TCONS_00071120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071120
Unique NameTCONS_00071120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071120 ID=TCONS_00071120|Name=TCONS_00071120|organism=Clytia hemisphaerica|type=transcript|length=283bp
tattttcttataaatcaATAGTTTAATGGTATTATTTCTTTTCGGGTATA
TGTTTCTCCTTTTTTTGCCTTTTCACACCATTCTACAACATGTCAAAACA
CAACAACCAGTTAAAgcaagattttgtttttttattttccagttgTTTAC
AAATTTGGATCAGACTTTCAAGTCTAGATCTGTATATACTACAATGGCAA
AACTAGTTGCTGTTTGTAGGGATGAAGAGTTCCCTTTTGAAAGAAGGCAA
ATACCTTTAATGATTGAAGAAACTCTTACGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_58:1329957..1330239

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071120 ID=TCONS_00071120|Name=TCONS_00071120|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_58:1329957..1330239 (Clytia hemisphaerica)
TACCGTAAGAGTTTCTTCAATCATTAAAGGTATTTGCCTTCTTTCAAAAG
GGAACTCTTCATCCCTACAAACAGCAACTAGTTTTGCCATTGTAGTATAT
ACAGATCTAGACTTGAAAGTCTGATCCAAATTTGTAAAcaactggaaaat
aaaaaaacaaaatcttgcTTTAACTGGTTGTTGTGTTTTGACATGTTGTA
GAATGGTGTGAAAAGGCAAAAAAAGGAGAAACATATACCCGAAAAGAAAT
AATACCATTAAACTATtgatttataagaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044202XLOC_044202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071120-exon-scaffold_58-1491911889:1329957..1330239TCONS_00071120-exon-scaffold_58-1491911889:1329957..1330239Clytia hemisphaericaexon
TCONS_00071120-exon-scaffold_58-1510915933:1329957..1330239TCONS_00071120-exon-scaffold_58-1510915933:1329957..1330239Clytia hemisphaericaexon
TCONS_00071120-exon-scaffold_58-1575043694:1329957..1330239TCONS_00071120-exon-scaffold_58-1575043694:1329957..1330239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1329957..1330239 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.80462	1.85505	0.538473	1.05362	8.9788	7.60197	1.22286	6.29655	0.40076	1.48922	0	1.26693	2.53033	2.2993	0.540097	0	0	0	0.50555	0	0.919631	3.36423	2.18115	2.47873	11.744	19.5953	0.652111	2.7838	0.527854	2.1512
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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