TCONS_00071066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071066
Unique NameTCONS_00071066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071066 ID=TCONS_00071066|Name=TCONS_00071066|organism=Clytia hemisphaerica|type=transcript|length=1566bp
aaaaatgtttcataaaATATTTAGACGAATAAGATTTAAACATTTGAACT
GAAAGCAATAAAGGAAATTGGGCACTGTGGAAAATGCGAAGTTGACATTT
TGGCCTGTGTTTCTCTTTCTTCATTGTTTATGTTTGTTTTGGAATATGGT
TGCAGGAAGGCTAGAATATGTTATGGAATTTTGTTCAGCATCTGAAAGAC
AGGTTTTGACAGATTTCATTCAAGTTCAAATGAAGgAAATCAGTCGTCTA
AAGGAAGAAAACGACACTTTGAAGAGGAAAATCACTACTTTGGAAAAATC
GACAAACTCGTCTCTGTCAACTCAATCAAGGTTACGAGCGGATCTAGAAG
AAGCTCAAAATAATCTATCCTCCTCCTCGCCCAGAAAGGATGGCAGCGAG
AGAGAAATGCTTTCTGACAAAATATCTTCACTGAGCGACACTTTGAGAGA
GGCTGAGTTGAATTACAACAAGAAGTTTTCATCGGTTAATGAAGAACTGG
TTGAAGCCAAGcatTACATTTTGAACCTGCAGCACGAATTAGAGACTTTA
CATGGGGAATTCGACAAGAAGTTTTCTGAGACCACTCAATtcaagaattt
gaagaaaatgttaGAAGGGAAGAACACGCAGCTGAAGGAGCTTCGCGTTC
GTGTTAAAAAATATGAACCTGATTGCGAACTGTAGAAAGAAAAGGCTGAC
TTCTCAACCTGGTTGACGTCATACACTCAAAGCGATCAGATGCACATCAA
AAGAGATTAATATAGCAGattgaaaatattaaataaaaattttaaggcAC
ATTAGGCTTTTTTATACTTTGCTGTAAAATTCATACagtttttaaattca
ttttttaattatttatgtATTTCAATTCTCGAAAATCTCGCTCGAGAAAG
ATAGTAGTAGGAAGGCTTGAAAAAAATGTGGctttaaaggcttggggaca
cgagaagtttttttcgcattggtgcaatgcaacatgctccatcccaccaa
cctaaAACGCCTTCTCGTGTCTCCACTCCATTCTTCTAAAATCAGCGtat
cttttgggtatttccctcactttttgtctcatgaaacgaaaaaagaaacc
acgggacacgcactttttttcttgcgtTGGTGGGAtgaagcatgttgcat
tgcaccaacgcgaaaaaaacttctcgtgtacCCAAGTCTTAATGCTTATA
TGCCTTTCGAATTTTTGATGCAAAGCACTACGTTTCCAGCCACAATACTT
TCCCTTGCTATTTTCACGCGATTGATCAAAAGTGATTTGCTTCCAATTTT
GATTTATGTGGAATTTTTTGTTGTTCTTAAAAATATGATGTAtgtaatga
aaatattgaaacctTCCTTCGGTCTTACGGGAAGTTTTGCTTCAGGTGAT
TACATAAGGTAATGTAAATAGATTTTAATTGAAGATAAAAttgtagaaaa
ataaaatacccAGAAGAAAGGAAAAATCGTTTTCTTAATTCTTGTAGAGA
GGACTCCTTTTCTAACCCAAGAAAAGTTTCTCTAATTATTTTTCGACATT
TTTCTAAGAATGCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:1460278..1465270-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071066 ID=TCONS_00071066|Name=TCONS_00071066|organism=Clytia hemisphaerica|type=transcript|length=4993bp|location=Sequence derived from alignment at scaffold_58:1460278..1465270- (Clytia hemisphaerica)
AAAAATGTTTCATAAAATATTTAGACGAATAAGATTTAAACATTTGAACT
GAAAGCAATAAAGGAAATTGGGCACTGTGGAAAATGCGAAGTTGACATTT
TGGCCTGTGTTTCTCTTTCTTCATTGTTTATGTTTGTTTTGGAATATGGT
TGCAGGAAGGCTAGAATATGTTATGGAATTTTGTTCAGCATCTGAAAGAC
AGGTTTTGACAGATTTCATTCAAGTTCAAATGAAGGTACATGGATATACC
CCCATATTGAGTGTTCTTTTTTCCTTTGAAAAGATGAACTAGCAATGGAA
TTGAAAAGACAATGCAACACCCCTTTTCCACAGACCCGGTAGGATTTTTC
AGCCAATGGGGATAAAAATAACGGACTGAAACTCGATGGAGAGTGATATT
CCCATATATTTTATGGCTGGCTATTTTAAAATTCCTTTGTTTTCAAGTCA
GAAATTCAGCGGGAATGGGAAAAAAAGTAGATATTTTGTAGTGAGGATTG
ATTTATTTGATTATTTTACAGTGGACAAAAATTTTTCACCGCGACGATAT
