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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071108 ID=TCONS_00071108|Name=TCONS_00071108|organism=Clytia hemisphaerica|type=transcript|length=1575bp
CGTTGATTTCTTAATCTTAAATAATTCCATATTAAATGCTATAAAAtatc
ttaaaaactttttacttacaaaatttacaaaaagaacATAATCAGATTCA
CAAAAGTGTTTCTTCCAAATTGTTATTGCATTTATGCAGAACAGACACCA
CGTCTTTTATATCATGGCAAATGTATCCATCCATCAAACTTCTCTTACGT
AATGTTTCGTAAACAATACTCATTCCGCTACCCCCATCGTCATGGTTCCA
GTCAAGTGGTTCGATACGCCGTCGAATAGTATGCGTAGCTTGAGTGCCGT
CGGACCCCGCCGAAGAATGGTGTTGCACAGATAGTACAGACTCGCGCATG
CGTAACTTTAAACGGATAATCTGTTTTTTGAACTCCATGCGGAATTCGGC
GGACATCATATAATAGATAAACGGATTGACACATGAATTGAGGACCAGAA
ATGTTGCAGCGAACTTCCTATGCGTTTCTTCAATTCTCAAGTCAGTAAAT
TGTTCCAAAAGTTTGATGATATTCCACGGTAACATCaacaaagcaaaaca
aaaaacaacaactgcTAACATTTTAGTGACTTTTCGTAATTTTTTATATC
TGGTCTGTATATTAGACGATGTTTGGTGGACGCTGCTTTGTCGCATGTgt
tcttttaagaaaaaatggaTTCGAAGGAACGTCAACAAAATGATGAGCAA
GGGAATGAAATACCAGACGAACGTTTCCACGATGTTGTCAACAGCAACCA
TTGTGCTTTGAGCGTCGTGTGAACATACACGGAATAATATGCGAGTCTCG
TTCATTATTTTATATTTCTGTTCGTATAATTGATAAGACATGATGGAAGG
GATGGATTCGGCCACAAAGGAAAACACCCAAATGAAGAGAATGATGAGAC
GGATTCTCCGCAACGTCCATTTCGCATCCATTGAATGTACAATGGTGTGG
TAACGAGCTATCGCTATGGCAACAATGGTTGCTAAGGAAACGATATGAAA
GAAATCAGCAGATGAGGACAAAAGTTTGCACATGGGCTCACCGAGTGGCC
AGTTGTTACCAGATAACCATTTGACGGCGAGGACGGGGAAACTGATGACC
AGCACACAGAGATCAGCGATCGCAAGGTTCAACAAAAACAGGTTCTGATG
GTTCGATCTTTGTTTGCCGAACGAGAGGACGACCGCTGCACAGATATTTC
CCACAGAGCCGAAGAAAGCGAAGATACAGTTGATAGCAAGGAAGAAATAG
ATCATGTTTTTCGACTCCCCTGCTTCATCTCCACCatcattgaaagaaaa
attgcCAGGAGGGTGTATCGCCGTCAATCCATGTATTGATTcgttcattt
tttgtttttttgctgaaaaatgaatgaaaattaactttaTCCAAAAAGTA
ACTAGGTTATTAaggctaaaataaaaaaaatgtagtgtttccggaaaccg
gccgggtgtaaaaactttttttttctgacccggccgcagactatgggttc
gtCTATATGGTTcctcataaagaaaatcaagttgaccattcaagctatca
aacgtcgtttggttagatattcccg Run BLAST on NCBI protein sequence of TCONS_00071108-protein >TCONS_00071108-protein ID=TCONS_00071108-protein|Name=TCONS_00071108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
GISNQTTFDSLNGQLDFLYEEPYRRTHSLRPGQKKKVFTPGRFPETLHFF
YFSLNNLVTFWIKLIFIHFSAKKQKMNESIHGLTAIHPPGNFSFNDGGDE
AGESKNMIYFFLAINCIFAFFGSVGNICAAVVLSFGKQRSNHQNLFLLNL
AIADLCVLVISFPVLAVKWLSGNNWPLGEPMCKLLSSSADFFHIVSLATI
VAIAIARYHTIVHSMDAKWTLRRIRLIILFIWVFSFVAESIPSIMSYQLY
