TCONS_00071052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071052
Unique NameTCONS_00071052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071052 ID=TCONS_00071052|Name=TCONS_00071052|organism=Clytia hemisphaerica|type=transcript|length=557bp
AACTGTCTGGCACCGAGATGACTTTTTTTGATCGAGTTCCATTTTTCGAT
GCAGAAGTCAATAAAACAAGTTTCGTTGCAAATCCTTTGgatataaaaac
aagaaaacaacgAGTGGACTTTGAACAAAATGGTGTACTCGATCAGAACT
TTGACGGCGAATACCATATTAAAGAAATGAAGTTCCAAGTACCTCTACCG
AAAAGATATGCGCACACTTCACACGTGGTTAACGATACAATGATTGTCGT
TGGAGGGGTGGATACGAGTGGACAATTTTCAACCAATGAAATTCTACTGA
TTGATCTGATTGGACGCACTTTTAGAGGACTGAAATTTCCGgCATGCAAT
CCCGCCTCGCCACTCATGTTCCATAACCATCAAAGTCTCCTCTTAACACG
AGGGCGTGAGGGGTGTGAAAAAGAAGGGCGGTTGTTGGTGGTTGGCGGGG
GTGgaaattgtttttcatttggAACACATTTCAATCGTTGTGTTGTTTCT
CTTGATTTGAGTGATGAGATCAAACTGACTTGAATttttcattacgtaat
gtttggA
Run BLAST on NCBI

transcript from alignment at scaffold_58:1279832..1285497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071052 ID=TCONS_00071052|Name=TCONS_00071052|organism=Clytia hemisphaerica|type=transcript|length=5666bp|location=Sequence derived from alignment at scaffold_58:1279832..1285497- (Clytia hemisphaerica)
AACTGTCTGGCACCGAGATGACTTTTTTTGATCGAGTTCCATTTTTCGAT
GCAGAAGTCAATAAAACAAGTTTCGTTGCAAATCCTTTGGATATAAAAAC
AAGAAAACAACGAGTGGACTTTGAACAAAATGGTGTACTCGATCAGAACT
TTGTAAGGAAAATTGCTTTTTACGAATGCGATTTTCTCAGTTTCTCTCTT
TCAGAAGAGTCTGTAACAAACTCAGAATGGTATTTTTGGAATAACACTTT
CAGAGAAAGTTATGTTCTACTTGGTGGATCAATGGCCGTGGTGTACTATG
CAGATAATATTTTCAATAGCTCGTTTCTTGATCAATCATATTCAGATCCT
CACCCGACTCAACCGAAATTTTTTTCCACGAAAGTTGTACATTGTATTTT
TCGGGACAGTTCTGTTTCGTTTCAGAATAGTAAACTGTATCAAGTATCAA
AAACACATTTTGAACACTCTAAGGTTGCCATTGGTACTTATCAAGACACA
ATCATTAACATAGAAAGCTGTTCATTCAAGGGATCGGCGTTCGATACACC
ACCTCCAAGCCAGCTGGAACTATATTCAATAAGGTCAAATAACGAAGGGA
AGGCATCGATAAATAATTGCACTTTTGAAAACTCGAACTCCGGTTCCATT
ATCTGCAACGGGTTTAGTATCACCATCACAAATACAACATTTTTGAACAA
TTCGCTAATCGACGATCAAGACTTCGCGACCACCATGGCAGCTGCATTAA
CTATAACGTCATCCATGAGTGTTGACCTTAGTAATTGTACCTTCTCAGAA
AACAGAGCTCCCGCAATTCTCTTCAGCTCAATATACATCGTAATGTCAAA
CAGCATCGATATCTTTTTACGCTTATCTGAGGTGATGGTGGTGTCGTCTA
GTGACCTCAATAGGGAAAGTAACATTTTACTTATCAAAGCAAATAGACAG
GCCGTATTAGAAGATATAGGTATCTTAAACTCGAGCGTATCGTGTTTACC
AAACTATAACATACATGGCATTATGAGGAAATATATAGGGAACAACCGAT
TTTTCGTACGGTTGTCATGCGAAGAATGCGAGGGGACGAAATACAATGTC
