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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071115 ID=TCONS_00071115|Name=TCONS_00071115|organism=Clytia hemisphaerica|type=transcript|length=1067bp
ATGCAGATAATATTTTCAATAGCTCGTTTCTTGATCAATCATATTCAGAT
CCTCACCCGACTCAACCGAAATTTTTTTCCACGAAAGTTGTACATTGTAT
TTTTCGGGACAGTTCTGTTTCGTTTCAGAATAGTAAACTgtatcaagtat
caaaaacACATTTTGAACACTCTAAGGTTGCCATTGGTACTTATCAAGAC
ACAATCATTAACATAGAAAGCTGTTCATTCAAGGGATCGGCGTTCGATAC
ACCACCTCCAAGCCAGCTGGAACTATATTCAATAAGGTCAAATAACGAAG
GGAAGGCATCGATAAATAATTGCACTTTTGAAAACTCGAACTCCGGTTCC
ATTATCTGCAACGGGTTTAGTATCACCATCACAAATACAACATTTTTGAA
CAATTCGCTAATCGACGATCAAGACTTCGCGACCACCATGGCAGCTGCAT
TAACTATAACGTCATCCATGAGTGTTGACCTTAGTAATTGTACCTTCTCA
GAAAACAGAGCTCCCGCAATTCTCTTCAGCTCAATATACATCGTAATGTC
AAACAGCATCGATATCTTTTTACGCTTATCTGAGGTGATGGTGGTGTCGT
CTAGTGACCTCAATAGGGAAAGTAACATTTTACTTATCAAAGCAAATAGA
CAGGCCGTATTAGAAGATATAGGTATCTTAAACTCGAGCGTATCGTGTTT
ACCAAACTATAACATACATGGCATTATGAGGAAATATATAGGGAACAACC
GATTTTTCGTACGGTTGTCATGCGAAGAATGCGAGGGGACGAAATACAAT
GTCAAAAACAAATCACACGTCTCTTGGGATACTTCTGGTGATGCTACAAT
TCACAATGTGACATGCTATCCTTGCCCTTACCAAGCTTCATGCGTAAATG
GTATTAAAAGTAAAGGTAATTATTGGGGATATGCTGATCATTTAGGATAT
GTGGCTTTCGTGCAATGCCCTCCTTTCTATTGCTGTCCTACTTTAAAGAA
ATGTGCTTCTTATAACAGCTGTTCGAACAATCGACAAGGAAGACTTTGTG
GTGAATGTAAATACAAT Run BLAST on NCBI protein sequence of TCONS_00071115-protein >TCONS_00071115-protein ID=TCONS_00071115-protein|Name=TCONS_00071115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
ADNIFNSSFLDQSYSDPHPTQPKFFSTKVVHCIFRDSSVSFQNSKLYQVS
KTHFEHSKVAIGTYQDTIINIESCSFKGSAFDTPPPSQLELYSIRSNNEG
KASINNCTFENSNSGSIICNGFSITITNTTFLNNSLIDDQDFATTMAAAL
TITSSMSVDLSNCTFSENRAPAILFSSIYIVMSNSIDIFLRLSEVMVVSS
SDLNRESNILLIKANRQAVLEDIGILNSSVSCLPNYNIHGIMRKYIGNNR
FFVRLSCEECEGTKYNVKNKSHVSWDTSGDATIHNVTCYPCPYQASCVNG
IKSKGNYWGYADHLGYVAFVQCPPFYCCPTLKKCASYNSCSNNRQGRLCG
ECKYN Run BLAST on NCBI transcript from alignment at scaffold_58:1284134..1285200 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071115 ID=TCONS_00071115|Name=TCONS_00071115|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at scaffold_58:1284134..1285200 (Clytia hemisphaerica)
ATTGTATTTACATTCACCACAAAGTCTTCCTTGTCGATTGTTCGAACAGC
TGTTATAAGAAGCACATTTCTTTAAAGTAGGACAGCAATAGAAAGGAGGG
CATTGCACGAAAGCCACATATCCTAAATGATCAGCATATCCCCAATAATT
ACCTTTACTTTTAATACCATTTACGCATGAAGCTTGGTAAGGGCAAGGAT
AGCATGTCACATTGTGAATTGTAGCATCACCAGAAGTATCCCAAGAGACG
TGTGATTTGTTTTTGACATTGTATTTCGTCCCCTCGCATTCTTCGCATGA
CAACCGTACGAAAAATCGGTTGTTCCCTATATATTTCCTCATAATGCCAT
GTATGTTATAGTTTGGTAAACACGATACGCTCGAGTTTAAGATACCTATA
TCTTCTAATACGGCCTGTCTATTTGCTTTGATAAGTAAAATGTTACTTTC
CCTATTGAGGTCACTAGACGACACCACCATCACCTCAGATAAGCGTAAAA
