TCONS_00071128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071128
Unique NameTCONS_00071128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071128 ID=TCONS_00071128|Name=TCONS_00071128|organism=Clytia hemisphaerica|type=transcript|length=364bp
gccaataagaaCTGACGTAAAGGGAGCCGATAAGGGTAGAAAGGAGACGA
TCACAGCGTTATTGCTCGGACTTTAATCCTCAAGCACAAAAAGGAAACTT
AGTCGAAGGCAATCCGATTCAATCAAaaccaatcgaactcaatcgaaacc
aatcaaACTCAATTGAATTGATCGATCAAATCAATCGAGCTCGATCGAAG
TGAATCGAAACCAATCAACcgagaaaaaaatgtcaatattcgattgggtt
cgattgtccgatcaatcacttcgattgagttCAATTGATTCGACCAATCA
GTTCGATTGGTTTTGGTtgagttcgattggtttgacaatcgaaattttcg
attgacatcccctg
Run BLAST on NCBI

transcript from alignment at scaffold_58:1530198..1530561

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071128 ID=TCONS_00071128|Name=TCONS_00071128|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at scaffold_58:1530198..1530561 (Clytia hemisphaerica)
caggggatgtcaatcgaaaatttcgattgtcaaaccaatcgaactcaACC
AAAACCAATCGAACTGATTGGTCGAATCAATTGaactcaatcgaagtgat
tgatcggacaatcgaacccaatcgaatattgacatttttttctcgGTTGA
TTGGTTTCGATTCACTTCGATCGAGCTCGATTGATTTGATCGATCAATTC
AATTGAGTttgattggtttcgattgagttcgattggttTTGATTGAATCG
GATTGCCTTCGACTAAGTTTCCTTTTTGTGCTTGAGGATTAAAGTCCGAG
CAATAACGCTGTGATCGTCTCCTTTCTACCCTTATCGGCTCCCTTTACGT
CAGttcttattggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044210XLOC_044210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071128-exon-scaffold_58-1491911889:1530198..1530561TCONS_00071128-exon-scaffold_58-1491911889:1530198..1530561Clytia hemisphaericaexon
TCONS_00071128-exon-scaffold_58-1510915933:1530198..1530561TCONS_00071128-exon-scaffold_58-1510915933:1530198..1530561Clytia hemisphaericaexon
TCONS_00071128-exon-scaffold_58-1575043694:1530198..1530561TCONS_00071128-exon-scaffold_58-1575043694:1530198..1530561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1530198..1530561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.30923	0.774497	0.989161	1.90299	0.308669	0.915498	0	0.550989	1.9955	1.67239	2.19417	1.81069	0.765328	0.632355	0	0.278957	0	0.98743	0.243314	0.661478	0.963117	1.49885	0.120704	0.477191	0.245748	1.09662	0.376144	1.3456	1.85238	0.895308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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