EQKYKIMNETRILFRVCSHDAQSTMVAVDNIVETFVWYFIPLLIILLTFL
RIHFFLKEHMRQSSVHQTSSNIQTRYKKLRKVTKMLAVVVFCFALLMLPW
NIIKLLEQFTDLRIEETHRKFAATFLVLNSCVNPFIYYMMSAEFRMEFKK
QIIRLKLRMRESVLSVQHHSSAGSDGTQATHTIRRRIEPLDWNHDDGGSG
MSIVYETLRKRSLMDGYICHDIKDVVSVLHKCNNNLEETLL Run BLAST on NCBI transcript from alignment at scaffold_58:966389..967963 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071108 ID=TCONS_00071108|Name=TCONS_00071108|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at scaffold_58:966389..967963 (Clytia hemisphaerica)
cgggaatatctaaccaaacgacgtttgatagcttgaatggtcaacttgat
tttctttatgaggAACCATATAGacgaacccatagtctgcggccgggtca
gaaaaaaaaagtttttacacccggccggtttccggaaacactacattttt
tttattttagcctTAATAACCTAGTTACTTTTTGGAtaaagttaattttc
attcatttttcagcaaaaaaacaaaaaatgaacgAATCAATACATGGATT
GACGGCGATACACCCTCCTGgcaatttttctttcaatgatGGTGGAGATG
AAGCAGGGGAGTCGAAAAACATGATCTATTTCTTCCTTGCTATCAACTGT
ATCTTCGCTTTCTTCGGCTCTGTGGGAAATATCTGTGCAGCGGTCGTCCT
CTCGTTCGGCAAACAAAGATCGAACCATCAGAACCTGTTTTTGTTGAACC
TTGCGATCGCTGATCTCTGTGTGCTGGTCATCAGTTTCCCCGTCCTCGCC
GTCAAATGGTTATCTGGTAACAACTGGCCACTCGGTGAGCCCATGTGCAA
ACTTTTGTCCTCATCTGCTGATTTCTTTCATATCGTTTCCTTAGCAACCA
TTGTTGCCATAGCGATAGCTCGTTACCACACCATTGTACATTCAATGGAT
GCGAAATGGACGTTGCGGAGAATCCGTCTCATCATTCTCTTCATTTGGGT
GTTTTCCTTTGTGGCCGAATCCATCCCTTCCATCATGTCTTATCAATTAT
ACGAACAGAAATATAAAATAATGAACGAGACTCGCATATTATTCCGTGTA
TGTTCACACGACGCTCAAAGCACAATGGTTGCTGTTGACAACATCGTGGA
AACGTTCGTCTGGTATTTCATTCCCTTGCTCATCATTTTGTTGACGTTCC
TTCGAAtccattttttcttaaaagaacACATGCGACAAAGCAGCGTCCAC
CAAACATCGTCTAATATACAGACCAGATATAAAAAATTACGAAAAGTCAC
TAAAATGTTAgcagttgttgttttttgttttgctttgttGATGTTACCGT
GGAATATCATCAAACTTTTGGAACAATTTACTGACTTGAGAATTGAAGAA
ACGCATAGGAAGTTCGCTGCAACATTTCTGGTCCTCAATTCATGTGTCAA
TCCGTTTATCTATTATATGATGTCCGCCGAATTCCGCATGGAGTTCAAAA
AACAGATTATCCGTTTAAAGTTACGCATGCGCGAGTCTGTACTATCTGTG
CAACACCATTCTTCGGCGGGGTCCGACGGCACTCAAGCTACGCATACTAT
TCGACGGCGTATCGAACCACTTGACTGGAACCATGACGATGGGGGTAGCG
GAATGAGTATTGTTTACGAAACATTACGTAAGAGAAGTTTGATGGATGGA
TACATTTGCCATGATATAAAAGACGTGGTGTCTGTTCTGCATAAATGCAA
TAACAATTTGGAAGAAACACTTTTGTGAATCTGATTATgttctttttgta
aattttgtaagtaaaaagtttttaagataTTTTATAGCATTTAATATGGA
ATTATTTAAGATTAAGAAATCAACG Coding sequence (CDS) from alignment at scaffold_58:966389..967963 >TCONS_00071108 ID=TCONS_00071108|Name=TCONS_00071108|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_58:966389..967963 (Clytia hemisphaerica)