AGATATCGATGCTGTTTGACATTACGATGTATATTGAGCTGAAGAGAATT
GCGGGAGCTCTGTTTTCTGAGAAGGTACAATTACTAAGGTCAACACTCAT
GGATGACGTTATAGTTAATGCAGCTGCCATGGTGGTCGCGAAGTCTTGAT
CGTCGATTAGCGAATTGTTCAAAAATGTTGTATTTGTGATGGTGATACTA
AACCCGTTGCAGATAATGGAACCGGAGTTCGAGTTTTCAAAAGTGCAATT
ATTTATCGATGCCTTCCCTTCGTTATTTGACCTTATTGAATATAGTTCCA
GCTGGCTTGGAGGTGGTGTATCGAACGCCGATCCCTTGAATGAACAGCTT
TCTATGTTAATGATTGTGTCTTGATAAGTACCAATGGCAACCTTAGAGTG
TTCAAAATGTgtttttgatacttgatacAGTTTACTATTCTGAAACGAAA
CAGAACTGTCCCGAAAAATACAATGTACAACTTTCGTGGAAAAAAATTTC
GGTTGAGTCGGGTGAGGATCTGAATATGATTGATCAAGAAACGAGCTATT
GAAAATATTATCTGCAT Coding sequence (CDS) from alignment at scaffold_58:1284134..1285200 >TCONS_00071115 ID=TCONS_00071115|Name=TCONS_00071115|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_58:1284134..1285200 (Clytia hemisphaerica)
ATTGTATTTACATTCACCACAAAGTCTTCCTTGTCGATTGTTCGAACAGC
TGTTATAAGAAGCACATTTCTTTAAAGTAGGACAGCAATAGAAAGGAGGG
CATTGCACGAAAGCCACATATCCTAAATGATCAGCATATCCCCAATAATT
ACCTTTACTTTTAATACCATTTACGCATGAAGCTTGGTAAGGGCAAGGAT
AGCATGTCACATTGTGAATTGTAGCATCACCAGAAGTATCCCAAGAGACG
TGTGATTTGTTTTTGACATTGTATTTCGTCCCCTCGCATTCTTCGCATGA
CAACCGTACGAAAAATCGGTTGTTCCCTATATATTTCCTCATAATGCCAT
GTATGTTATAGTTTGGTAAACACGATACGCTCGAGTTTAAGATACCTATA
TCTTCTAATACGGCCTGTCTATTTGCTTTGATAAGTAAAATGTTACTTTC
CCTATTGAGGTCACTAGACGACACCACCATCACCTCAGATAAGCGTAAAA
AGATATCGATGCTGTTTGACATTACGATGTATATTGAGCTGAAGAGAATT
GCGGGAGCTCTGTTTTCTGAGAAGGTACAATTACTAAGGTCAACACTCAT
GGATGACGTTATAGTTAATGCAGCTGCCATGGTGGTCGCGAAGTCTTGAT
CGTCGATTAGCGAATTGTTCAAAAATGTTGTATTTGTGATGGTGATACTA
AACCCGTTGCAGATAATGGAACCGGAGTTCGAGTTTTCAAAAGTGCAATT
ATTTATCGATGCCTTCCCTTCGTTATTTGACCTTATTGAATATAGTTCCA
GCTGGCTTGGAGGTGGTGTATCGAACGCCGATCCCTTGAATGAACAGCTT
TCTATGTTAATGATTGTGTCTTGATAAGTACCAATGGCAACCTTAGAGTG
TTCAAAATGTgtttttgatacttgatacAGTTTACTATTCTGAAACGAAA
CAGAACTGTCCCGAAAAATACAATGTACAACTTTCGTGGAAAAAAATTTC
GGTTGAGTCGGGTGAGGATCTGAATATGATTGATCAAGAAACGAGCTATT
GAAAATATTATCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071115-exon-scaffold_58-1491911889:1284134..1285200 | TCONS_00071115-exon-scaffold_58-1491911889:1284134..1285200 | Clytia hemisphaerica | exon |
| TCONS_00071115-exon-scaffold_58-1510915933:1284134..1285200 | TCONS_00071115-exon-scaffold_58-1510915933:1284134..1285200 | Clytia hemisphaerica | exon |
| TCONS_00071115-exon-scaffold_58-1575043694:1284134..1285200 | TCONS_00071115-exon-scaffold_58-1575043694:1284134..1285200 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1284134..1285200 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012332 | P22_tailspike_C-like |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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