AAAAACAAATCACACGTCTCTTGGGATACTTCTGGTGATGCTACAATTCA
CAATGTGACATGCTATCCTTGCCCTTACCAAGCTTCATGCGTAAATGGTA
TTAAAAGTAAAGGTAATTATTGGGGATATGCTGATCATTTAGGATATGTG
GCTTTCGTGCAATGCCCTCCTTTCTATTGCTGTCCTACTTTAAAGAAATG
TGCTTCTTATAACAGCTGTTCGAACAATCGACAAGGAAGACTTTGTGGTG
AATGTAAATACAATCAATCAATCAGCCTCTTTAGTGGTTCACGCAATAGA
TGTGTGGAAGCGTCAACTTGCCAAGAAGGCTGGTGGCTCTGGTTCCTATA
CGCACTCGTCATTATTCTCGCATTGTTAACCGTATTGTATTACAAAGACG
TCTTTAAAGGAATGACATCCATAATCTGTTGTTGCTCCCCCGCACATCCG
TTGGAAGAAATGACTGATTCAGATCCTGAAGAAAACACGCTGGCTTCACC
TCTCTTAATGAGCAGAGAAGTTGAACGACGATCACAAAACCAACAAATAT
CTGTCACATTCTCTGGAGCTGTCAAGATCGCTTTCTTTTTCTACCAGACA
GCTTCTATCATCCGGATCAATGCACCTGCGAAAATGGAATATCGCATGCC
TTATATCATCGAAATTTTAACTTCTTTCTTTAATGTGAAAATAGATATTG
GATCTGCTGATTTGATCGACATTTGTCCACTGCAAACGAAAAATGTTACT
CTAATAGAACTCATCCGATTGAGTGTTATCTTCGGTATGATTCTCTTGGT
GATTGTCGTGATGTTCGTGTTGTACTTGTATCGACGGTACCGAAATATTC
GACACCAGACCTCTTTCTTTGCTGTTAGATTGAAAGTGACCCACATCCAG
TTGTTGGTTATCGGTTATGCCAGCATTGCCACGTTTTGCATCCAATCCGT
GGACTGTATCCATATTGATGGTGAATGGTACATTTTCAACCAAGCTCATT
TGAAGTGTTTCCAAAGCTGGCAGATTGTTATCATCCTTCTCATCGTTTTG
TGGGTGATACCCTTCCCTGTGGTGCTCTATATCGGTTGTAAATTGTTGAG
AACTGGACAGATAACACCGAATCAGTACTTTATTAGTCTGATGTCTCCAC
CCTTACTGCCCGTTTTCATGATCAGAAGCTATTGCATTGACGATCGAGCA
TGGGTAGACCAACAGAAAATGGAGCGAAATAGCATACTTGCGTTTCTTAA
TGAACCTTTCAGAGAGAGTGAAACCAAGGATGGAGGATTGGAGCGAATTA
TTTGGGAACCTGTGTTTATTGTGCGCCGATTGATTCTGGTTGTTACAACC
ACGTTCGTCCGTTCTCCGATCTTAAAACTGTACCCTGCTGGAGTCATGTT
GATTTTATTTACCTTACATGATTATCTTACAAAGCCGTTTGTTAAGCCAA
AACTCAATTTCGTTCAATTGGTATCTATGTTGCTTCTGGTGACTCTTACC
CTTTTCAACATGTTCTGGGCTCTCTCCATAAACGTTGATATTCTGGAGAG
TTTAGAGTATCGTATATTTGGAAAACTTTTACTTATTCTTGAATTGTGTA
TTTTGTTGAGCCCCTTCTTTCTCCTGGTAATGGCTTTTATTGGGAAGATG
GGAAAAGCGTTGTATAAAGCATGTCTCCGGACAAAATTGGACTGAATTTG
TTTATATTCTTTTGTTATGATTAGGAATTTACTTTTTTTTTTAGATTAGA
AATTTTCTATAAAACGCAATAAAATTTGCATCCCCTGCCTACTGGGGAAT
TTTAATTTGTCGGTCAAGGGAATTTCCAAAGGCGAGTTATTTGACCCAAT
GAGATCCAATGCTAATGAAAAATCCAGCTAGGGGTTATGAATTTGCATTA
GATATGAGATTTTACATTAATCTGATCAAAAAAGTGTCTTCTGTCACTTC
TTATACCTTCTTGTATATATAGTATATCGTATGTTAAAAAATTTTGATTC
CCTTTAGATGTAAAAAAATTTATCTAGTATGAACTATAATCGTTGTAATT
TTAGATTTCAATCTCTTTTAAAATTTTCAAGATTTCATGTTTAATTGTTA
ATTCTTCTTTGTATTGAGCTGTTCCATTGAAAATCCATACAAGGATATGC
GCGAACCTTTTCAAGTCAAAGAAATTCTTAGAAATGTGAGGATACCCTCT
GAAAAATGGCAAAATTTGAACGTTGAATGAACGAAAACCTGTCTTTACCC
