TCONS_00071062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071062
Unique NameTCONS_00071062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071062 ID=TCONS_00071062|Name=TCONS_00071062|organism=Clytia hemisphaerica|type=transcript|length=644bp
gtggaggTTGCGAAACTtagtaaaacatcaaaaacttATATATCCTGCAT
ACACAGATAACAGTTGACAGACAATACTAATTAATAAACACCTTCTTCTC
GTTATAGTACGATAAGAAGCACGTGGACCGTCTATCGGCACGTCTCATCA
ACGGCGTTATGGGTCAAGTTGATCACGTGGTTCGAAACGGGGATCCTGAA
ATGTCGTATCCGGGCTGCGTTAATTTGTCTTTCTCGTGTATCGAAGGTGA
AAGTTTGTTGATGGCGCTTAAGGATATCGCTCTCTCCTCTGGAAGCGCGT
GCACATCGGCATCATTGGAACCGTCGTATGTTTTAAGAGCTCTTGGTGCT
GACGATGAAATGGCACACTCTTCTATCAGATTCGGTATTGGTCGATTTAC
CACCGAGGCTGAAGTCGATTACACCATTGAAAAACTTGTTCAGAATGTCA
ATAGACTGCGTGAAATGAGtcCACTTTGGGAGATGATCCAAGAAGGAATT
GATTTGAAATCCATCGAATGGACCCAACATTAAGAGTGTGGTCAAACTTA
CTCAAGGTGATACAAACTGTATATAATTATGAATTAATCATGGATGCCGA
TTGGTCTAGAAGTAGTAATGACGTAATGTAATGTAAGAAAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00071062-protein

>TCONS_00071062-protein ID=TCONS_00071062-protein|Name=TCONS_00071062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MGQVDHVVRNGDPEMSYPGCVNLSFSCIEGESLLMALKDIALSSGSACTS
ASLEPSYVLRALGADDEMAHSSIRFGIGRFTTEAEVDYTIEKLVQNVNRL
REMSPLWEMIQEGIDLKSIEWTQH
Run BLAST on NCBI

transcript from alignment at scaffold_58:1408438..1410465-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071062 ID=TCONS_00071062|Name=TCONS_00071062|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at scaffold_58:1408438..1410465- (Clytia hemisphaerica)
GTGGAGGTTGCGAAACTTAGTAAAACATCAAAAACTTATATATCCTGCAT
ACACAGATAACAGTTGACAGACAATACTAATTAATAAACACCTTCTTCTC
GTTATAGTACGATAAGAAGCACGTGGACCGTCTATCGGCACGTCTCATCA
ACGGCGTTATGGGTCAAGTTGATCACGTGGTTCGAAACGGGGATCCTGAA
ATGTCGTATCCGGGCTGCGTTAATTTGTCTTTCTCGTGTATCGAAGGTGA
AAGTTTGTTGATGGCGCTTAAGGATATCGCTCTCTCCTCTGGAAGGTGTG
TTACTTTCTCTTTCAGTCTCTTTACTTCTGGTAAACGTTAGGTATACCCA
AAGTTACTCTCGTCAACATTTCAAAACTACAATGAAGAGCTCATCTTTTC
CCTAGTAGTAAAAGTTCCTTAAGTGAGGAAATTTTTGTGGATTTTGATTT
CGCGGTTTTTCGACAAATCCGCAAAATACGAATATTCTCATGATTAAAAA
AATCACCAATAAAATTGGTCTTTTTAGGGTAAAATAGGACATAGTTTAAA
CAAAACATCCTCTCAACCACGAAATTAAATTCCGCGAAACTTCCGAATTT
TAAGCTGTAAACCGCCACAATTTTTTCCCTTAAGATACACTCTAAATGTG
ACAATCTCGCTTTATTTTTGAGCTGAAGGAAAGAAAATAAGACTCATTCA
TTGAGATTGCTGTGATATGTAATCTCCATTGCCAGTGGCAAAAGGCTCCT
TCATTTTTGTTACACTGGCTTATGTTCTATTCTAATGCTTTTAAGTTTAC
AGTGTTTTAACACCGTTAAATGTCTTATTTGATACTCCTTATTTCTGCTT
ATTCATGTGTTTTAACACTTTTAATCAGTTTTTTTAGCAGAACGTTAACT
TGGTAACGTATTGACATACTTTATACCTTAAATTATTCTTTTACTTTTGA
ACACAAACTTGTCTCAGCGGTTCCTTTTAATAACTTAGTGTTCAGCTGCG
CAATATTCTCTGTTTTGCCGTTACTTCATTCGTATCTCAAGTCTTACTTT
CTCTGTTACACAGCGCGTGCACATCGGCATCATTGGAACCGTCGTATGTT
TTAAGAGCTCTTGGTGCTGACGATGAAATGGCACACTCTTCTATCAGGTC
AGTTTTTTCATCCAATTTATTGTTGATAAAGTTTTTCATCTGTAGTGCTG
GTATCATCTCTTGGTTTTGTAGAGTCTGATATCCAATATTTCCCAAAGTC
AAACTTTCGTCGTGGGATTTGTTTTTTCACCTAAGATACCGACAGCTTTA
