGTAAAATGTAGAGTATAGAGATGTGT
GGACGCTTTCTTCTTTTGAAgattgcgaaattaaatttctgAAACCAGCT
AATAGAATTTAAACATTTAAGGTTCCTACCCACAAAATTTGTGGTCAAGC
CTGTGTAtgcaacatttttttggaaaacctAATAATTATAAANATAAACC
AAAGGCTACTTGAAGTCAAGCCTGTATAtgcaacatttttttggaaaacc
tAATAATTATAAACCTGTAGGTAAAAACAGCCATTGAGTAATTCCTGAAA
TACCACGTCTATTATACTGCGGtagaattttttgtgaaattttgctttca
aagtacttcaaaagattttttttcgctcttgttgtttatcaaagaaattt
atcaaaataaatattGCCAATTTCACAAATGaattttatgactcaaagta
ataaagaaaatcattaaaaaaacattcgaacgttcgattatggaAGTGTT
TTATGTGAATCGTTCGACTATTTACATGATTCATATTTCTAAGATATTTA
ATCAATATATCAACTATGGTATTATTTGAAAGCCATATACCTTACTTAGA
TGGGATCGTAAATCTTTTAATCTGAATCCTCACTAGATAAGAGCTATGAC
CAAGATTTTCCAGGGAggcaaaatgatctttttagaATGTGTATACACGT
CGGTGGTCTGTAGGGTCAAGAAAACTGGGCGTGAAAGAGCGTgtaaagaa
aatatctttttgaaaatgtttgaaggCGATCAAGATCAGGGAGTGACCAA
ACACCTAATCACAAGATGAAACAAGACATATATGAAGTAACATTGCTTTG
AGATAAATAAGCGTAAAAAAAGTGATgaccaaaaaacaattttgagaaaa
acagCATACTTCTAGCATTCAAACTTTCGCAAGaggtcaaaaatcgaagt
tTTAGAACTCAATCAAAAGACACGTCCCTGTCTCAGGGAACAAGCAAGAA
GATTTTAGCCtggataaaaaaatgaaaaacctaaATTACAATATGTACTT
CCGAAGAATGAaaatattacattttattgtttatactttaatcgtagaaa
ttttagcgagactaattttagcgtatattagcgagtcaggaaaatcttga
ttttttttggatttattttagcgaatcacgatttcaaaaaatttcgcgtg
gataaattttagcgaaaactcgtattacattattgattgatttcgttttc
tagcatttctttgcagtGAAACCCTtactattgataaaaatgtatcaagg
caatataaccagaaatttcgcgcggataaattttagcgttctggcgattc
ggcgtgttttagcgagatttattttagcgagaatagggaaaactcgctaa
aacgctaaaattagtctcgctaaaatttctacgattaaaacAGAGTTTGT
tgtcaaaaacaacaacaaaaaagtataCAGAATTATAGGCAAAGCGAGGT
AAAGTAAAAAAGGGTAAAGTAAAAAAGGGTAGCCAGTCGTTTCCTACATA
AGTCGCGCGGcccgcgtggttttcatacGCTGGATTGGAAGTAGAGAGAA
ATATACCAGAAAATATATAACCCCCTCCCCCAAAAAAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNaagtcactcgattcgcaagttgcaagcaa
aatatttatagggtcacacactagaaattgcaagttaaaatagattcata
atcaattcgtaaatgtaaaccTCGCGAAACCCGCTCAGGTTCAGGAAGAC
CGAGCCTCTTTAGAGATACACTCAAACACTTCAGGTGTATACAAACTTAC
GACGTTTACTTCTacggatttgaggaaaattatatggtttttttcatgaa
tcgttgtgaaaagttcaataatcatttgtccgccctgagccttgagtatt
tttatttcttagtttttgttttagactCGTTTTACTTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtttttgttatgatccagcactccta
aatactcctccgtatgggtgtttgtgccaatgctagatcagcatttcata
aatataccatgcgtcgttccctttaaacaaactttaaacatcactcggtt
tattgagacagagatgtgaaatacaaaggatttcaagactagaatttaat
agaaataagttgacttatgtagtttcaaaattcaataaccaGATAACCAT
ATTAATTAGGAGTATTGTATCATTACATTGCatcgtaaattctgaaaaat
ttaacaaagttccaaaattatatctaaactattagcgctgtaaaatcctg
agataaaaataaagaaaaaacagataaaaaaaactgagatatagaaagta
