TCONS_00071074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071074
Unique NameTCONS_00071074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071074 ID=TCONS_00071074|Name=TCONS_00071074|organism=Clytia hemisphaerica|type=transcript|length=602bp
GCTATGAAACGATTGTCAAGTTGTTTTGGGATTTGATATGATGGGACAAG
TTCTTTGAGAAAGATGTCAGATttaatgattgttttgattttgacacgtA
CGTGACGTGGTATACAAGCCTGTTACGATTGAATATTTGTATCTGCtttc
tcaaagttgaaatgACAAATTGGCGTTGTTACTTGTGACTTGAAGAATAA
GGGTAGTGATCCAGTTTTTGCTTTTCGTCTTTATAGCCTTTTCGTCTTTT
GCTCTAATAAGATCAAATTAAATGCTTGTTATAGTGGATTTTTGACTGGA
TTGATGTGTCATTTTGcatgtgttttgatttttgagatgtTGTCATAAAC
TTTTTGCAGGTCCAAAATCACCCAAACATTTTCTGCAACTCTCCTTGTTT
TATTATTGATTTAAACGACAGCAAGTCAAAGGAGGCTGTTCTCTAACTAT
CATTTCTTCCATTGTTCTGGGGACTGGTcagtttatatttaaaaaatttt
caacggCCTGAATTTATTATTCTTAACGTTTAACTAATATCCTACATTTG
AGGTAACAACATTTGACCTTTTTAAGCAAGGGTAGTACCAGCAATGCCAG
AC
Run BLAST on NCBI

transcript from alignment at scaffold_58:143492..144093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071074 ID=TCONS_00071074|Name=TCONS_00071074|organism=Clytia hemisphaerica|type=transcript|length=602bp|location=Sequence derived from alignment at scaffold_58:143492..144093 (Clytia hemisphaerica)
GTCTGGCATTGCTGGTACTACCCTTGCTTAAAAAGGTCAAATGTTGTTAC
CTCAAATGTAGGATATTAGTTAAACGTTAAGAATAATAAATTCAGGccgt
tgaaaattttttaaatataaactgACCAGTCCCCAGAACAATGGAAGAAA
TGATAGTTAGAGAACAGCCTCCTTTGACTTGCTGTCGTTTAAATCAATAA
TAAAACAAGGAGAGTTGCAGAAAATGTTTGGGTGATTTTGGACCTGCAAA
AAGTTTATGACAacatctcaaaaatcaaaacacatgCAAAATGACACATC
AATCCAGTCAAAAATCCACTATAACAAGCATTTAATTTGATCTTATTAGA
GCAAAAGACGAAAAGGCTATAAAGACGAAAAGCAAAAACTGGATCACTAC
CCTTATTCTTCAAGTCACAAGTAACAACGCCAATTTGTcatttcaacttt
gagaaaGCAGATACAAATATTCAATCGTAACAGGCTTGTATACCACGTCA
CGTacgtgtcaaaatcaaaacaatcattaaATCTGACATCTTTCTCAAAG
AACTTGTCCCATCATATCAAATCCCAAAACAACTTGACAATCGTTTCATA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044156XLOC_044156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071074-exon-scaffold_58-1491911889:143492..144093TCONS_00071074-exon-scaffold_58-1491911889:143492..144093Clytia hemisphaericaexon
TCONS_00071074-exon-scaffold_58-1510915933:143492..144093TCONS_00071074-exon-scaffold_58-1510915933:143492..144093Clytia hemisphaericaexon
TCONS_00071074-exon-scaffold_58-1575043694:143492..144093TCONS_00071074-exon-scaffold_58-1575043694:143492..144093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:143492..144093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.912839	1.46124	0.366987	1.09648	0.402976	0.480289	0.808037	0.843557	0.445828	0.328074	0.625459	0.521615	0.613045	0.217317	0.173833	0	0.73241	0	0	0	0.196088	0.944963	0	0.461974	1.36796	0.80412	0.246197	0.577034	0.68224	0.916478
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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