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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071149 ID=TCONS_00071149|Name=TCONS_00071149|organism=Clytia hemisphaerica|type=transcript|length=1030bp
tttgGATTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATACG
AAAATGTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCAC
CATGACAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTA
GTGTGCCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCA
TGCTTAAATCACGATGTTTGCTATCGATGTGGTGTAACATACAGTTGGTC
TCAAAAAGTATGTGACGATGGTTTCAAGCGAATCATGCACGAAAAATGTG
ATGAAAACTTTGTTAACGGTGGTAGCCGTAAAAAGCGATTTCTAAGCtct
ctgaaaagaaaatatcaacgATTGAGagaaaagtatcaaaaattgaagat
ttttaagGAGAAGATCAAAGCTGGTTGGAGAGAAGCAAAGAAAAATGCAA
GTTCTCGAGATGAAGTTGAACGAATCACAAAAGGACTTTGGGACATTATC
AAGATaacaacaaaattttattttgatattgatgattctgatgagTTAGA
TAAATGTAAATTGGCAACCGATATCTTTTACCGATCCGTAGACGTGTTTG
GAGTTTATCGTTACCGGTACACGAACGAAGCGTACTGCCAGGAAAAATGC
GCTCGGCAACTAGGCTATCCTTACGCTAACAATGTATATGTTACGATCTA
GAGTTTGagactcaatggtttgaGCTAACCGTGGCATTTTTAATTAGGCT
TGTAAATGTGAAATATGATATGACAATAATACTCATTATGAAATTGAAAC
TTCACGCTTACATTATTCTAAAACTAAATGTGCCCATAAAAGGTAATACG
AGCCCGATCCTACAGTATTGTACTTAGCTGTGCTAGTTTATTTGACTAGC
TGTATGCTTAAGATTTCATTCATTTCTTCAAATAAcctctttattaaaaa
aataccaACGGAAGTAAAATGTAGAGTATAGAGATGTGTGGACGCTTTCT
TCTTTTGAAgattgcgaaattaaatttctg Run BLAST on NCBI protein sequence of TCONS_00071149-protein >TCONS_00071149-protein ID=TCONS_00071149-protein|Name=TCONS_00071149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MWLLTAFATILVSLVTMTTAQSCGVLKDVNGCSVPFGLEIPFKNTFEPAC
LNHDVCYRCGVTYSWSQKVCDDGFKRIMHEKCDENFVNGGSRKKRFLSSL
KRKYQRLREKYQKLKIFKEKIKAGWREAKKNASSRDEVERITKGLWDIIK
ITTKFYFDIDDSDELDKCKLATDIFYRSVDVFGVYRYRYTNEAYCQEKCA
RQLGYPYANNVYVTI Run BLAST on NCBI transcript from alignment at scaffold_6:225789..228135+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071149 ID=TCONS_00071149|Name=TCONS_00071149|organism=Clytia hemisphaerica|type=transcript|length=2347bp|location=Sequence derived from alignment at scaffold_6:225789..228135+ (Clytia hemisphaerica)
tttgGATTTTATGAATTTGTGGGGAAGCTGGGAGAAAACAACTCTATACG
AAAATGTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCAC
CATGACAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTA
GTGTGCCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCA
TGCTTAAATCACGATGTTTGCTATCGATGTGTAAGTAGGGTTTTAACACT
TATATAGCCTAATCTTTATCGATGTGTAAGTAGGGCTTTAACACTTNCTT
TTGATCTAACGTTTTTAAAAGGTAATCAGGAGCGGGAGGTTACAGATCTC
GTATACAAAGAATCTTATcggtcctttttacgccggcccttattagcGTT
ATCTTTTCGATACTGGCGTAATTAGGGCCGGTGTAACGGCTAAAAAATAG
AACGAGATGgaatttttacaagctcttatttgatttggttggtcgttaac
tagtaataaaacaattttgttactttttctaaagaacgcgtcatttttat
taccttatcggggaaaacttggtcggggaaaagtgacgaaattttggcca
agtgacgaatatttttccccaaCAAAAATTTTCCCGGCCTTAATgtgttt
accaactaccagcaagtgaggaatatttttccccgacaaaaattttcccc
gacacGAAGTTTTCCCCAATTAGTTACTTCAAATGACTTTTATTATTaaa
atatcttataaaaactccatcacTTGCCACTAAATACTCCTGAGGTTATT
ATAGAGTAGCAATACGACATAAAACCCCGTATCTTGATGAAAAAGTGCCT
GTTTTACAAACTTTTAaaggaatttttgttttgtatatTTTAACTTCGAA
GAGAAAAGACAGTGAAAAGAAACAATACAAACAACCCTTGATGTCTTCCC
ATCCCTCTCAAATcaccatacacgtttttttttataagaacgtcaaaaat
tttcgaagccttcggatgttcttagttttttggatttgaagcctaaaaat
gttcttaaaatgttcttattttcagcattttttgagcattttgatgtaat
ttcttaagaaattgcatgtttttaagtctccaaggccttagaatgttctt
agaatatgttcttaaatttttgggcctcgaagccttatgttcttatatag
tttgttcttataaaaaaaaaacgtgtacaactGATTCTATTTATTCAACG
TTTCTTCACAGGGTGTAACATACAGTTGGTCTCAAAAAGTATGTGACGAT
GGTTTCAAGCGAATCATGCACGAAAAATGTGATGAAAACTTTGTTAACGG
TGGTAGCCGTAAAAAGCGATTTCTAAGCtctctgaaaagaaaatatcaac
gATTGAGagaaaagtatcaaaaattgaagatttttaagGAGAAGATCAAA
GCTGGTTGGAGAGAAGCAAAGAAAAATGCAAGTTCTCGAGATGAAGTTGA
ACGAATCACAAAAGGACTTTGGGACATTATCAAGATaacaacaaaatttt
attttgatattgatgattctgatgagTTAGATAAATGTAAATTGGCAACC
GATATCTTTTACCGATCCGTAGACGTGTTTGGAGTTTATCGTTACCGGTA
