TCONS_00071063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071063
Unique NameTCONS_00071063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071063 ID=TCONS_00071063|Name=TCONS_00071063|organism=Clytia hemisphaerica|type=transcript|length=1404bp
TAGCTGGTAGTTTGTTGAAATGCAATGTGAATGAAACTATAATAAGATGA
GcaATTTGTAACGTCATAAATATGGGAGAGGTTGACAAAATTATACACCC
TATACACCAAACACCGATAGCAAAGCAAGATGGCGGAAGAACTGAGTATG
AGAAAATCCAATTCCTGGGAACAAGTACTGGTATTCTGTGGTTCATGGCA
ACGAGTACAAACTCCAACAATCTGATGTTCTACAAGTTCAATCAGAATTG
TGGCAAGTATGAACTAATCCGAAACCAAACTTTCGATTACGATGCTTCGA
CTGACGATTGCATGGTATTGTGGAGAGACAACAGTATTATGGTGCTTAAT
AAAACAACTCAGCCTATTCAAATCAGTTGTAGTTCAATCACAAAGGATTT
CCAGACATTTCAAACAGAAGTCATCCAGTTACCGAAACTCTACAAAGGAG
CGAACAGCCATTTACCAGTGTGGAGTGTTTCATATGATGAAAAGATGTTG
GTCGTTGTAGAGCAAGTGGACTTTACCTTAGACTATGAACACATTGGATA
CATTCTTCACTTAGTGAAGATAGGGTCTTCGGTCAATggtaaaaaagttt
tgaataagGATAACATTGAAACGAGGCCGATCTCGTTTTCAAAACTACGT
CGTGTAGGATGTGGTCAACACGAGGCTGGGAAACCTTTCCTTGACTGTCA
CGTGATCAATAATGGGGACGAGGTGCTCATTGTTCAATCATCGCACGTGC
AAACATACAGTGGAAACCAAGTCTTATGTAATTTCATTTATTATTCCATT
AAAGATGCCAAAGTAATCACATCCTTACAACGGCCTTGTAGCGCCGTATA
CCGGTATTTGGTGAGCAAATCCGACCCAAGGTTCGCTTCTGATTTGCTGT
TTAGAGTATTACCGATCCAACAACTCGAAATATTCCAAATAACTCCTGAC
CTTTTCGGTACAGGATCAAAATTAATGAAACTAGGCGACTTGGGTTTACC
AACATGGAGCAAGATCATGCATATCGGTGTACAAAACAACCTTTTGGTCA
TCATAATGCACGATATATGTTACGTTGTTCAGCCTCGATATCAAACGAGC
AAGAAAACCGACCAAGTATTGTTCAAACTGAAGCTGAGTGACAAATCTTT
TCAAAACGATCGATATTTACCACGTTTCGACATAGACATTGAttattatc
atgtttttattttcaaagtgaTCCCAAACAGAGAACGAAGTAATTCACTG
GATGTGTTTAGGATCAGAGAATGTAATTCACTGTATGAGACTTGTTGTCA
ATCCAATCGATGTCTGTTCACATTTCGTGAAATTGAAAGTTTGAATTTAC
CAAGAAATGTGAAAAACGATTTATTAGAATGGTGAACTAGAAAGAAGAAC
TCGG
Run BLAST on NCBI

protein sequence of TCONS_00071063-protein

>TCONS_00071063-protein ID=TCONS_00071063-protein|Name=TCONS_00071063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MGEVDKIIHPIHQTPIAKQDGGRTEYEKIQFLGTSTGILWFMATSTNSNN
LMFYKFNQNCGKYELIRNQTFDYDASTDDCMVLWRDNSIMVLNKTTQPIQ
ISCSSITKDFQTFQTEVIQLPKLYKGANSHLPVWSVSYDEKMLVVVEQVD
FTLDYEHIGYILHLVKIGSSVNGKKVLNKDNIETRPISFSKLRRVGCGQH
EAGKPFLDCHVINNGDEVLIVQSSHVQTYSGNQVLCNFIYYSIKDAKVIT