TAGATGGTTGGCCCTATCTCCGTGAAATTTAAATGAATTATGAAACTATT
CCTTTACGTTAGATTCGGTATTGGTCGATTTACCACCGAGGCTGAAGTCG
ATTACACCATTGAAAAACTTGTTCAGAATGTCAATAGACTGCGTGAAATG
AGGTAAAGGTTCATTGTAATTTCAACCATCGAAAACGAATAGTTGTAGAA
AGTTCTTCGAACCTTTTTTCAGAATTTCGATGTCACTTTATTAATTTTAA
GTATATATTCTGACTTTTTGGAACTTAAGTAGACAATGATATATTTTTGC
GAAAATTTTGGCAAAAATAATAGGTAAGCTTCGTTTTGCGAACTTCAGTG
GCACTCTCCGTTATTAGAAGGGAAGTTTCTTTTTTCCCAGGCAAGAAGAG
GCTACGCCTCAGGATTTGCACCGAGTTTCGGGGAATGAATTGAATCTAGC
ACTTGCCTTGTTTTTCGTGTTAGCCTAAGGCTAATGTTTACGGTATGGAT
GGACGCATTTGGATCAAGTTTTGTTGTCAAAATTTTTTTTCTTTTCTTTT
AAGTCCACTTTGGGAGATGATCCAAGAAGGAATTGATTTGAAATCCATCG
AATGGACCCAACATTAAGAGTGTGGTCAAACTTACTCAAGGTGATACAAA
CTGTATATAATTATGAATTAATCATGGATGCCGATTGGTCTAGAAGTAGT
AATGACGTAATGTAATGTAAGAAAAAAA

Coding sequence (CDS) from alignment at scaffold_58:1408438..1410465-

>TCONS_00071062 ID=TCONS_00071062|Name=TCONS_00071062|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at scaffold_58:1408438..1410465- (Clytia hemisphaerica)
TCCACTTTGGGAGATGATCCAAGAAGGAATTGATTTGAAATCCATCGAAT
GGACCCAACATTAAATTCGGTATTGGTCGATTTACCACCGAGGCTGAAGT
CGATTACACCATTGAAAAACTTGTTCAGAATGTCAATAGACTGCGTGAAA
TGAGCGCGTGCACATCGGCATCATTGGAACCGTCGTATGTTTTAAGAGCT
CTTGGTGCTGACGATGAAATGGCACACTCTTCTATCAGATGGGTCAAGTT
GATCACGTGGTTCGAAACGGGGATCCTGAAATGTCGTATCCGGGCTGCGT
TAATTTGTCTTTCTCGTGTATCGAAGGTGAAAGTTTGTTGATGGCGCTTA
AGGATATCGCTCTCTCCTCTGGAAGTCCACTTTGGGAGATGATCCAAGAA
GGAATTGATTTGAAATCCATCGAATGGACCCAACATTAAATTCGGTATTG
GTCGATTTACCACCGAGGCTGAAGTCGATTACACCATTGAAAAACTTGTT
CAGAATGTCAATAGACTGCGTGAAATGAGCGCGTGCACATCGGCATCATT
GGAACCGTCGTATGTTTTAAGAGCTCTTGGTGCTGACGATGAAATGGCAC
ACTCTTCTATCAGATGGGTCAAGTTGATCACGTGGTTCGAAACGGGGATC
CTGAAATGTCGTATCCGGGCTGCGTTAATTTGTCTTTCTCGTGTATCGAA
GGTGAAAGTTTGTTGATGGCGCTTAAGGATATCGCTCTCTCCTCTGGAAG
TCCACTTTGGGAGATGATCCAAGAAGGAATTGATTTGAAATCCATCGAAT
GGACCCAACATTAAATTCGGTATTGGTCGATTTACCACCGAGGCTGAAGT
CGATTACACCATTGAAAAACTTGTTCAGAATGTCAATAGACTGCGTGAAA
TGAGCGCGTGCACATCGGCATCATTGGAACCGTCGTATGTTTTAAGAGCT
CTTGGTGCTGACGATGAAATGGCACACTCTTCTATCAGATGGGTCAAGTT
GATCACGTGGTTCGAAACGGGGATCCTGAAATGTCGTATCCGGGCTGCGT
TAATTTGTCTTTCTCGTGTATCGAAGGTGAAAGTTTGTTGATGGCGCTTA
AGGATATCGCTCTCTCCTCTGGAAGTCCACTTTGGGAGATGATCCAAGAA
GGAATTGATTTGAAATCCATCGAATGGACCCAACATTAAATTCGGTATTG
GTCGATTTACCACCGAGGCTGAAGTCGATTACACCATTGAAAAACTTGTT
CAGAATGTCAATAGACTGCGTGAAATGAGCGCGTGCACATCGGCATCATT
GGAACCGTCGTATGTTTTAAGAGCTCTTGGTGCTGACGATGAAATGGCAC
ACTCTTCTATCAGATGGGTCAAGTTGATCACGTGGTTCGAAACGGGGATC
CTGAAATGTCGTATCCGGGCTGCGTTAATTTGTCTTTCTCGTGTATCGAA