TTTGGCCAATTTTTCCAGTGGGAAGGGGTCCTAGTGGGTCTGTTACAAGG
CGGTGTAATGCAGAAATTTGCCTCGTAAAAATTCTTCCTTTCGAGGTTTT
CATTGCAGACTAGAGAATGCTCTAAAGTAAAAAAATTTTAAAAATCCACT
TTCAAAAAAAATGTAATTGCTGTCATTTCACCAATTCTGACTTTTCATCG
AGGTCATCACTTTCAAATTGTTTCTTTTCTTTAGTGGGGCTAACCCAATG
AGTTCGGTAAATAGGTGGAATGGGAAGAGGTGTTTTCTGTTATCTGTGGT
TACATCGATTTTGAAAACGAAGATTTCGATAGAAATTCCCCACCTTTTTC
AAGTAAGAAAAAATGAAGCCGCTTTTGGGATGACGGATTGATTATAGCGC
TTTCTTTGTTGTTTTTTTCACTTTGCACATTTTTTATGGCAATATATTTT
ACTTTCAACCCGGCTTTTGTGTAAAAACTACACGGGACACGCGTTTTTAG
ATGGGAAATATAAGAGGCTTCATCATCCAATAGTCTCATCTCTAGCTCTT
TTGGGGCTTAAAACTCAATGGGTGATTATCATCGGCTATCATATTGATTT
CGATATTCTTTTTATTATTTCAGGAAATCAGTCGTCTAAAGGAAGAAAAC
GACACTTTGAAGAGGAAAATCACTACTTTGGAAAAATCGGTACTTTTTAC
TTTAAACGAACTAATTTTCTAAAAAAAATCCAAAAAATCGCATTTCGTGG
GAAACTTTTTCGTGGTTTTGCCTCATTTCGGACACATTTCTTTCATTTTC
TAAGGGATTTTTTTAATTTTTGGTTAAAAATATTCGGGCTCTAACATTCG
TGGTTACGCCAGAAAAATCGCGAAAAAAAGCAAAAATTAGTTCCCTTAAG
GTATGGATAGTTTGCTATCTCAATAGCATCAACCCATTCTCCCGTTTAGA
ATTGTATTATTTCCGAAGGAAACCTATTTCCATTGAAACATTTTTTCAGT
ACAAGATAGTAAAGTTGTTTATTAAGGCGAACCATGAAATGAATACGCAA
CGAATTACGTTTTCAACATTCTTTTTCAGACAAACTCGTCTCTGTCAACT
CAATCAAGGTTACGAGCGGATCTAGAAGAAGCTCAAAATAATCTATCCTC
CTCCTCGCCCAGAAAGGTTTTTCTTGGCTTTCACTCTCATTAGTAAAAAA
ATACACAACCTTTATTTTATGTTGAAAATTCAATTTTACCAGGTTGAATT
GGGAGGGCTCTTTATTCATATCAAAGCTTCTTAACGTGTGATTTCAACTT
AGCTTAGGGTTAGCTTAGATTAGATTTTAACTTAGTTATTTTATTGTTAC
CTCTAAGGATTTGTTCTAATTTTGAACGTAAACTCGAATATTTAGTTAAA
ATGCACTTCTCAAGTTTCTTTCCGTTTTCAAAGAACGCCTGTTGATTTCT
TACACGTGTAGTTTTTTCAGATGAAATTAATTGTTGGTTTGTTGGGTGAA
AAGCTCAAACCAATCAAAATCATATAAAAGAAAATGTTTGTTTTCGTTTT
TCAGGATGGCAGCGAGAGAGAAATGCTTTCTGACAAAATATCTTCACTGA
GCGACACTTTGAGAGAGGTAAAATTGGTTTATTGCTCAAGATTCAGTAAT
ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGGGAGTGGGGTGGGTGGAAAAAGTCTCAAAAATTAATAAACGGGGGGAG
GGGGCTGAAATAAGAATGTCCTGGGTAGAAAATTTAGTACATAGTGTATT
CCTGTTCTTACAATATGATCTTTCGAATGTTTTAACATATAAACCTCTTC
GAAATTTTATGATATTAGATTTCGAAAAAGAGAAAATAAGGTTAGGTGTG
AGGTAGGAATCGAAGGAGCCAGAAGCGAAGGGTCATTCTTTCTAACTTCG
CAATCCTTATTCCAGGCTGAGTTGAATTACAACAAGAAGTTTTCATCGGT
TAATGAAGAACTGGTTGAAGCCAAGGTATTCATTATTTCATGTTATTAAA
TGGCGTCCCATGTTTTCAAGCAGTGTCTGTCCTTCTACTTGACTTGTAAT
ATGCCGGTTGTCGGAAAGCACCACGGCTCTCAGAATGTCGTTTATATAAA
TAGAAGAATATCTCCTCGAGTTTTTGAAAAAATATTTGTATCACTGATGA
TACTGACCTTGCGACTTTTTTACTGAAGAGGAGGCCTCATTGAAACTTCA
ATCAATTTTTCTTTTTCAGCATTACATTTTGAACCTGCAGCACGAATTAG
AGACTTTACATGGGGTAAGGAATGATTGTAAATTTCAAATGATTTTATTT
AGCCTTGGTTTGAACTCACTCGTTGTATCTATAGACCTAGACGTAACGAA
CATCACTTGCCTCGTTTTGAAATTTCCATGGGGATTAACTCCCAGCGGAT
TTTATTAAAACTACTTCCTATTCATAAAAAAATAATTTAATGTCTTAAGA
GACATAATCACCATGGTTATTGTTTGAATACGAGGCGAGTGATATTCATG
ACGTATTTTATGAAAAGGACTATTGTGTAGACCCTGCCCCACTTGAAAAT
TAGGTAAAACTTTCGTCCCGGTGGCAAATGTGCCCCACAAGTTTAGTCCT