SLQRPCSAVYRYLVSKSDPRFASDLLFRVLPIQQLEIFQITPDLFGTGSK
LMKLGDLGLPTWSKIMHIGVQNNLLVIIMHDICYVVQPRYQTSKKTDQVL
FKLKLSDKSFQNDRYLPRFDIDIDYYHVFIFKVIPNRERSNSLDVFRIRE
CNSLYETCCQSNRCLFTFREIESLNLPRNVKNDLLEW
Run BLAST on NCBI

transcript from alignment at scaffold_58:1419355..1422119-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071063 ID=TCONS_00071063|Name=TCONS_00071063|organism=Clytia hemisphaerica|type=transcript|length=2765bp|location=Sequence derived from alignment at scaffold_58:1419355..1422119- (Clytia hemisphaerica)
TAGCTGGTAGTTTGTTGAAATGCAATGTGAATGAAACTATAATAAGATGA
GGCATACGTTTTTTTCTAAGAACATCCAAAATTTTTAGAAGCCTTCAGAT
GTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCATAAAATGTTCTT
AATTTCACCATTTTTTGAGTTTTTTTATCCATTTTCTTAAGAAATCGGGA
GTCCGCGAAGCCTTATGTTCTTATATAGTTTGTTCTTTTAAAAAAATGTG
TAGCATTTGACTTTGTCAATAGCAAACATCCGGGGAAATTAATTATCATG
CACGAATAAACGTACAGGTGGTCACGGGATATAATATTTTCAAACGAAAA
ATGAAAGTGGCTTTCAGATTAGATGTTACACCAGCAGATACTTTGAGTAG
ATCATTGAGATTGGAGTGAGCAAAACAAATGTTAATTAATTCTGGATACG
GTACAGTTAGTGAAGATATATTGGAAAAAAATTTCAACCTTCAACTTGGT
GCGACATTTTGATTTCTGAAGACTTCCTTATCTAATATTAGTGTTTCGAG
GTCAACTATAAAAGTTTTCCTTTTTTAGCAAGTTGAAAGGTGCAAAAAGT
AATATTTTGATAGCGAAAAGATGAACGCGATACAAGAGAAAAGGGGTTGG
ATGTTAAATAAATACAGTGTTCATCGGTTGGTACATTTTGTGAGCAGTTT
GGACGGTTATGACCAACGTCTTTCACTCATTTGTATGCTCTAATACACCC
TTTTTTATAAGAACCAGTAAATTTGTGTTCAAGCCCTGTTGTTCTTATTT
TTTGACACTCTATTGTTAAGGTAAAATTGAGGTATTTTAGATTTTTCTGC
TTTGATTCTTAAATTGTTTTAAACTCAGAAAATCCATATGCAGTTTTTTT
CTTAGATAGATTGGCCTATTTTCTGCCGTTTTTTGGGCCTCATTGCTAAT
GTAAATTGTTCTTATAAAAAATGAGTGCAAACTAGATTTAATATTCTCTC
TTGGAAGGTGAAAGAACATTGGTTTGAGATCCATGAAATATTTATGAAAA
CATTCAGGAAAAACAATAATTGGCTAGAGAAGAAAAGGAAATTCAAAAGG
AAAACATGTTGAAAATTTTTCCAATATTTTTGAGAGCAGAAAATCTTATA
GGAAATATCGCGATTATTTTCAAATGTGAAGAGTTTATAAATCTTATTTA
ACGGAGACACAAAGAAAAAGGAGTCAAGAGGTGTGGACTACCTTTTATCA
CAGCTAGTTTATCAGATTTTATGACAGTTATGAGAAGGAAGAAACCTGGT
GGTAATGTGATATGACTAAAGAAGAATCTCAAAGAGCCATTAGATGATAT
TCCACTGCAAGGGTTAAATGCTTGGAGAGCCATATTAACGATTTTCTTTC
TTTTTCTTTTAGCAATTTGTAACGTCATAAATATGGGAGAGGTTGACAAA
ATTATACACCCTATACACCAAACACCGATAGCAAAGCAAGATGGCGGAAG
AACTGAGTATGAGAAAATCCAATTCCTGGGAACAAGTACTGGTATTCTGT