TCCTGGAAATTTTAGAATAACTTTTTACCCTCCCCCCGGAAAATGAAACA
AACACTCCTTTAGACTCCCTGGAATTTCTTATCACGTTAATCAAAATTTA
TCTGTATGGAATGTCCCAAATCCTTCCCAGCTACCAGAAGCGTATATGCT
GTTCTTAATCACCCTTGCAAAACACTTTTGCCCATGTATGGTTGCATTTC
CCAAGACCACAAGAAACACAGTTATAGAAGTACAGTTAAGGCGGCTCTCT
AGTTCGACGTGCTGTTATTTGATACGCTCAATTACTCAATCATAATATTG
AAAGCCACCATCGACAAAAAACTCTCCTAAAAGACGCTCTGCTATTCGAT
ACGCTCCCTTGTTTGAGGAAATTCCAATTGCCCTTGAAAATCGAATTAGG
AAGAGTCAACTGCAGCTACAGTAAATTCAAATTTTTTCACAGCTACGGTT
CCGGATTAGTAGAAAAAATATTTGCTAACATTTTGGAATGTTATGCTTCC
ATTCAAGCAAAGCTGTTCTTCGTGTTTTTAGGACGGCGAATACCATATTA
AAGAAATGAAGTTCCAAGTACCTCTACCGAAAAGGTATACACCAGTCTGT
TCCTCTAAAGAATCCTACATTGTAACACGCATGCGTAATTTGTCGTTTTT
TAAACCATACGTAGTTAATTCCCGTGATAAACAAAGAGGAATGAATTCAA
GAGGTACAGTCACTTTCGGTCGGGGCTGTGGACGGCGACATTTGTCGTTC
TTTTTGTCTATTTTTAGTAATGCAGGATTCTAATATTAACCCCTCACACT
TTATAATAGAAACAAATAATTCAAACAAAGTGTTGTTGTCTTGATCTGTT
GTTATTTATATTTTACTATATCTAGATGTTTTCACACTAAAACGAGGCTA
AACCTTCGTGTACCCCTCCCTTAGGTCTCGTAAACACCCTAGACAGGCGT
ATTTCACTATGGGGCGAAACTCTTATTTCTAATTTCAGTCCCCCTAAGGG
TTACAAAAAAACTCAAATAAAAAACTCCCAAAACTTCTTTTTTTTCCATC
GATTTTAGACCCCAAAATTTCCGATTTTCAAAAACTGGGCGGCACCACCG
TCATTTTGCAAAGTTAGTTCCCCCCGGGTATACGCTTTTTTTTTTATAAG
AATAGTGTAAATCCATTTCATCATGGATATTCTTAACTTTTTTGGGAAAA
TCATGATTAAATATTCTTGCAGCACATTCTTAGGTTAGGATCCTAATACT
TCATACTAGATTTAACATTTAGTACATACGTCTCAAGCATAAAATGGCAT
TTTTGTAAAAGGAATGAGCCTAACTTGGGGGTAATTGAAAATGCTCTAAA
AATGACATTCTTAGCTCGAGTAGCAAAGTTCCATGATGGTGATATTCTTA
GCATATTCTTAATTTTTTGGCCATTTTCATCATAAACATTCTTATAAATT
CTTATAAAAAAAGCGTGTACCTTAGTACCTTCCACTAACAAGACTGTCAC
GTCACATGTTCCACATTTCATCATTTTATTGTTCTTTTTCATCGTTCGCT
AGATATGCGCACACTTCACACGTGGTTAACGATACAATGATTGTCGTTGG
AGGGGTGGATACGAGTGGACAATTTTCAACCAATGAAATTCTACTGATTG
ATCTGATTGGACGCACTTTTAGAGGACTGAAATTTCCGGTAAGACAGTTT
ATTTATATCCTTCAAAGAAATTTTTCATTCCAATTCAAATTTATTTATTC
CAGCTAAGGCTTTGCATGGCCTTGTAGATTTTCAGGTTAGAAGGCAAATG
TTTCTTCCCGAAACTCTGCTGCTTCAATATTTCAAGATTTTGTGACATTG
CTACCAGCTAATTATCAAGTTAGGTAACACTAACAAGGAAAGGCCCAGTT
CAATTGGAAACAGAAAGCTAAGATAGGAATGTGACGACAGTTTAGCCATT
TATTTTTTAAAGCCGCCCGTTTCTCTTACCGCCCTTTTAACACGCCCTTT
CCATACAGCCGCTGTTTTGGAAGACTTTGATTGTTATGGATCACAACCTT
TAAGCAACTAAAAAGTCTTCCCAAAACGTTCTACTTTTCTTTCTTTATAG
GCATGCAATCCCGCCTCGCCACTCATGTTCCATAACCATCAAAGTCTCCT
CTTAACACGAGGGCGTGAGGGGTGTGAAAAAGAAGGGCGGTTGTTGGTGG
TTGGCGGGGGTGGAAATTGTTTTTCATTTGGAACACATTTCAATCGTTGT
