TCONS_00071089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071089
Unique NameTCONS_00071089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071089 ID=TCONS_00071089|Name=TCONS_00071089|organism=Clytia hemisphaerica|type=transcript|length=499bp
TGCTATGCTATGAtatatttctttatatttttaaatCTCCATTTTTAGTA
ACTtcataaaagtttaaaatttctaaaataagaACTATACTACATAGTGT
CAAAAGACTGTTCCGCGTGCGTCGAAAGGCAAAGGGGCGTCAAACTCAAA
AGGCAcgctttttgagccaaaaatgaaGCCagatatttaaaagttttcac
cCTCTCTTCGCTAAAAACACTGGTATACGAATGGTTATTATTCAAAAGCC
CAAACTGTACTAGAAtgcaaaattcaaaatcatttcGGAAAATTGTAGAG
AAATGCTGGATAAAAAGATACAAAATATTGACATTTATATTAGCCTAGAT
aatcaatatttgaaaataagaaaaattgattGAGAAATATTCAGGAAGGG
TGCGTTGATACGCCCTCCCAAATCAAACCATTTTTTTTGCCATAGGAAAT
AGATACGTTTACACCAAAGTGTGAAATTGAAAATCCATTAGATATAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_58:467983..468481

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071089 ID=TCONS_00071089|Name=TCONS_00071089|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at scaffold_58:467983..468481 (Clytia hemisphaerica)
TCTTATATCTAATGGATTTTCAATTTCACACTTTGGTGTAAACGTATCTA
TTTCCTATGGCAAAAAAAATGGTTTGATTTGGGAGGGCGTATCAACGCAC
CCTTCCTGAATATTTCTCaatcaatttttcttattttcaaatattgattA
TCTAGGCTAATATAAATGTCAATATTTTGTATCTTTTTATCCAGCATTTC
TCTACAATTTTCCgaaatgattttgaattttgcaTTCTAGTACAGTTTGG
GCTTTTGAATAATAACCATTCGTATACCAGTGTTTTTAGCGAAGAGAGgg
tgaaaacttttaaatatctGGCttcatttttggctcaaaaagcgTGCCTT
TTGAGTTTGACGCCCCTTTGCCTTTCGACGCACGCGGAACAGTCTTTTGA
CACTATGTAGTATAGTtcttattttagaaattttaaacttttatgaAGTT
ACTAAAAATGGAGatttaaaaatataaagaaatataTCATAGCATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044171XLOC_044171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071089-exon-scaffold_58-1491911889:467983..468481TCONS_00071089-exon-scaffold_58-1491911889:467983..468481Clytia hemisphaericaexon
TCONS_00071089-exon-scaffold_58-1510915933:467983..468481TCONS_00071089-exon-scaffold_58-1510915933:467983..468481Clytia hemisphaericaexon
TCONS_00071089-exon-scaffold_58-1575043694:467983..468481TCONS_00071089-exon-scaffold_58-1575043694:467983..468481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:467983..468481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.157284	0.147247	2.88655	0.76617	2.97465	2.60723	0.6509	1.35193	0.277868	1.19278	0	0.0941309	0.520188	0.136085	0	0	0	0.127525	0	0.117225	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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