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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071127 ID=TCONS_00071127|Name=TCONS_00071127|organism=Clytia hemisphaerica|type=transcript|length=1483bp
ATTACTGTGTAAAATTATTGTCATCAGTTGTAGAATTCTTCAGAGGAATC
TTGGTAATCCTCACGTGAATCTTGAGTATATGGTAGATACTTAGCATCTT
TCTCCACAGCCATTTCTTCCCGAACTCGTTGAATTCGACGGTTGTAATTT
GGGCTACGTTGGCTCATCCAATCTTGTTGATCCATTGCTTCTCCATCGTT
TGATTCCATTTCATCTCCAGATGGCTTCAATATTTTCAATCCTTCCCAAG
CTGGAATAAGCCCAAGAACCACACCATCCCAGTaattttcgattgttttc
tttAGCTTATACACATAGTCGCTCTCGTGCCCAGCAATTTTTTAGCAACC
CATTCTCCAGATTTCTTCCAATCATTTAGTTTAGTGTTGAACCAAATATA
TGAGGAGCCAAGATTTTCTCTCCCATCCCATCTGATCGATACTTTCTTCA
AACACGTGTGGCTTGATAGTTCAGCACGATCATAAACACAAGTGCATTTC
ACTTCCTTAGCTGTATTTTTACTTGGCCATCCTTCCCAGATATCAAAAGT
TGTGCATTTGAAGGTATCATGGCAATTGTTACCATCCGTATGCATTCGTC
GGATCATAGCGACAGCATTTTGAACGTATTTCTTTGCATATTCAATCTCA
GCATTCAAATCTTCTGCGTATCTTTGAAACTCTCTTCTTTTGTAGGGATT
ATTTGCATAGGTAGCTGTGATGGCTGAGAGACTGCCTAGAGCCATAGCAA
CCCAATCACGGAAGGTGATCAAACTAGCTTCAATGCGTTTGATATCATAA
TCGGACAATTCTTTGTTGTTGATTATATTGTCACCAAACATAGCGAATTT
GGGTCGCGATGCAATGATATCCTTAGCGGCATCTTCTTGGCATTCGTCCA
CTTTTGCTTTCCTGACTTCTCTTACACAATTACCCCATAGTTTAAACAAT
GACTTGTACTCACGTtcaatgagatttttttccaaattgattgttttttg
aTCAACATATCCTTGCATTTCTTCTAAACGGTCATTCATCTGGTTGGTTA
GTTTAGCGATGGCTTCGTTAGCTTTATCCAAAATATCTTGTGGTGATGGA
TCAACAAAAGCTTGAACAATGCCTAATCCAATGCCAAATAATCCAAGAGC
ATTACCTAGTTTAGGGGCAATGGATGCCAGCTTCTTCATTTTTCCCAAGC
CCTTTCATTAGTAATTCATTCCCTTGTGCAGCTGCAACGATTTTCCCCAT
GTTTGATTGAAGTCCTCCGAACATTGCTGCTTCCATTTTAGCAGTTTCTG
GTGTGATCTTTTGAGCGATGACTTTGTTTCCTCCTGGGGTGTATCCTTTA
AAATAGCATAAACCACTTGAGTCATACTTTGCATAAATCCATCCGACTCT
GTTACTCGTTGGTTTATACATCGGTATTAACTGTTGTTCACTTTGATGCG
GTAGTACCAATAACACCAATAGCAAAAACATCT Run BLAST on NCBI protein sequence of TCONS_00071127-protein >TCONS_00071127-protein ID=TCONS_00071127-protein|Name=TCONS_00071127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MKKLASIAPKLGNALGLFGIGLGIVQAFVDPSPQDILDKANEAIAKLTNQ
MNDRLEEMQGYVDQKTINLEKNLIEREYKSLFKLWGNCVREVRKAKVDEC
QEDAAKDIIASRPKFAMFGDNIINNKELSDYDIKRIEASLITFRDWVAMA
LGSLSAITATYANNPYKRREFQRYAEDLNAEIEYAKKYVQNAVAMIRRMH
TDGNNCHDTFKCTTFDIWEGWPSKNTAKEVKCTCVYDRAELSSHTCLKKV
SIRWDGRENLGSSYIWFNTKLNDWKKSGEWVAKKLLGTRATMCIS Run BLAST on NCBI transcript from alignment at scaffold_58:1526129..1527611 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071127 ID=TCONS_00071127|Name=TCONS_00071127|organism=Clytia hemisphaerica|type=transcript|length=1483bp|location=Sequence derived from alignment at scaffold_58:1526129..1527611 (Clytia hemisphaerica)
AGATGTTTTTGCTATTGGTGTTATTGGTACTACCGCATCAAAGTGAACAA
CAGTTAATACCGATGTATAAACCAACGAGTAACAGAGTCGGATGGATTTA
TGCAAAGTATGACTCAAGTGGTTTATGCTATTTTAAAGGATACACCCCAG
GAGGAAACAAAGTCATCGCTCAAAAGATCACACCAGAAACTGCTAAAATG
GAAGCAGCAATGTTCGGAGGACTTCAATCAAACATGGGGAAAATCGTTGC
AGCTGCACAAGGGAATGAATTACTAATGAAAGGGCTTGGGAAAAATGAAG
AAGCTGGCATCCATTGCCCCTAAACTAGGTAATGCTCTTGGATTATTTGG
CATTGGATTAGGCATTGTTCAAGCTTTTGTTGATCCATCACCACAAGATA
