TCONS_00071013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071013
Unique NameTCONS_00071013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071013 ID=TCONS_00071013|Name=TCONS_00071013|organism=Clytia hemisphaerica|type=transcript|length=3363bp
gaaaaaaaatagaaaattaataaataaacaaaaacacaTTGACGGCCACC
CTTAGAGGTGAAGAACCACAGCTACTATGGACCCATTCAAACAACTTGCC
CTTTTGCAGGCTAAAATGGCCGGCATGAGTAGGGCCCAGATTGAGGAAGC
CATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCAGACC
TTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGCTGCA
GGTGGTTTTTCCTATACTGTTGATAATATAACAAGACTGAAAAGATATCT
GATATTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAgcagaaa
atgttcaaaatattcCAGTTGTTGAAGAACTTTTAAAGGAGGGCAAAGGA
AAGGAGGTGATTGATTTGATCGTTCAATTTGCTCGTGAAGCACGTATCTC
AAAGGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTATCAGG
GAGATGCCATGTATGAAGATAGGACAATACAACGAGCTGCTTATGATAGT
ATTGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGGAGCT
TTGTGAACCATGTTATCAAAATAATTGGAAACCTTCAACCAAGCCAGTCA
GTAAGACGCAACTACGGAAGAAAGCAAAACAAGAGGCAATACAAGCAGCT
CAACAGCAGAACCCAGGGCCTTCCACCTCCACCGAAACCGCAGCCGCTCA
ACCACCGTCAGCAAAAGTGCCAGTTGAAACAtgtgaaattgttgaagagg
gTGAACctcccaagaaaaagaaaaagaagacgaagaagaagaaaaaacca
aAGGAACCCAAACCTCAAACAACGCAAAGGTTCAAAAAATCTTCCAGTTG
GGGANGAAAAAACCAAAGGAACCCAAACCTTCCACAAcgcaaaagttcaa
aaaatctTCAAGTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTT
ACACCGATTCAAATAAAGATGCCAATCGATTGTTATTGTTGATGACAAAG
TACAAACAACGTCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCA
TCCAAAAATGACGGGAGACGAGGAACAAGCTAAAAATATCGTCCTCCAGT
ATTGCACACGTGGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAA
ATCGATGGGAATCAACCAATGGATCCAATCACATCTCAAATATTACAACA
CATAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCG
ATGTGGAGAGATTGTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTG
CCACAAGAATTTGAGGTGGACGCTGCAGGTCAGATGGTACAAGTGGAAAA
CACTCAAcgtaaaaaatgttcttttcaaCTGACCAGGGAGCATTTACCGA
ATGGCTTCCAAAAATTGAAGGAGgtttggGTGGCTCTACTTCAAGACATG
CCCATGACAGCCTTGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCT
CTTTGATGATCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGAGATG
GCTCTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGATTCTGTTAGCA
TCAAAGATGTATGAGCAAGGCCATGGTGATCAAGGCCAAAGCCATCAACC
ACAACAAGAATATCCAACAATGAGTCTTTCTCAACAACTACgacaacaac
gacaacgacaacaacagccacaacaaccacaacaacgaGTACCAACCAAA
GAACCACTTACTTGGATACCAAACGCTGAAATCTCCAAAGCTCTCAATGA
TGCTTTCTACTTAAGTTTCAGGCAACCCGGCAAGAATTCTTCCTTCCGTA
CGGACAAAAAGTTCATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGG
CGTAACTGTGTAGGGTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGC
CCTGGCCATGATTACGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTT
TCGGGCGCACGCTTCAAAATATCGATCATTTATTGAAGAGGGATATGACC
ATCCGTGAAGCCATTCAATTGGGACGCTCTATCAACTTTGGTGCAACAGA
CTGTGCTCTACCAATGGTGCATGCCACGCAGAACAGACTGGATGTGGACG
TTTTCATTGTTTACACTGACTCCGAAACTTGGGTTGGAAAAGTTCATCCT
TCTGAAGCTTTGAAGAATTATCGTCTAAAGATGAACAAACCGGATGCCAA
ACTCATTGTTATGGCAATGCAGGTGAATGATTTCACGATTGCCGATCCAC
TTGATCGCGGTATGTTTGACGTTTGCGGATTCGACTCTAACGTACCTGAT
ATGATCTGCGAGATCGCCAGAGGAAATATGTCTTAAAATCACCAAACAAA
GAGAAACGAAATCTAAACCTTTCTGGTTAGCCTTTGTTTACATGGCTCTA
GCTGCTGGTGATTTGGTGCTGGTGGTCTTAACATTCATATCGGGAAAAAT
GGAATTGATACATTATCAACCAGCGCAGCAAAGAGAATGACCATCATTGA
CTTATTGCAGGGTCCTTGGATTACTGGACAGGTGGGTCAAGCAGGTGATA
CGAGTTCTGTTGTTCACTGACTGAGAAGATTCGCAGATTAGGACCCGTGT