ttcttcaacgattctacaaagtaaaacctctaaattttactggctgtgat
ttttttcaaagttgggaaacTCTTAGCTTAAGTTTGCTGTGGAGgcaagt
acatgttttttttttataagcattgcacttataagcatatctaggctcag
atatcgggaaaaattaagcatatggcaagcattatctcgagcctacgaaa
aatgttttttcctgattttggcttgttttggctggaattttNNNNNNNNC
TTACtcgagttgttgacaaacaggagcaaactcttcacataaaaagtaaa
aaatctttgacttttttctcggctgtagcacaggaatttaaaacagttta
aatgcatccataaacataatgtcatgttttgtcgttgtatttcgacattt
tacaagtcattaccattaattaccattaccaacaataaaatcttttaaaa
tacaatcacacgtcaatgttctatttctctGGACCACATGCGTATTCCCa
gtattcataaacaacaaacaacaaccaaaGATCCCACATTATCGAGGGTC
ggtcaagccaaaatttcataaacaacgacaaacaaacatttctcccTCCA
CTGAATaaggggaggaataaattcttccaggttagccatatccaaaagcg
caaaatatttttgtccccgtcaattcaaaatatacaaaaaggaattgcta
gattcaatccgtcatcaaaaatacggcgcatattttaaggcttcaatttt
tcttgcctgagaaaggttagagattgacctctagcccttcgggcttgaaa
ctcaatgctcaGCCGGCCTCTTATTTTGACACTTTGATGATTCCCATGCT
AGACTGTTATCTTACTCTCTTTATCTCCTTACCGTTTGGGCGGCCTTACA
GTCTTTATTTTTCAGTAAACAGTATATATTTTGTTCcgaaaacagaaaat
ttttaaatgtacataaaaGGAAAGAGCTTTATACTTAGTTTTAGATATTT
ATATACCATTGATTttcttggtgataaaagagatgttaataataaaaaaa
ttatcattcattttttccatttcagCTACATGCGAACTTGCCTCAAAAAN
GTCCAGCACTTCAACATACTACCAAGATTCAATTAGATCCTCTTCTTGCA
ATGAAGCAAAAACTCTGTTGAGCCTTGCCTGTccatgaaagaataaaaat
tccatcctctttcttctcattccgcaagttcagctgctttcttcgtttct
tttcatcaagcaccatctcttttcaaaacaccaatttctcttgtcaaaac
aatgttgtttatagtcaacattcgaatttggaaaaattcgaaagcCCTTC
GAAAGAGTTTGctcgagtcaatgcaatgacttcttgaaaaatgagcgcca
tttgaacgcttcttgaacgcttccagcccgcgctgatNGCTGGATTCAAT
CCATCATCAGGgatttttcaaagcattttgaGCTGGGGCCGTTTTTGATA
ATTTAGATTGAGTAGATTGAGTTTCTGAGATGCCTGAAAGGGCATTTACT
CAGCGTGGGTCCAGTGCAAAGCCATGGTGGGGGTTCAAAGAGCGAAGCTC
TCGAAAGGTTTTGAAGGTGTAGATAATATTAGTTATTTTTGCttgcaaac
aacaaaaaagttagatttattattttggattgagtttcaaaatcTCAATC
TTCGATTGAGTGTTTTGGCCGGTATACTGACATAAAAAACTGCTTAGAAA
AATCTCTGATCATAAGAAATTCGCCACAGATTTTAAGACTATTTTTGCTT
GCCTAGGCAAGATTGAAGATTcgcctctagccttcggcttgaaactcaat
ggtatgGGGTGTCAAAAATCACGTGGACGCTTCATTAAAAAGCCATTAAA
AGATGAGTACCCACTCAACTAATTGGAACGTGAGAACTATTTATTGACCA
ACCATGACCAAAAGATACATACAGATGTGTAAATAAATGAAGGAGATTGA
AATAGTGGGAGAATATAAAAGTCGAATTTGTTAATTTCACATTCTTTTAA
ACCAGTGAGCAATTGCGAACACAGAATACTGAGGCAAATTGAACAATTGC
ATTACAGACATAAAAAATGCTGTTCCTTATTGCGTGTATAGCTGCCTATG
TGAATTTTTCGGTTGCTTTGGATAATTCTACGTGTCCGATCGTAAAGAAG
ACCAACGGTTGCAGTATCCCGTTGGATTTATCGTTCCCGTACAAAGAAGT
ATTTAAAGACGTTTGCAACATGCATGATGTCTGCTATGTTTGTGTAAGTT
AGAAACTTTCATTCTTTTCGGAAAAACTGACTGACTCGATTACTCGATAC
GACATGAAACGAAATTGATAGAAAAGTTAAAAGTGTCTATTTATTTCTGA