GTTGTTTCTCTTGATTTGAGTGATGAGATCAAACTGACTTGAATTTTTCA
TTACGTAATGTTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044142XLOC_044142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071052-exon-scaffold_58-1575043694:1285346..1285497TCONS_00071052-exon-scaffold_58-1575043694:1285346..1285497Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1575043694:1281564..1281616TCONS_00071052-exon-scaffold_58-1575043694:1281564..1281616Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1575043694:1280460..1280595TCONS_00071052-exon-scaffold_58-1575043694:1280460..1280595Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1575043694:1279832..1280047TCONS_00071052-exon-scaffold_58-1575043694:1279832..1280047Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1510915933:1285346..1285497TCONS_00071052-exon-scaffold_58-1510915933:1285346..1285497Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1510915933:1281564..1281616TCONS_00071052-exon-scaffold_58-1510915933:1281564..1281616Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1510915933:1280460..1280595TCONS_00071052-exon-scaffold_58-1510915933:1280460..1280595Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1510915933:1279832..1280047TCONS_00071052-exon-scaffold_58-1510915933:1279832..1280047Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1491911889:1285346..1285497TCONS_00071052-exon-scaffold_58-1491911889:1285346..1285497Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1491911889:1281564..1281616TCONS_00071052-exon-scaffold_58-1491911889:1281564..1281616Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1491911889:1280460..1280595TCONS_00071052-exon-scaffold_58-1491911889:1280460..1280595Clytia hemisphaericaexon
TCONS_00071052-exon-scaffold_58-1491911889:1279832..1280047TCONS_00071052-exon-scaffold_58-1491911889:1279832..1280047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1279832..1285497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.663222	0.939328	1.15498	4.34793e-08	0.27279	0	0	0.423751	0.939562	0.807266	2.52371	0.809292	0.948181	0.755709	1.3743	1.90193	0.852476	0.461051	0.518035	0.645864	0.53964	3.14842	1.48259	0.105206	0	0.374544	0.538578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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