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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071071 ID=TCONS_00071071|Name=TCONS_00071071|organism=Clytia hemisphaerica|type=transcript|length=1646bp
TTAGAAATGATATTtcggaaatataattttttttattcagctAAAGAATA
CAGACTACTTTGTAATGTTAAAAATagcgaaaaaatgtttttaataataa
tacttggaaaaagaacaataaaaactaacaagtcaaaaaaaaaccaCAGC
CCTCCTAGTAAAAGCCCTATTATACTACTTGTATCAGTTCACTTGTTGTT
GTTTTAGTTTGATAAAGTCACATCATTAAATCATAAATACGATAAAGCTG
CCAAAAAAGTATTTTGTTGATATATAATAAAATACACGTAAGGATGAAAT
TCGGGATTTGGAATTTTAACGATACTTTTTAAACAGACTGGATTTTTCTA
ACTCGATCCCTTCTCCAGATGGTGAAAGTTTTCTCACAAAAACTTCTATT
AATAAAAATTTGCTTCAAGCTTTTAAGACTGATTGGGAAAAAAAGTTTGC
AAtttcaaaactgttttttttccGAGAAAGTGGACACACCCAAAACGTTG
TCCACTCACTGAATACAGAAAAAAAACCATCCCAGTATTTTCCGCATTTA
TTCACAAAATAAATGAATCATCTGAAATCTCCCCAAGCCTCCCAAATAAA
AAATCCTCCCATCTTTCAgtgtattttacattttttaaggTTCTAAATTC
TCTTGAAAATCGctataaaaatatatacataaaGCTAATGTTTCCACTTA
ACAAATTtgaatacttttttttactttctacACATAAAATTGGTTTCTTA
TGTTAACTTACCATATACTTCGAGGTTATATCTAATAAGCAAGTCAAGGG
AGGGGGTTCTAAGGTGAGCGGGTATGTGCGAGCGATAAAGGTTACCTTTT
TCATACATACCTCAAAAATCTATGGTAAAAGATATGGACCAAAGTTTTCC
AAAACATCTCTCCAAGagtctcaaaaatgtcaaaaaatctttctatcttt
ctctctaagggttgattatcaatttttttgctcagacatacccgtcacca
ggcaaacctagtaccccaaACCCGTTTCTGATTCTCAAGAATAAGTCAAG
GTCAAACAgtaatagcgagattatgtatctggaattctctacggctacgg
ctaaagTGGTCAAACAGTAATGTCATTGTGTATAATTTTGGAACGCAAAA
TTAAGAATggcgtcatcaatttttttccgaattaaaaaatacaaCCCATT
GTCATTGAAGATATTACGagatttgctgattttttgaaactttcagttgc
aaaataatttcaagcCTTAAAGCTTGGCCTATGGGAATGTATACCCTTAG
GGTAGAGCccaaaaaatgctcaaaatgaCCTCATCTCCATAACGAGGCTa
attagaaaaaaacttttaattaagTATAATATAATCTATAAAAAAGCAAC
AAACTTTtctgtcaaaattaaaaattgaaaaaacaaatttctctTAAATC
CTTataatgaagtttttttttggtaatatgaaaaataatttaagaaaaaa
tttctaCTACTTCACACAAAATACacttaaaatgaagaaaaaaaatctta
aagatttttctaaaaaaatgatttctcaGATATATATTTACTTGAGGGGG
GTTAATTTTGTTATCAAACCTGTGCACATATTTGCTTAACTTTCAT Run BLAST on NCBI transcript from alignment at scaffold_58:36878..38523 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071071 ID=TCONS_00071071|Name=TCONS_00071071|organism=Clytia hemisphaerica|type=transcript|length=1646bp|location=Sequence derived from alignment at scaffold_58:36878..38523 (Clytia hemisphaerica)
ATGAAAGTTAAGCAAATATGTGCACAGGTTTGATAACAAAATTAACCCCC
CTCAAGTAAATATATATCtgagaaatcatttttttagaaaaatctttaag
attttttttcttcattttaagtGTATTTTGTGTGAAGTAGtagaaatttt
ttcttaaattatttttcatattaccaaaaaaaaacttcattatAAGGATT
TAagagaaatttgttttttcaatttttaattttgacagaAAAGTTTGTTG
CTTTTTTATAGATTATATTATActtaattaaaagtttttttctaattAGC
CTCGTTATGGAGATGAGGtcattttgagcattttttggGCTCTACCCTAA
GGGTATACATTCCCATAGGCCAAGCTTTAAGgcttgaaattattttgcaa
ctgaaagtttcaaaaaatcagcaaatctCGTAATATCTTCAATGACAATG
GGttgtattttttaattcggaaaaaaattgatgacgccATTCTTAATTTT
GCGTTCCAAAATTATACACAATGACATTACTGTTTGACCActttagccgt
agccgtagagaattccagatacataatctcgctattacTGTTTGACCTTG
ACTTATTCTTGAGAATCAGAAACGGGTttggggtactaggtttgcctggt
gacgggtatgtctgagcaaaaaaattgataatcaacccttagagagaaag
atagaaagattttttgacatttttgagactCTTGGAGAGATGTTTTGGAA
AACTTTGGTCCATATCTTTTACCATAGATTTTTGAGGTATGTATGAAAAA
GGTAACCTTTATCGCTCGCACATACCCGCTCACCTTAGAACCCCCTCCCT
TGACTTGCTTATTAGATATAACCTCGAAGTATATGGTAAGTTAACATAAG
AAACCAATTTTATGTgtagaaagtaaaaaaaagtattcaAATTTGTTAAG
TGGAAACATTAGCtttatgtatatatttttatagCGATTTTCAAGAGAAT
TTAGAAccttaaaaaatgtaaaatacacTGAAAGATGGGAGGATTTTTTA
TTTGGGAGGCTTGGGGAGATTTCAGATGATTCATTTATTTTGTGAATAAA
TGCGGAAAATACTGGGATGGTTTTTTTTCTGTATTCAGTGAGTGGACAAC
GTTTTGGGTGTGTCCACTTTCTCggaaaaaaaacagttttgaaaTTGCAA
ACTTTTTTTCCCAATCAGTCTTAAAAGCTTGAAGCAAATTTTTATTAATA
GAAGTTTTTGTGAGAAAACTTTCACCATCTGGAGAAGGGATCGAGTTAGA
AAAATCCAGTCTGTTTAAAAAGTATCGTTAAAATTCCAAATCCCGAATTT
CATCCTTACGTGTATTTTATTATATATCAACAAAATACTTTTTTGGCAGC
TTTATCGTATTTATGATTTAATGATGTGACTTTATCAAACTAAAACAACA
ACAAGTGAACTGATACAAGTAGTATAATAGGGCTTTTACTAGGAGGGCTG
tggtttttttttgacttgttagtttttattgttctttttccaagtattat
tattaaaaacattttttcgctATTTTTAACATTACAAAGTAGTCTGTATT
CTTTagctgaataaaaaaaattatatttccgaAATATCATTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071071-exon-scaffold_58-1491911889:36878..38523 | TCONS_00071071-exon-scaffold_58-1491911889:36878..38523 | Clytia hemisphaerica | exon |
| TCONS_00071071-exon-scaffold_58-1510915933:36878..38523 | TCONS_00071071-exon-scaffold_58-1510915933:36878..38523 | Clytia hemisphaerica | exon |
| TCONS_00071071-exon-scaffold_58-1575043694:36878..38523 | TCONS_00071071-exon-scaffold_58-1575043694:36878..38523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:36878..38523 . |
Blast
The following BLAST results are available for this feature:
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