TCONS_00071121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071121
Unique NameTCONS_00071121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071121 ID=TCONS_00071121|Name=TCONS_00071121|organism=Clytia hemisphaerica|type=transcript|length=297bp
CCCCCCCTCCAGCGGGCCTTCAATTCACGAAATCACGCAAATGTGtttcc
caaattcacgcattgacgcattttttaattttcacgcaggtgaaaaagcc
cattcacgcattcacgcaaaccgttGGGGAGCCTATAATTGATTGATCGT
CAAAGGGTTCCCCTTACTCGAAATCTTGACAGATCCTCTCTTAAGACACT
ATGGAACAGCAAAGTAACCAGGGAATCTCCCTTTAAAAACAATTGATAGA
TACTCGTTATATTGGTAGCTGCTGCGCATACCATGAGCAAGTTTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:1349756..1350052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071121 ID=TCONS_00071121|Name=TCONS_00071121|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at scaffold_58:1349756..1350052 (Clytia hemisphaerica)
GTAAAACTTGCTCATGGTATGCGCAGCAGCTACCAATATAACGAGTATCT
ATCAATTGTTTTTAAAGGGAGATTCCCTGGTTACTTTGCTGTTCCATAGT
GTCTTAAGAGAGGATCTGTCAAGATTTCGAGTAAGGGGAACCCTTTGACG
ATCAATCAATTATAGGCTCCCCaacggtttgcgtgaatgcgtgaatgggc
tttttcacctgcgtgaaaattaaaaaatgcgtcaatgcgtgaatttggga
aaCACATTTGCGTGATTTCGTGAATTGAAGGCCCGCTGGAGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044203XLOC_044203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071121-exon-scaffold_58-1491911889:1349756..1350052TCONS_00071121-exon-scaffold_58-1491911889:1349756..1350052Clytia hemisphaericaexon
TCONS_00071121-exon-scaffold_58-1510915933:1349756..1350052TCONS_00071121-exon-scaffold_58-1510915933:1349756..1350052Clytia hemisphaericaexon
TCONS_00071121-exon-scaffold_58-1575043694:1349756..1350052TCONS_00071121-exon-scaffold_58-1575043694:1349756..1350052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1349756..1350052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.784762	0.455592	0.445726	0	1.28638	1.55196	0	0.678151	0.839999	0.407662	0.840619	1.60565	0	0.228483	0.490395	2.11444	0	0.427736	0.466384	1.16712	0	0	1.25832	0.864029	0	0	0	0.446607	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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