GGTGAAAGTTTGTTGATGGCGCTTAAGGATATCGCTCTCTCCTCTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044147XLOC_044147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071062-exon-scaffold_58-1575043694:1410171..1410465TCONS_00071062-exon-scaffold_58-1575043694:1410171..1410465Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1575043694:1409319..1409402TCONS_00071062-exon-scaffold_58-1575043694:1409319..1409402Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1575043694:1409014..1409103TCONS_00071062-exon-scaffold_58-1575043694:1409014..1409103Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1575043694:1408438..1408612TCONS_00071062-exon-scaffold_58-1575043694:1408438..1408612Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1510915933:1410171..1410465TCONS_00071062-exon-scaffold_58-1510915933:1410171..1410465Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1510915933:1409319..1409402TCONS_00071062-exon-scaffold_58-1510915933:1409319..1409402Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1510915933:1409014..1409103TCONS_00071062-exon-scaffold_58-1510915933:1409014..1409103Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1510915933:1408438..1408612TCONS_00071062-exon-scaffold_58-1510915933:1408438..1408612Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1491911889:1410171..1410465TCONS_00071062-exon-scaffold_58-1491911889:1410171..1410465Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1491911889:1409319..1409402TCONS_00071062-exon-scaffold_58-1491911889:1409319..1409402Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1491911889:1409014..1409103TCONS_00071062-exon-scaffold_58-1491911889:1409014..1409103Clytia hemisphaericaexon
TCONS_00071062-exon-scaffold_58-1491911889:1408438..1408612TCONS_00071062-exon-scaffold_58-1491911889:1408438..1408612Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071062-proteinTCONS_00071062-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1408438..1410465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
100.275	89.8081	131.986	130.819	29.8406	25.3166	37.3536	42.0136	36.0233	41.4618	59.043	44.7044	35.6297	35.3788	30.0207	44.5447	57.9645	65.3073	21.5371	21.7979	57.471	60.6436	64.6369	57.2532	79.1178	73.1938	41.8994	43.9616	37.746	35.42
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015422PyrdxlP-dep_Trfase_sub2
IPR000192Aminotrans_V_dom
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00071062 vs. Swiss-Prot (Human)
Match: NFS1 (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 2.474e-72
Identity = 104/141 (73.76%), Postives = 123/141 (87.23%), Query Frame = 3 
Query:  108 YDKKHVDRLSARLINGVMGQVDHVVRNGDPEMSYPGCVNLSFSCIEGESLLMALKDIALSSGSACTSASLEPSYVLRALGADDEMAHSSIRFGIGRFTTEAEVDYTIEKLVQNVNRLREMSPLWEMIQEGIDLKSIEWTQH 530
            YD K + +LS RLI  +M  +  VV NGDP+  YPGC+NLSF+ +EGESLLMALKD+ALSSGSACTSASLEPSYVLRA+G D+++AHSSIRFGIGRFTTE EVDYT+EK +Q+V RLREMSPLWEM+Q+GIDLKSI+WTQH
Sbjct:  317 YDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457
The following BLAST results are available for this feature:
BLAST of TCONS_00071062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFS12.474e-7273.76Cysteine desulfurase, mitochondrial OS=Homo sapien... [more]
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