TCONS_00071105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071105
Unique NameTCONS_00071105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071105 ID=TCONS_00071105|Name=TCONS_00071105|organism=Clytia hemisphaerica|type=transcript|length=363bp
tttgtttttttgtacgCTTTCTTCGGTAATATCTTCGTAATCGACTACTT
TTAATCCAAGGCGTTGATATATGGTCGCAGTTGCTTGGTTAGATTCAGCA
TTGATAGTTGATTGACTGGATTCAGTTTGAAGCTTTCTAATAACGACATA
AAATGTTGCACCTTTAACATTCGCAAGCTTGTGTTTCAGAAAAACCATTA
ACTGAAGCATCGTATCAGTGTCTTCTTGTAGAAGTTCATCGAGGCCTTTC
TTGTTTTGGAAAATGTCCATATTNTTTAGAGTCACTTTAGGGTCAATTGG
ACCCactgacaaaattgaaaaacttcgtttttgtaagattttagaTTGCT
GCGAATAAGGTCC
Run BLAST on NCBI

protein sequence of TCONS_00071105-protein

>TCONS_00071105-protein ID=TCONS_00071105-protein|Name=TCONS_00071105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
GPYSQQSKILQKRSFSILSVGPIDPKVTLXNMDIFQNKKGLDELLQEDTD
TMLQLMVFLKHKLANVKGATFYVVIRKLQTESSQSTINAESNQATATIYQ
RLGLKVVDYEDITEESVQKNK
Run BLAST on NCBI

transcript from alignment at scaffold_58:844938..845300

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071105 ID=TCONS_00071105|Name=TCONS_00071105|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_58:844938..845300 (Clytia hemisphaerica)
GGACCTTATTCGCAGCAAtctaaaatcttacaaaaacgaagtttttcaat
tttgtcagtGGGTCCAATTGACCCTAAAGTGACTCTAAANAATATGGACA
TTTTCCAAAACAAGAAAGGCCTCGATGAACTTCTACAAGAAGACACTGAT
ACGATGCTTCAGTTAATGGTTTTTCTGAAACACAAGCTTGCGAATGTTAA
AGGTGCAACATTTTATGTCGTTATTAGAAAGCTTCAAACTGAATCCAGTC
AATCAACTATCAATGCTGAATCTAACCAAGCAACTGCGACCATATATCAA
CGCCTTGGATTAAAAGTAGTCGATTACGAAGATATTACCGAAGAAAGcgt
acaaaaaaacaaa

Coding sequence (CDS) from alignment at scaffold_58:844938..845300

>TCONS_00071105 ID=TCONS_00071105|Name=TCONS_00071105|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_58:844938..845300 (Clytia hemisphaerica)
GGACCTTATTCGCAGCAAtctaaaatcttacaaaaacgaagtttttcaat
tttgtcagtGGGTCCAATTGACCCTAAAGTGACTCTAAANAATATGGACA
TTTTCCAAAACAAGAAAGGCCTCGATGAACTTCTACAAGAAGACACTGAT
ACGATGCTTCAGTTAATGGTTTTTCTGAAACACAAGCTTGCGAATGTTAA
AGGTGCAACATTTTATGTCGTTATTAGAAAGCTTCAAACTGAATCCAGTC
AATCAACTATCAATGCTGAATCTAACCAAGCAACTGCGACCATATATCAA
CGCCTTGGATTAAAAGTAGTCGATTACGAAGATATTACCGAAGAAAGcgt
acaaaaaaacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044187XLOC_044187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071105-exon-scaffold_58-1491911889:844938..845300TCONS_00071105-exon-scaffold_58-1491911889:844938..845300Clytia hemisphaericaexon
TCONS_00071105-exon-scaffold_58-1510915933:844938..845300TCONS_00071105-exon-scaffold_58-1510915933:844938..845300Clytia hemisphaericaexon
TCONS_00071105-exon-scaffold_58-1575043694:844938..845300TCONS_00071105-exon-scaffold_58-1575043694:844938..845300Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071105-proteinTCONS_00071105-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:844938..845300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.9215	0.673956	0.521685	1.78635	3.285	4.90381	2.51159	1.86564	5.19599	1.77939	0.233401	1.38086	1.42346	0.663938	3.00873	3.6031	0	2.9552	0.734681	0.512527	0	0	0.485079	0	0	0.238925	0.478655	0	0.255698	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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