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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071067 ID=TCONS_00071067|Name=TCONS_00071067|organism=Clytia hemisphaerica|type=transcript|length=1878bpRun BLAST on NCBI protein sequence of TCONS_00071067-protein >TCONS_00071067-protein ID=TCONS_00071067-protein|Name=TCONS_00071067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp MSGMGLNDHHEEEVKKFLKFARYNRQQQLRSVEGSFQDLKDSRLQEDTFTRun BLAST on NCBI transcript from alignment at scaffold_58:1460278..1470245- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071067 ID=TCONS_00071067|Name=TCONS_00071067|organism=Clytia hemisphaerica|type=transcript|length=9968bp|location=Sequence derived from alignment at scaffold_58:1460278..1470245- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1460278..1470245- >TCONS_00071067 ID=TCONS_00071067|Name=TCONS_00071067|organism=Clytia hemisphaerica|type=CDS|length=10944bp|location=Sequence derived from alignment at scaffold_58:1460278..1470245- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071067 vs. Swiss-Prot (Human)
Match: LZTL1 (Leucine zipper transcription factor-like protein 1 OS=Homo sapiens GN=LZTFL1 PE=1 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.349e-72 Identity = 132/308 (42.86%), Postives = 205/308 (66.56%), Query Frame = 2
Query: 86 MSGMGLNDHHEEEVKKFLKFARYNRQQQLRSVEGSFQDLKDSRLQEDTFTSDEVQEMIDGLMVVVKGAVETELLNAAHTNVLLLFQLFSQAERWHLKLQADISELENQKLLKDIADFEEQEASGRRNKNLDLSNLAKSKLEPLNEGGSAALLQMEISRLKEENDTLKRKITTLEKSTNSSLSTQSRLRADLEEAQNNLSSSSPRKDGSEREML-SDKISSLSDTLREAELNYNKKFS-------SVNEELVEAKHYILNLQHELETLHGEFDKKFSETTQFKNLKKMLEGKNTQLKELRVRVKKYEPD 985
M+ +GLN+HH+ EV +++FAR R +L++V+ FQDLK+SRL EDTFT DEV E+++GL VV VE+EL+N A+TNVLLL QLF+QAE+W+LKLQ DISELEN++LL+ +A+FE+ E + K + ++ K KL PLNEGG+A LL EI RL+EEN+ LK ++ T+E ++L +S+L L++ Q + G++++ + + +S+L +T+ + + K + S+ E L AKH +L +Q +L E +KKF +T ++N+K++L KN Q+K+LR R+ +YEP+
Sbjct: 1 MAELGLNEHHQNEVINYMRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNGLQAVVHSEVESELINTAYTNVLLLRQLFAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSSNKK--PILDVTKPKLAPLNEGGTAELLNKEILRLQEENEKLKSRLKTIEIQATNALDEKSKLEKALQDLQLD--------QGNQKDFIKAQDLSNLENTVAALKSEFQKTLNDKTENQKSLEENLATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEPE 298 The following BLAST results are available for this feature:
BLAST of TCONS_00071067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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