TCONS_00071117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071117
Unique NameTCONS_00071117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071117 ID=TCONS_00071117|Name=TCONS_00071117|organism=Clytia hemisphaerica|type=transcript|length=373bp
ATGACATGGTTCTGTCCAGTGTGTACGGAACTTCGCAAAATGCCCATTCA
TCCTTTCCATTGGGAGAATCCGTTCGACCACCATATGGGACCTCCTCAAT
GCAAAACCCACGAAAGCAAAAAGAAGTTAAAAGTCAACACGTACCCGACC
ATGTCGGAGATCTGCTTCATCAAGAACACTCACATCTTAGGAGTCAAAGA
TGGTAAATTCAAGATTATGCCGCTCAACATTACTGGATGCATTGACATGT
ACGATTTCGTGGTGAAAGTGTTTAAGATGGGACGAATGGAATGGCCTCAC
ATGGTTACACTGGACGAATGGTAAATAATTCGTTCCTACACGTTTCTACA
CGAGGCTTCGTGATTATGCCTTG
Run BLAST on NCBI

protein sequence of TCONS_00071117-protein

>TCONS_00071117-protein ID=TCONS_00071117-protein|Name=TCONS_00071117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MTWFCPVCTELRKMPIHPFHWENPFDHHMGPPQCKTHESKKKLKVNTYPT
MSEICFIKNTHILGVKDGKFKIMPLNITGCIDMYDFVVKVFKMGRMEWPH
MVTLDEW
Run BLAST on NCBI

transcript from alignment at scaffold_58:1305789..1306161

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071117 ID=TCONS_00071117|Name=TCONS_00071117|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_58:1305789..1306161 (Clytia hemisphaerica)
CAAGGCATAATCACGAAGCCTCGTGTAGAAACGTGTAGGAACGAATTATT
TACCATTCGTCCAGTGTAACCATGTGAGGCCATTCCATTCGTCCCATCTT
AAACACTTTCACCACGAAATCGTACATGTCAATGCATCCAGTAATGTTGA
GCGGCATAATCTTGAATTTACCATCTTTGACTCCTAAGATGTGAGTGTTC
TTGATGAAGCAGATCTCCGACATGGTCGGGTACGTGTTGACTTTTAACTT
CTTTTTGCTTTCGTGGGTTTTGCATTGAGGAGGTCCCATATGGTGGTCGA
ACGGATTCTCCCAATGGAAAGGATGAATGGGCATTTTGCGAAGTTCCGTA
CACACTGGACAGAACCATGTCAT

Coding sequence (CDS) from alignment at scaffold_58:1305789..1306161

>TCONS_00071117 ID=TCONS_00071117|Name=TCONS_00071117|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_58:1305789..1306161 (Clytia hemisphaerica)
TTACCATTCGTCCAGTGTAACCATGTGAGGCCATTCCATTCGTCCCATCT
TAAACACTTTCACCACGAAATCGTACATGTCAATGCATCCAGTAATGTTG
AGCGGCATAATCTTGAATTTACCATCTTTGACTCCTAAGATGTGAGTGTT
CTTGATGAAGCAGATCTCCGACATGGTCGGGTACGTGTTGACTTTTAACT
TCTTTTTGCTTTCGTGGGTTTTGCATTGAGGAGGTCCCATATGGTGGTCG
AACGGATTCTCCCAATGGAAAGGATGAATGGGCATTTTGCGAAGTTCCGT
ACACACTGGACAGAACCATGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044199XLOC_044199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071117-exon-scaffold_58-1491911889:1305789..1306161TCONS_00071117-exon-scaffold_58-1491911889:1305789..1306161Clytia hemisphaericaexon
TCONS_00071117-exon-scaffold_58-1510915933:1305789..1306161TCONS_00071117-exon-scaffold_58-1510915933:1305789..1306161Clytia hemisphaericaexon
TCONS_00071117-exon-scaffold_58-1575043694:1305789..1306161TCONS_00071117-exon-scaffold_58-1575043694:1305789..1306161Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071117-proteinTCONS_00071117-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1305789..1306161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29797	1.05477	0.979749	2.1567	0.58346	0.461058	2.22499	0.520751	2.55213	2.93543	1.97252	5.18663	9.4956	14.4931	3.80798	3.69107	6.98304	7.32385	5.28911	1.9251	5.85642	7.65149	1.73626	0.902007	0	0	2.0764	1.89942	7.92353	8.31745
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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