TATCTGAGTCGAAATCCTGTTACCTGGAAGGTCTCCTAGTGAAAATTCGA
CAATTTGATTGAGGATTCGCACTTTGCAAAATACTTattaattttcatat
ttcataTTAATATTTCATAAACTAAGATCCTGTATCTACAGTGGAGCCTA
CGTAATTCGAACCCGCACgaagaacacaaatttgttaGAGTTAAGGAAAG
TTTATAAGGCaattgttaactgaaaggacCATAAAACTTGAGAGTTGAGA
AGACATTCGGATTATAGAGGTTCGATTCAAAGTGACTACACTGTATAAAA
AAACCTGAAGAATTGGAGCTCGAACCCACGCAAGATTTCAAACCACACGA
TCGGATTTCAATTATAGAATCTCTCTCAGTACCATTATTAAGATTTCCTT
CTTTTGATTCTTATAGGGGAAAACCAACAACTGGACACGAGCCGAATGTG
ATTTAGCCTTTCTTAAAGATCTGAGAAACTACTGCAACACGACAACTCAA
TTCGCTGATAGTCACGTAACATTCCAAAAAGACAAACTTCGAAGTATCCT
ACAAAACGCTGTCAAGAAAGCTGGCCTAACTTCACAAGACGGTATTGACC
TGAAGAAAGAAGCTTTCGAAATCTTTATGATGGTTGTAGCCTGGCGATAC
ATCCAGGATAAGCACAAAGCGTGCCTACATGGAGCAAACCTCTACTACAA
GGCTGTCAATGCATTTGGTGCATNACACATAGCGTGCCTACATGGAGCAA
ACATCTATTACAAGGCTGTCAATGCATTCGGTGCATCAAGTTATGCCAAA
AGACCAAAACCAATCTGTACGCACGCATGCGCAAAGAAGCTTGGTCACCC
TTATTGAGAGTAAAATTTGTAGGAAATATTGTATAGCAGGTTATagtttt
tcattgaaatataaatttttaacaacatcTGAATGACATATAAATGAATT
CCTTCGTAAATACAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071150-exon-scaffold_6-1491911889:225795..226018 | TCONS_00071150-exon-scaffold_6-1491911889:225795..226018 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1510915933:225795..226018 | TCONS_00071150-exon-scaffold_6-1510915933:225795..226018 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1575043694:225795..226018 | TCONS_00071150-exon-scaffold_6-1575043694:225795..226018 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1491911889:233861..234145 | TCONS_00071150-exon-scaffold_6-1491911889:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1510915933:233861..234145 | TCONS_00071150-exon-scaffold_6-1510915933:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1575043694:233861..234145 | TCONS_00071150-exon-scaffold_6-1575043694:233861..234145 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1491911889:234209..234412 | TCONS_00071150-exon-scaffold_6-1491911889:234209..234412 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1510915933:234209..234412 | TCONS_00071150-exon-scaffold_6-1510915933:234209..234412 | Clytia hemisphaerica | exon |
| TCONS_00071150-exon-scaffold_6-1575043694:234209..234412 | TCONS_00071150-exon-scaffold_6-1575043694:234209..234412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:225795..234412 + |
Blast
The following BLAST results are available for this feature:
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