ACTGGGAAATTTACTTTTTTTATCCCCAAACTGAAATTCAACGGAAAAAA
ATTACACTCCAAAACCTTCAACATTGGACTTTTTGAACTGGGAACAATAA
AATTTATATCTTCATCTGGATTTCAATAAAATAATTTCACCCCCAATGTG
GGGGAAAAGTTCCACCGGGGTGTGAGACAGGGGTGTATCATGCTTCTTCA
CGATTCTTAGTTTGGTGTAAAGGGATGTCATAACGCTATTTGACTCACTT
TTATACCTTAGGAATTTTGTAGCAACATTAAATTCAATACTTTAGGAATT
CGACAAGAAGTTTTCTGAGACCACTCAATTCAAGAATTTGAAGAAAATGT
TAGAAGGGAAGAACACGCAGCTGAAGGAGCTTCGCGTTCGTGTTAAAAAG
TAAGCGTTATAAGATACATATGTATAATTGAGCAAATCCCCGAAAATTAG
GATAACTCATTTTTCGAAAAGAAATGTTTATTATTGTTGTGGAGATAAAT
AAGGTTTTTGATACTCAAGGGTCTTGATTGAGATTGTAGAGCATACAACA
TTACTTCGATCAAACGCCCCGGGCGTTTATAATTTGTTTTTTTTTAGTTT
TTAAATTTTTCCTTCAAGAAGAGGCTTTTATTCGAGGGGTGTTTAAAAGA
AGAGGGCGTTTATTCGAAGTAATACGGTAAATGAAGATGACTCGATAAAG
GATATTTCACTAAATCTTTTATCAGACCTGGCAGCTTTGAATTTTTCTCT
TCTGATTCTTGTCTTCATTTCACTTTGTTTTCTCTAGATATGAACCTGAT
TGCGAACTGTAGAAAGAAAAGGCTGACTTCTCAACCTGGTTGACGTCATA
CACTCAAAGCGATCAGATGCACATCAAAAGAGATTAATATAGCAGATTGA
AAATATTAAATAAAAATTTTAAGGCACATTAGGCTTTTTTATACTTTGCT
GTAAAATTCATACAGTTTTTAAATTCATTTTTTAATTATTTATGTATTTC
AATTCTCGAAAATCTCGCTCGAGAAAGATAGTAGTAGGAAGGCTTGAAAA
AAATGTGGCTTTAAAGGCTTGGGGACACGAGAAGTTTTTTTCGCATTGGT
GCAATGCAACATGCTCCATCCCACCAACCTAAAACGCCTTCTCGTGTCTC
CACTCCATTCTTCTAAAATCAGCGTATCTTTTGGGTATTTCCCTCACTTT
TTGTCTCATGAAACGAAAAAAGAAACCACGGGACACGCACTTTTTTTCTT
GCGTTGGTGGGATGAAGCATGTTGCATTGCACCAACGCGAAAAAAACTTC
TCGTGTACCCAAGTCTTAATGCTTATATGCCTTTCGAATTTTTGATGCAA
AGCACTACGTTTCCAGCCACAATACTTTCCCTTGCTATTTTCACGCGATT
GATCAAAAGTGATTTGCTTCCAATTTTGATTTATGTGGAATTTTTTGTTG
TTCTTAAAAATATGATGTATGTAATGAAAATATTGAAACCTTCCTTCGGT
CTTACGGGAAGTTTTGCTTCAGGTGATTACATAAGGTAATGTAAATAGAT
TTTAATTGAAGATAAAATTGTAGAAAAATAAAATACCCAGAAGAAAGGAA
AAATCGTTTTCTTAATTCTTGTAGAGAGGACTCCTTTTCTAACCCAAGAA
AAGTTTCTCTAATTATTTTTCGACATTTTTCTAAGAATGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044150XLOC_044150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071066-exon-scaffold_58-1575043694:1465036..1465270TCONS_00071066-exon-scaffold_58-1575043694:1465036..1465270Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1464032..1464097TCONS_00071066-exon-scaffold_58-1575043694:1464032..1464097Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1463555..1463641TCONS_00071066-exon-scaffold_58-1575043694:1463555..1463641Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1463104..1463166TCONS_00071066-exon-scaffold_58-1575043694:1463104..1463166Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1462596..1462655TCONS_00071066-exon-scaffold_58-1575043694:1462596..1462655Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1462307..1462351TCONS_00071066-exon-scaffold_58-1575043694:1462307..1462351Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1461572..1461675TCONS_00071066-exon-scaffold_58-1575