CACGAACGAAGCGTACTGCCAGGAAAAATGCGCTCGGCAACTAGGCTATC
CTTACGCTAACAATGTATATGTTACGATCTAGAGTTTGagacattgagtt
tcaagcctgaagggctagatgcgagactcctggatagaaaatgaaaccac
ttatttcccatccagaacgcccgctcGCTCgcagtttttacacaaacgcc
ggattgaaactaaaatctatcgctagatttcaaaaatgtagtcctccaaa
acaaaggaaccgctagatacaatccgtcatCATGATTACAGCGTTCTATG
cgtgttttggatgggaaataggtGGCTTCAATTtccttgcctgagaaggg
ttaaagttttgcccttcgggcttgaaactcaatggtttgaGCTAACCGTG
GCATTTTTAATTAGGCTTGTAAATGTGAAATATGATATGACAATAATACT
CATTATGAAATTGAAACTTCACGCTTACATTATTCTAAAACTAAATGTGC
CCATAAAAGGTAATACGAGCCCGATCCTACAGTATTGTACTTAGCTGTGC
TAGTTTATTTGACTAGCTGTATGCTTAAGATTTCATTCATTTCTTCAAAT
AAcctctttattaaaaaaataccaACGGAAGTAAAATGTAGAGTATAGAG
ATGTGTGGACGCTTTCTTCTTTTGAAgattgcgaaattaaatttctg Coding sequence (CDS) from alignment at scaffold_6:225789..228135+ >TCONS_00071149 ID=TCONS_00071149|Name=TCONS_00071149|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_6:225789..228135+ (Clytia hemisphaerica)
ATGTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCACCAT
GACAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTAGTG
TGCCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCATGC
TTAAATCACGATGTTTGCTATCGATGTGGTGTAACATACAGTTGGTCTCA
AAAAGTATGTGACGATGGTTTCAAGCGAATCATGCACGAAAAATGTGATG
AAAACTTTGTTAACGGTGGTAGCCGTAAAAAGCGATTTCTAAGCtctctg
aaaagaaaatatcaacgATTGAGagaaaagtatcaaaaattgaagatttt
taagGAGAAGATCAAAGCTGGTTGGAGAGAAGCAAAGAAAAATGCAAGTT
CTCGAGATGAAGTTGAACGAATCACAAAAGGACTTTGGGACATTATCAAG
ATaacaacaaaattttattttgatattgatgattctgatgagTTAGATAA
ATGTAAATTGGCAACCGATATCTTTTACCGATCCGTAGACGTGTTTGGAG
TTTATCGTTACCGGTACACGAACGAAGCGTACTGCCAGGAAAAATGCGCT
CGGCAACTAGGCTATCCTTACGCTAACAATGTATATGTTACGATCTAGAT
GTGGCTGCTCACAGCTTTCGCTACCATTTTGGTTTCTTTGGTCACCATGA
CAACCGCTCAATCGTGTGGAGTCTTGAAAGATGTGAACGGGTGTAGTGTG
CCATTCGGTTTAGAAATACCGTTTAAAAATACGTTCGAACCAGCATGCTT
AAATCACGATGTTTGCTATCGATGTGGTGTAACATACAGTTGGTCTCAAA
AAGTATGTGACGATGGTTTCAAGCGAATCATGCACGAAAAATGTGATGAA
AACTTTGTTAACGGTGGTAGCCGTAAAAAGCGATTTCTAAGCtctctgaa
aagaaaatatcaacgATTGAGagaaaagtatcaaaaattgaagattttta
agGAGAAGATCAAAGCTGGTTGGAGAGAAGCAAAGAAAAATGCAAGTTCT
CGAGATGAAGTTGAACGAATCACAAAAGGACTTTGGGACATTATCAAGAT
aacaacaaaattttattttgatattgatgattctgatgagTTAGATAAAT
GTAAATTGGCAACCGATATCTTTTACCGATCCGTAGACGTGTTTGGAGTT
TATCGTTACCGGTACACGAACGAAGCGTACTGCCAGGAAAAATGCGCTCG
GCAACTAGGCTATCCTTACGCTAACAATGTATATGTTACGATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071149-exon-scaffold_6-1491911889:225789..226018 | TCONS_00071149-exon-scaffold_6-1491911889:225789..226018 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1510915933:225789..226018 | TCONS_00071149-exon-scaffold_6-1510915933:225789..226018 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1575043694:225789..226018 | TCONS_00071149-exon-scaffold_6-1575043694:225789..226018 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1491911889:227050..227530 | TCONS_00071149-exon-scaffold_6-1491911889:227050..227530 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1510915933:227050..227530 | TCONS_00071149-exon-scaffold_6-1510915933:227050..227530 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1575043694:227050..227530 | TCONS_00071149-exon-scaffold_6-1575043694:227050..227530 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1491911889:227817..228135 | TCONS_00071149-exon-scaffold_6-1491911889:227817..228135 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1510915933:227817..228135 | TCONS_00071149-exon-scaffold_6-1510915933:227817..228135 | Clytia hemisphaerica | exon |
| TCONS_00071149-exon-scaffold_6-1575043694:227817..228135 | TCONS_00071149-exon-scaffold_6-1575043694:227817..228135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:225789..228135 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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