GGTTCATGGCAACGAGTACAAACTCCAACAATCTGATGTTCTACAAGTTC
AATCAGAATTGTGGCAAGTATGAACTAATCCGAAACCAAACTTTCGATTA
CGATGCTTCGACTGACGATTGCATGGTATTGTGGAGAGACAACAGTATTA
TGGTGCTTAATAAAACAACTCAGCCTATTCAAATCAGTTGTAGTTCAATC
ACAAAGGATTTCCAGACATTTCAAACAGAAGTCATCCAGTTACCGAAACT
CTACAAAGGAGCGAACAGCCATTTACCAGTGTGGAGTGTTTCATATGATG
AAAAGATGTTGGTCGTTGTAGAGCAAGTGGACTTTACCTTAGACTATGAA
CACATTGGATACATTCTTCACTTAGTGAAGATAGGGTCTTCGGTCAATGG
TAAAAAAGTTTTGAATAAGGATAACATTGAAACGAGGCCGATCTCGTTTT
CAAAACTACGTCGTGTAGGATGTGGTCAACACGAGGCTGGGAAACCTTTC
CTTGACTGTCACGTGATCAATAATGGGGACGAGGTGCTCATTGTTCAATC
ATCGCACGTGCAAACATACAGTGGAAACCAAGTCTTATGTAATTTCATTT
ATTATTCCATTAAAGATGCCAAAGTAATCACATCCTTACAACGGCCTTGT
AGCGCCGTATACCGGTATTTGGTGAGCAAATCCGACCCAAGGTTCGCTTC
TGATTTGCTGTTTAGAGTATTACCGATCCAACAACTCGAAATATTCCAAA
TAACTCCTGACCTTTTCGGTACAGGATCAAAATTAATGAAACTAGGCGAC
TTGGGTTTACCAACATGGAGCAAGATCATGCATATCGGTGTACAAAACAA
CCTTTTGGTCATCATAATGCACGATATATGTTACGTTGTTCAGCCTCGAT
ATCAAACGAGCAAGAAAACCGACCAAGTATTGTTCAAACTGAAGCTGAGT
GACAAATCTTTTCAAAACGATCGATATTTACCACGTTTCGACATAGACAT
TGATTATTATCATGTTTTTATTTTCAAAGTGATCCCAAACAGAGAACGAA
GTAATTCACTGGATGTGTTTAGGATCAGAGAATGTAATTCACTGTATGAG
ACTTGTTGTCAATCCAATCGATGTCTGTTCACATTTCGTGAAATTGAAAG
TTTGAATTTACCAAGAAATGTGAAAAACGATTTATTAGAATGGTGAACTA
GAAAGAAGAACTCGG

Coding sequence (CDS) from alignment at scaffold_58:1419355..1422119-

>TCONS_00071063 ID=TCONS_00071063|Name=TCONS_00071063|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_58:1419355..1422119- (Clytia hemisphaerica)
ATGGGAGAGGTTGACAAAATTATACACCCTATACACCAAACACCGATAGC
AAAGCAAGATGGCGGAAGAACTGAGTATGAGAAAATCCAATTCCTGGGAA
CAAGTACTGGTATTCTGTGGTTCATGGCAACGAGTACAAACTCCAACAAT
CTGATGTTCTACAAGTTCAATCAGAATTGTGGCAAGTATGAACTAATCCG
AAACCAAACTTTCGATTACGATGCTTCGACTGACGATTGCATGGTATTGT
GGAGAGACAACAGTATTATGGTGCTTAATAAAACAACTCAGCCTATTCAA
ATCAGTTGTAGTTCAATCACAAAGGATTTCCAGACATTTCAAACAGAAGT
CATCCAGTTACCGAAACTCTACAAAGGAGCGAACAGCCATTTACCAGTGT
GGAGTGTTTCATATGATGAAAAGATGTTGGTCGTTGTAGAGCAAGTGGAC
TTTACCTTAGACTATGAACACATTGGATACATTCTTCACTTAGTGAAGAT
AGGGTCTTCGGTCAATGGTAAAAAAGTTTTGAATAAGGATAACATTGAAA
CGAGGCCGATCTCGTTTTCAAAACTACGTCGTGTAGGATGTGGTCAACAC
GAGGCTGGGAAACCTTTCCTTGACTGTCACGTGATCAATAATGGGGACGA