043694:1461572..1461675Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1575043694:1460278..1461183TCONS_00071066-exon-scaffold_58-1575043694:1460278..1461183Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1465036..1465270TCONS_00071066-exon-scaffold_58-1510915933:1465036..1465270Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1464032..1464097TCONS_00071066-exon-scaffold_58-1510915933:1464032..1464097Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1463555..1463641TCONS_00071066-exon-scaffold_58-1510915933:1463555..1463641Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1463104..1463166TCONS_00071066-exon-scaffold_58-1510915933:1463104..1463166Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1462596..1462655TCONS_00071066-exon-scaffold_58-1510915933:1462596..1462655Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1462307..1462351TCONS_00071066-exon-scaffold_58-1510915933:1462307..1462351Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1461572..1461675TCONS_00071066-exon-scaffold_58-1510915933:1461572..1461675Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1510915933:1460278..1461183TCONS_00071066-exon-scaffold_58-1510915933:1460278..1461183Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1465036..1465270TCONS_00071066-exon-scaffold_58-1491911889:1465036..1465270Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1464032..1464097TCONS_00071066-exon-scaffold_58-1491911889:1464032..1464097Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1463555..1463641TCONS_00071066-exon-scaffold_58-1491911889:1463555..1463641Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1463104..1463166TCONS_00071066-exon-scaffold_58-1491911889:1463104..1463166Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1462596..1462655TCONS_00071066-exon-scaffold_58-1491911889:1462596..1462655Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1462307..1462351TCONS_00071066-exon-scaffold_58-1491911889:1462307..1462351Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1461572..1461675TCONS_00071066-exon-scaffold_58-1491911889:1461572..1461675Clytia hemisphaericaexon
TCONS_00071066-exon-scaffold_58-1491911889:1460278..1461183TCONS_00071066-exon-scaffold_58-1491911889:1460278..1461183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1460278..1465270 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.375134	0.467659	1.05295	1.01303	4.13422	1.83026	0.63861	0.95624	1.06208	1.867	0.153186	0.795783	0.43475	0.53136	0.248763	0.337938	1.30915	2.29925	0.104107	0.179912	3.3279	4.36845	0.554564	1.78152	1.73689	2.34814	0.109754	0.277889	0.0939384	0.502667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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