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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071088 ID=TCONS_00071088|Name=TCONS_00071088|organism=Clytia hemisphaerica|type=transcript|length=1831bp
TTATGACTCAAGAAAGCGTTTAAAATAAAGCAACTTTATAACTTTTATAA
TCATTAGTACTTTTTATGATACTGAAAACAGTTTCGtctaaatgaaatta
aatttaaaCCCCCTAATTTTTGAATCTGACTCACGGCCTTATCCATATTT
TAAAAGCATGGTTTTGCAACCTCCTTTCAAACAAGAACACGGACAAGTCA
AGAAGGCTGTGCCAAGCAAACTCAACAAACTTCACAACCAAAATGGCAAA
GGCTCCAGCTGTCGGAATCGATCTTGGAACAACTTACTCCTGTGTTGGTG
TATTCCAACATGGAAAAGTTGATATCATTGCCAACGATCAAGGTAACAGG
ACTACACCAAGTTATGTTGCTTTCAACGACAGCGAAAGATTGATTGGAGA
TTCAGCCAAAAATCAATCTGCCATGAATCCATCCAACACAGTTTTTGGTA
AGAACTATTATTTATCATTATACCTCCATAGGTTAGCTTTAAATATTCAA
GATCCTTTTGAGTAATTCAAGAATATAACAAGATATGGCCATATCAACAT
TCAGTAATGACATTTCTGCACTGTAGTTTATTTTCATAGTattgtaccgt
gagattgggtaacttgcatcagtggaggctaacatgcatagccctcaaat
gaaagacttggctggtcattaaaatacaaagttaaatcaaaacaaaaatg
gtagagtagagctgcgagcggagctgtgagcggagcttCGTAGTTGTaat
ttaatgaccagacaggtcattcattagagggctatgcatgttagcctcca
ctgatgcaagttacccaatctcacggtaataGACCGGAAACCCATCTATC
GCTTCACTGAAGAAATCTCCAAATGTCGAATTCCTTGTTCATTCCTTGTA
CTATTTTCCTACTGTCTTTGAAGATACGTCAATTTTAGCCAGTTATTCTA
GGCTAAGTATTGTAGCTAAATAAACAAGGAACTTGTTGAAGGAACTCAAG
GCTGATATTGTCTGGAAAAATAAGGATCTACGCTCGCAGCCAAGTTATGG
TTCCTTATATTAAAAGGTGTATTCCAAATGTCTTGTAACTAAGGAATGGT
TCTGCCTGGGGTCCACTATAAACAGTCAAGTAATTATATACCTCAATTGT
GGTGATTATTATTTTTACTGAATTGTAGAATAAACAACATTGTCATATAC
TGCAATACACCTCTCCTGTAATTGTCCGAGAGAACTTAAGATAAGctcaa
aaaaataactttccctaaggaaacccaggcaaaaatgggtttgttcgcgc
gcattagttttacgaattacgggaaaggtgtatacATCCAAAGAAACAAA
GGTGTGTACATCCAAAGAAACAaaattcaaggagaaaacaggcaattttt
gtatatatataATTTGatatactatatatatatatatatataatagtgaa
agaaataagaatttctgtccaactgtattcactcaggagatgtGGGTGGT
AGAGCAgtatatgcatttcgtccttattaggactcgtcagcactgcatac
atATATATGATTAATCTTTTTAATGCATAGATGGGGTATTTTCTACAATC
AGATTTGATGTTAGTTATCTTTTTTCACTAGCACTATATGTATATATTcg
ttataagcctttgtagaCTTAACACAAATaaaactaccgcaattgaggga
tttcccagTGGTGCTAGCTATGTGAGAGCAACAAGGTCCCTTTTTGAAGC
TACGGTCAAAACATCTATTGCCTGCAATTCTGGGAAAAGTTGTGTATATA
CATACTCTTAGGTTCAAACGCCGCCCCCCCC Run BLAST on NCBI transcript from alignment at scaffold_58:423748..425578 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071088 ID=TCONS_00071088|Name=TCONS_00071088|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_58:423748..425578 (Clytia hemisphaerica)
GGGGGGGGCGGCGTTTGAACCTAAGAGTATGTATATACACAACTTTTCCC
AGAATTGCAGGCAATAGATGTTTTGACCGTAGCTTCAAAAAGGGACCTTG
TTGCTCTCACATAGCTAGCACCActgggaaatccctcaattgcggtagtt
ttATTTGTGTTAAGtctacaaaggcttataacgAATATATACATATAGTG
CTAGTGAAAAAAGATAACTAACATCAAATCTGATTGTAGAAAATACCCCA