TTTTGGATAAAGCTAACGAAGCCATCGCTAAACTAACCAACCAGATGAAT
GACCGTTTAGAAGAAATGCAAGGATATGTTGAtcaaaaaacaatcaattt
ggaaaaaaatctcattgaACGTGAGTACAAGTCATTGTTTAAACTATGGG
GTAATTGTGTAAGAGAAGTCAGGAAAGCAAAAGTGGACGAATGCCAAGAA
GATGCCGCTAAGGATATCATTGCATCGCGACCCAAATTCGCTATGTTTGG
TGACAATATAATCAACAACAAAGAATTGTCCGATTATGATATCAAACGCA
TTGAAGCTAGTTTGATCACCTTCCGTGATTGGGTTGCTATGGCTCTAGGC
AGTCTCTCAGCCATCACAGCTACCTATGCAAATAATCCCTACAAAAGAAG
AGAGTTTCAAAGATACGCAGAAGATTTGAATGCTGAGATTGAATATGCAA
AGAAATACGTTCAAAATGCTGTCGCTATGATCCGACGAATGCATACGGAT
GGTAACAATTGCCATGATACCTTCAAATGCACAACTTTTGATATCTGGGA
AGGATGGCCAAGTAAAAATACAGCTAAGGAAGTGAAATGCACTTGTGTTT
ATGATCGTGCTGAACTATCAAGCCACACGTGTTTGAAGAAAGTATCGATC
AGATGGGATGGGAGAGAAAATCTTGGCTCCTCATATATTTGGTTCAACAC
TAAACTAAATGATTGGAAGAAATCTGGAGAATGGGTTGCTAAAAAATTGC
TGGGCACGAGAGCGACTATGTGTATAAGCTaaagaaaacaatcgaaaatt
ACTGGGATGGTGTGGTTCTTGGGCTTATTCCAGCTTGGGAAGGATTGAAA
ATATTGAAGCCATCTGGAGATGAAATGGAATCAAACGATGGAGAAGCAAT
GGATCAACAAGATTGGATGAGCCAACGTAGCCCAAATTACAACCGTCGAA
TTCAACGAGTTCGGGAAGAAATGGCTGTGGAGAAAGATGCTAAGTATCTA
CCATATACTCAAGATTCACGTGAGGATTACCAAGATTCCTCTGAAGAATT
CTACAACTGATGACAATAATTTTACACAGTAAT Coding sequence (CDS) from alignment at scaffold_58:1526129..1527611 >TCONS_00071127 ID=TCONS_00071127|Name=TCONS_00071127|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_58:1526129..1527611 (Clytia hemisphaerica)
ATGAAGAAGCTGGCATCCATTGCCCCTAAACTAGGTAATGCTCTTGGATT
ATTTGGCATTGGATTAGGCATTGTTCAAGCTTTTGTTGATCCATCACCAC
AAGATATTTTGGATAAAGCTAACGAAGCCATCGCTAAACTAACCAACCAG
ATGAATGACCGTTTAGAAGAAATGCAAGGATATGTTGAtcaaaaaacaat
caatttggaaaaaaatctcattgaACGTGAGTACAAGTCATTGTTTAAAC
TATGGGGTAATTGTGTAAGAGAAGTCAGGAAAGCAAAAGTGGACGAATGC
CAAGAAGATGCCGCTAAGGATATCATTGCATCGCGACCCAAATTCGCTAT
GTTTGGTGACAATATAATCAACAACAAAGAATTGTCCGATTATGATATCA
AACGCATTGAAGCTAGTTTGATCACCTTCCGTGATTGGGTTGCTATGGCT
CTAGGCAGTCTCTCAGCCATCACAGCTACCTATGCAAATAATCCCTACAA
AAGAAGAGAGTTTCAAAGATACGCAGAAGATTTGAATGCTGAGATTGAAT
ATGCAAAGAAATACGTTCAAAATGCTGTCGCTATGATCCGACGAATGCAT
ACGGATGGTAACAATTGCCATGATACCTTCAAATGCACAACTTTTGATAT
CTGGGAAGGATGGCCAAGTAAAAATACAGCTAAGGAAGTGAAATGCACTT
GTGTTTATGATCGTGCTGAACTATCAAGCCACACGTGTTTGAAGAAAGTA
TCGATCAGATGGGATGGGAGAGAAAATCTTGGCTCCTCATATATTTGGTT
CAACACTAAACTAAATGATTGGAAGAAATCTGGAGAATGGGTTGCTAAAA
AATTGCTGGGCACGAGAGCGACTATGTGTATAAGCTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071127-exon-scaffold_58-1491911889:1526129..1527611 | TCONS_00071127-exon-scaffold_58-1491911889:1526129..1527611 | Clytia hemisphaerica | exon |
| TCONS_00071127-exon-scaffold_58-1510915933:1526129..1527611 | TCONS_00071127-exon-scaffold_58-1510915933:1526129..1527611 | Clytia hemisphaerica | exon |
| TCONS_00071127-exon-scaffold_58-1575043694:1526129..1527611 | TCONS_00071127-exon-scaffold_58-1575043694:1526129..1527611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1526129..1527611 . |
Blast
The following BLAST results are available for this feature:
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