TCONS_00071116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071116
Unique NameTCONS_00071116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071116 ID=TCONS_00071116|Name=TCONS_00071116|organism=Clytia hemisphaerica|type=transcript|length=347bp
CGAGGACGATATACGTTTCACAAAACCAAAACAGTACAGATACGGCAGAC
TGTGGCTTTTTCAACAAACCGTGCAACAGTTTGCGTCAAGCCATCAAAAT
CTCCGATCCATCAGACACCATTTTAATGGATTCTAATTATGTTTACCACC
AGAATAAAACAATATCCATCCCGCATTCTCTGATTATCTCAAGTTATTCT
GCTGGCCCTGCAATGAAGAGCGTTGATGACAAAGCTATTTTGGATTTCCT
CTTCCACTTTGAAGAAGGAGACAGAACATTTTTCTCCATCAAACAAAAAC
TCATTCTCACAAACATTAAATTGATTGTTAACCCAACAAGCGACCGT
Run BLAST on NCBI

protein sequence of TCONS_00071116-protein

>TCONS_00071116-protein ID=TCONS_00071116-protein|Name=TCONS_00071116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
RTIYVSQNQNSTDTADCGFFNKPCNSLRQAIKISDPSDTILMDSNYVYHQ
NKTISIPHSLIISSYSAGPAMKSVDDKAILDFLFHFEEGDRTFFSIKQKL
ILTNIKLIVNPTSDR
Run BLAST on NCBI

transcript from alignment at scaffold_58:1285571..1285917

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071116 ID=TCONS_00071116|Name=TCONS_00071116|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_58:1285571..1285917 (Clytia hemisphaerica)
ACGGTCGCTTGTTGGGTTAACAATCAATTTAATGTTTGTGAGAATGAGTT
TTTGTTTGATGGAGAAAAATGTTCTGTCTCCTTCTTCAAAGTGGAAGAGG
AAATCCAAAATAGCTTTGTCATCAACGCTCTTCATTGCAGGGCCAGCAGA
ATAACTTGAGATAATCAGAGAATGCGGGATGGATATTGTTTTATTCTGGT
GGTAAACATAATTAGAATCCATTAAAATGGTGTCTGATGGATCGGAGATT
TTGATGGCTTGACGCAAACTGTTGCACGGTTTGTTGAAAAAGCCACAGTC
TGCCGTATCTGTACTGTTTTGGTTTTGTGAAACGTATATCGTCCTCG

Coding sequence (CDS) from alignment at scaffold_58:1285571..1285917

>TCONS_00071116 ID=TCONS_00071116|Name=TCONS_00071116|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_58:1285571..1285917 (Clytia hemisphaerica)
ACGGTCGCTTGTTGGGTTAACAATCAATTTAATGTTTGTGAGAATGAGTT
TTTGTTTGATGGAGAAAAATGTTCTGTCTCCTTCTTCAAAGTGGAAGAGG
AAATCCAAAATAGCTTTGTCATCAACGCTCTTCATTGCAGGGCCAGCAGA
ATAACTTGAGATAATCAGAGAATGCGGGATGGATATTGTTTTATTCTGGT
GGTAAACATAATTAGAATCCATTAAAATGGTGTCTGATGGATCGGAGATT
TTGATGGCTTGACGCAAACTGTTGCACGGTTTGTTGAAAAAGCCACAGTC
TGCCGTATCTGTACTGTTTTGGTTTTGTGAAACGTATATCGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044198XLOC_044198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071116-exon-scaffold_58-1491911889:1285571..1285917TCONS_00071116-exon-scaffold_58-1491911889:1285571..1285917Clytia hemisphaericaexon
TCONS_00071116-exon-scaffold_58-1510915933:1285571..1285917TCONS_00071116-exon-scaffold_58-1510915933:1285571..1285917Clytia hemisphaericaexon
TCONS_00071116-exon-scaffold_58-1575043694:1285571..1285917TCONS_00071116-exon-scaffold_58-1575043694:1285571..1285917Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071116-proteinTCONS_00071116-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1285571..1285917 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.330523	0.618863	0.21664	1.07338	2.60461	0.684867	4.44545	3.90639	3.50355	6.10974	2.5089	1.38468	3.82601	3.4317	0.745692	1.81861	0.294768	1.60792	3.86428	4.92683	0	0	0.285344	0.87216
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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