GGTGCTCATTGTTCAATCATCGCACGTGCAAACATACAGTGGAAACCAAG
TCTTATGTAATTTCATTTATTATTCCATTAAAGATGCCAAAGTAATCACA
TCCTTACAACGGCCTTGTAGCGCCGTATACCGGTATTTGGTGAGCAAATC
CGACCCAAGGTTCGCTTCTGATTTGCTGTTTAGAGTATTACCGATCCAAC
AACTCGAAATATTCCAAATAACTCCTGACCTTTTCGGTACAGGATCAAAA
TTAATGAAACTAGGCGACTTGGGTTTACCAACATGGAGCAAGATCATGCA
TATCGGTGTACAAAACAACCTTTTGGTCATCATAATGCACGATATATGTT
ACGTTGTTCAGCCTCGATATCAAACGAGCAAGAAAACCGACCAAGTATTG
TTCAAACTGAAGCTGAGTGACAAATCTTTTCAAAACGATCGATATTTACC
ACGTTTCGACATAGACATTGATTATTATCATGTTTTTATTTTCAAAGTGA
TCCCAAACAGAGAACGAAGTAATTCACTGGATGTGTTTAGGATCAGAGAA
TGTAATTCACTGTATGAGACTTGTTGTCAATCCAATCGATGTCTGTTCAC
ATTTCGTGAAATTGAAAGTTTGAATTTACCAAGAAATGTGAAAAACGATT
TATTAGAATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044148XLOC_044148Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071063-proteinTCONS_00071063-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071063-exon-scaffold_58-1575043694:1422069..1422119TCONS_00071063-exon-scaffold_58-1575043694:1422069..1422119Clytia hemisphaericaexon
TCONS_00071063-exon-scaffold_58-1575043694:1419355..1420707TCONS_00071063-exon-scaffold_58-1575043694:1419355..1420707Clytia hemisphaericaexon
TCONS_00071063-exon-scaffold_58-1510915933:1422069..1422119TCONS_00071063-exon-scaffold_58-1510915933:1422069..1422119Clytia hemisphaericaexon
TCONS_00071063-exon-scaffold_58-1510915933:1419355..1420707TCONS_00071063-exon-scaffold_58-1510915933:1419355..1420707Clytia hemisphaericaexon
TCONS_00071063-exon-scaffold_58-1491911889:1422069..1422119TCONS_00071063-exon-scaffold_58-1491911889:1422069..1422119Clytia hemisphaericaexon
TCONS_00071063-exon-scaffold_58-1491911889:1419355..1420707TCONS_00071063-exon-scaffold_58-1491911889:1419355..1420707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1419355..1422119 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267196	0.28951	0.97483	0.855058	0.560512	0.696024	7.40483	6.68218	7.65548	4.36941	4.00043	5.31877	2.58658	2.62467	0.590034	0.995023	0.936055	1.14217	4.35521	5.68026	2.23895	1.76413	0.612724	1.08316	0.765005	1.19481	0.610632	0.434455	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top