ggaatatctaaccaaacgacgtttgatagcttgaatggtcaacttgattt
tctttatgaggAACCATATAGacgaacccatagtctgcggccgggtcaga
aaaaaaaagtttttacacccggccggtttccggaaacactacattttttt
tattttagcctTAATAACCTAGTTACTTTTTGGAtaaagttaattttcat
tcatttttcagcaaaaaaacaaaaaatgaacgAATCAATACATGGATTGA
CGGCGATACACCCTCCTGgcaatttttctttcaatgatGGTGGAGATGAA
GCAGGGGAGTCGAAAAACATGATCTATTTCTTCCTTGCTATCAACTGTAT
CTTCGCTTTCTTCGGCTCTGTGGGAAATATCTGTGCAGCGGTCGTCCTCT
CGTTCGGCAAACAAAGATCGAACCATCAGAACCTGTTTTTGTTGAACCTT
GCGATCGCTGATCTCTGTGTGCTGGTCATCAGTTTCCCCGTCCTCGCCGT
CAAATGGTTATCTGGTAACAACTGGCCACTCGGTGAGCCCATGTGCAAAC
TTTTGTCCTCATCTGCTGATTTCTTTCATATCGTTTCCTTAGCAACCATT
GTTGCCATAGCGATAGCTCGTTACCACACCATTGTACATTCAATGGATGC
GAAATGGACGTTGCGGAGAATCCGTCTCATCATTCTCTTCATTTGGGTGT
TTTCCTTTGTGGCCGAATCCATCCCTTCCATCATGTCTTATCAATTATAC
GAACAGAAATATAAAATAATGAACGAGACTCGCATATTATTCCGTGTATG
TTCACACGACGCTCAAAGCACAATGGTTGCTGTTGACAACATCGTGGAAA
CGTTCGTCTGGTATTTCATTCCCTTGCTCATCATTTTGTTGACGTTCCTT
CGAAtccattttttcttaaaagaacACATGCGACAAAGCAGCGTCCACCA
AACATCGTCTAATATACAGACCAGATATAAAAAATTACGAAAAGTCACTA
AAATGTTAgcagttgttgttttttgttttgctttgttGATGTTACCGTGG
AATATCATCAAACTTTTGGAACAATTTACTGACTTGAGAATTGAAGAAAC
GCATAGGAAGTTCGCTGCAACATTTCTGGTCCTCAATTCATGTGTCAATC
CGTTTATCTATTATATGATGTCCGCCGAATTCCGCATGGAGTTCAAAAAA
CAGATTATCCGTTTAAAGTTACGCATGCGCGAGTCTGTACTATCTGTGCA
ACACCATTCTTCGGCGGGGTCCGACGGCACTCAAGCTACGCATACTATTC
GACGGCGTATCGAACCACTTGACTGGAACCATGACGATGGGGGTAGCGGA
ATGAGTATTGTTTACGAAACATTACGTAAGAGAAGTTTGATGGATGGATA
CATTTGCCATGATATAAAAGACGTGGTGTCTGTTCTGCATAAATGCAATA
ACAATTTGGAAGAAACACTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071108-exon-scaffold_58-1491911889:966389..967963 | TCONS_00071108-exon-scaffold_58-1491911889:966389..967963 | Clytia hemisphaerica | exon |
| TCONS_00071108-exon-scaffold_58-1510915933:966389..967963 | TCONS_00071108-exon-scaffold_58-1510915933:966389..967963 | Clytia hemisphaerica | exon |
| TCONS_00071108-exon-scaffold_58-1575043694:966389..967963 | TCONS_00071108-exon-scaffold_58-1575043694:966389..967963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:966389..967963 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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