TCONS_00071113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071113
Unique NameTCONS_00071113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071113 ID=TCONS_00071113|Name=TCONS_00071113|organism=Clytia hemisphaerica|type=transcript|length=238bp
ACTACTCCAGGAAAAACAACTCAAGGACCATTTGTCAGCACTGACGGTAA
AGGACCATCAACTGCTGTAGCAGGATCTACTGAAGCTCCATCAGAGACTA
CTCCAGGAGCAACAACTCAAGGACCACTTGTCAGTACTGATGGTAAAGGA
CCATCAACTGCTGTAGCAGGAACTACTGAAGCTCCATCTGAGACTACTCC
AGGAGAAACAACTCAAGGACCATTTGTCAGCACTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_58:1248091..1248328

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071113 ID=TCONS_00071113|Name=TCONS_00071113|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at scaffold_58:1248091..1248328 (Clytia hemisphaerica)
CTTCAGTGCTGACAAATGGTCCTTGAGTTGTTTCTCCTGGAGTAGTCTCA
GATGGAGCTTCAGTAGTTCCTGCTACAGCAGTTGATGGTCCTTTACCATC
AGTACTGACAAGTGGTCCTTGAGTTGTTGCTCCTGGAGTAGTCTCTGATG
GAGCTTCAGTAGATCCTGCTACAGCAGTTGATGGTCCTTTACCGTCAGTG
CTGACAAATGGTCCTTGAGTTGTTTTTCCTGGAGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044195XLOC_044195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071113-exon-scaffold_58-1491911889:1248091..1248328TCONS_00071113-exon-scaffold_58-1491911889:1248091..1248328Clytia hemisphaericaexon
TCONS_00071113-exon-scaffold_58-1510915933:1248091..1248328TCONS_00071113-exon-scaffold_58-1510915933:1248091..1248328Clytia hemisphaericaexon
TCONS_00071113-exon-scaffold_58-1575043694:1248091..1248328TCONS_00071113-exon-scaffold_58-1575043694:1248091..1248328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1248091..1248328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.629019	0	3.05894	3.25478	41.5509	34.1378	10.0578	9.29444	9.70451	0.733468	25.9316	48.1734	34.916	14.7322	9.20152	14.2975	102.242	95.8263	18.8304	5.24018	9.10451	9.36401	34.5706	58.9128	2.8151	5.61439	56.2272	42.271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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