TCTATGCATTAAAAAGATTAATCATATATatgtatgcagtgctgacgagt
cctaataaggacgaaatgcatatacTGCTCTACCACCCacatctcctgag
tgaatacagttggacagaaattcttatttctttcactattatatatatat
atatatatagtatatCAAATtatatatatacaaaaattgcctgttttctc
cttgaatttTGTTTCTTTGGATGTACACACCTTTGTTTCTTTGGATgtat
acacctttcccgtaattcgtaaaactaatgcgcgcgaacaaacccatttt
tgcctgggtttccttagggaaagttatttttttgagCTTATCTTAAGTTC
TCTCGGACAATTACAGGAGAGGTGTATTGCAGTATATGACAATGTTGTTT
ATTCTACAATTCAGTAAAAATAATAATCACCACAATTGAGGTATATAATT
ACTTGACTGTTTATAGTGGACCCCAGGCAGAACCATTCCTTAGTTACAAG
ACATTTGGAATACACCTTTTAATATAAGGAACCATAACTTGGCTGCGAGC
GTAGATCCTTATTTTTCCAGACAATATCAGCCTTGAGTTCCTTCAACAAG
TTCCTTGTTTATTTAGCTACAATACTTAGCCTAGAATAACTGGCTAAAAT
TGACGTATCTTCAAAGACAGTAGGAAAATAGTACAAGGAATGAACAAGGA
ATTCGACATTTGGAGATTTCTTCAGTGAAGCGATAGATGGGTTTCCGGTC
tattaccgtgagattgggtaacttgcatcagtggaggctaacatgcatag
ccctctaatgaatgacctgtctggtcattaaattACAACTACGaagctcc
gctcacagctccgctcgcagctctactctaccatttttgttttgatttaa
ctttgtattttaatgaccagccaagtctttcatttgagggctatgcatgt
tagcctccactgatgcaagttacccaatctcacggtacaatACTATGAAA
ATAAACTACAGTGCAGAAATGTCATTACTGAATGTTGATATGGCCATATC
TTGTTATATTCTTGAATTACTCAAAAGGATCTTGAATATTTAAAGCTAAC
CTATGGAGGTATAATGATAAATAATAGTTCTTACCAAAAACTGTGTTGGA
TGGATTCATGGCAGATTGATTTTTGGCTGAATCTCCAATCAATCTTTCGC
TGTCGTTGAAAGCAACATAACTTGGTGTAGTCCTGTTACCTTGATCGTTG
GCAATGATATCAACTTTTCCATGTTGGAATACACCAACACAGGAGTAAGT
TGTTCCAAGATCGATTCCGACAGCTGGAGCCTTTGCCATTTTGGTTGTGA
AGTTTGTTGAGTTTGCTTGGCACAGCCTTCTTGACTTGTCCGTGTTCTTG
TTTGAAAGGAGGTTGCAAAACCATGCTTTTAAAATATGGATAAGGCCGTG
AGTCAGATTCAAAAATTAGGGGGtttaaatttaatttcatttagaCGAAA
CTGTTTTCAGTATCATAAAAAGTACTAATGATTATAAAAGTTATAAAGTT
GCTTTATTTTAAACGCTTTCTTGAGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071088-exon-scaffold_58-1491911889:423748..425578 | TCONS_00071088-exon-scaffold_58-1491911889:423748..425578 | Clytia hemisphaerica | exon |
| TCONS_00071088-exon-scaffold_58-1510915933:423748..425578 | TCONS_00071088-exon-scaffold_58-1510915933:423748..425578 | Clytia hemisphaerica | exon |
| TCONS_00071088-exon-scaffold_58-1575043694:423748..425578 | TCONS_00071088-exon-scaffold_58-1575043694:423748..425578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:423748..425578 . |
Blast
BLAST of TCONS_00071088 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.150e-33 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 3
Query: 243 MAKAPAVGIDLGTTYSCVGVFQHGKVDIIANDQGNRTTPSYVAFNDSERLIGDSAKNQSAMNPSNTVF 446
M+K PAVGIDLGTTYSCVGVFQHGKV+IIANDQGNRTTPSYVAF D+ERLIGD+AKNQ AMNP+NTVF
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68
The following BLAST results are available for this feature:
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