TTTTCAGTAACCTGTTTTGGCACTAAATGCAAAGGTAGAAACTTTTAAAC
ACGTCCTATTCTATAATTTTACATAAATAATAGTTTTGTTGAGCGACTGG
AGTCACCTTTTCGTGAATCTTTGGTTTGTCAGGGGGTTAAACCAACGTAG
CCGAATGCCCTTCTATCAGCGGTACAAACCGTAAACTGTATCAGCTGCTT
GACCCACCCTATTGACACTATGCTATCCTTTGGTAAATCCAAAGGCAAAG
GCATGAACGAATATGAACATTAATTGACATAAGATTCAAATGATGTATGG
AAGCTAATACAAATGTTATTCGTAGATATTATTTGGATCAAGGGATAATT
TAATAATAACAATGCTTGTTTTTGTATCATGTATTCAGTGTTTTATGCTT
TTAACCATCTTTTTATACGGTCCATTTTAATTTGTATACATAACTTCAAC
TAGGGTATAAACCTCTCGGATGGCTTCCTGGCACAAAGTAAGTTTGTTTT
TTGGTAAGTTCAGGAAGTAgacaaagattttgtttgaaagaCTCAGTCCA
GGGTTTGCTTGTTAGTTTGTAGTTTTTCAATagattttattatattattt
caTTTACGCCTTATATTTGATTACTGTATTGTCTAAACAATACTGCATGT
TGCTATTCTGCGG
Run BLAST on NCBI

transcript from alignment at scaffold_58:1021292..1027706-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071013 ID=TCONS_00071013|Name=TCONS_00071013|organism=Clytia hemisphaerica|type=transcript|length=6415bp|location=Sequence derived from alignment at scaffold_58:1021292..1027706- (Clytia hemisphaerica)
GAAAAAAAATAGAAAATTAATAAATAAACAAAAACACATTGACGGCCACC
CTTAGAGGTGAAGAACCACAGCTACTATGGACCCATTCAAACAACTTGCC
CTTTTGCAGGCTAAAATGGCCGGCATGAGTAGGGCCCAGATTGAGGAAGC
CATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCAGACC
TTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGCTGCA
GGTGGTTTTTCCTATACTGTTGATAATATAACAAGACTGAAAAGATATCT
GATATTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAGCAGAAA
ATGTTCAAAATATTCCAGTTGTTGAAGAACTTTTAAAGGAGGGCAAAGGA
AAGGAGGTGATTGATTTGATCGTTCAATTTGCTCGTGAAGCACGTATCTC
AAAGGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTATCAGG
GAGATGCCATGTATGAAGATAGGACAATACAACGAGCTGCTTATGATAGT
ATTGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGGAGCT
TTGTGAACCATGTTATCAAAATAATTGGAAACCTTCAACCAAGCCAGTCA
GTAAGACGCAACTACGGAAGAAAGCAAAACAAGAGGCAATACAAGCAGCT
CAACAGCAGAACCCAGGGCCTTCCACCTCCACCGAAACCGCAGCCGCTCA
ACCACCGTCAGCAAAAGTGCCAGTTGAAACATGTGAAATTGTTGAAGAGG
GTGAACCTCCCAAGAAAAAGAAAAAGAAGACGAAGAAGAAGAAAAAACCA
AAGGAACCCAAACCTCAAACAACGCAAAGGTTCAAAAAATCTTCCAGTTG
GGGANGAAAAAACCAAAGGAACCCAAACCTTCCACAACGCAAAAGTTCAA
AAAATCTTCAAGTTGGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTT
ACACCGATTCAAATAAAGATGCCAATCGATTGTTATTGTTGATGACAAAG
TACAAACAACGTCATAATTGGAACCATGTTCAAACGTTGGGTTATTGTCA
TCCAAAAATGACGGGAGACGAGGAACAAGCTAAAAATATCGTCCTCCAGT
ATTGCACACGTGGCAAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAA
ATCGATGGGGTAACCATATCTCATTCCTTTCTATTTTATTTTTTTTAATT
TGTAAGAAGAGATATCATAATGATACTTTCGTCACTGTCTTTGTAGTGAG
AATTTATCTCGAATCTGTTCAAATGACACCACTTACTCTATTAATCTCCT
AACATTTGCTTACATGGCATTTTTAATCTCGCGTCGTGCGAGCACAAATT
TTGATAATTTCTTTTGTTTGTTATACTTTGTCGGCATAGAAGCTTCTTAT
TAAAAAAGAAGATCCTTATTATTTCCACACACTCCCTGGAGCTGGTAATC
GAAAAAGGTTGAATCCAAGTTTAGTAAATATCATGAAATTTTTCACATTG
ATAACAAGGTTTTCTTAATTTTTGGACTTTCTTTCCAGAATCAACCAATG
GATCCAATCACATCTCAAATATTACAACACATAAAAGTTCTTGAGGAAGT
CAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAGAGATTGTTGCAAT
TGTTGCATCAATACGGTATTCGGGAGGTGCCACAAGAATTTGAGGTGGAC
GCTGCAGGTCAGATGGTACAAGTGGAAAACACTCAACGTAAAAAATGTTC
TTTTCAACTGACCAGGGAGCATTTACCGAATGGCTTCCAAAAATTGAAGG
AGGTAATAGTTGATCAATTAAACGAAACTTAAAACCGCTAATATACGGTT
TTTTCAATCCCGATCAGCCCGATCAGATTTTCTATTGATCGAAAGTTAGT
CCTTGAAAGCTTGACTAAAAGCTCTTTTAATCGTAATTAAATACTTAAAT
GGTTCCAATTTCACTCTACTCATGAATACCAATTTTTCTCCCTTAAAATT
TTTAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGACAGCCTTGATC
AGGAATCTCGGCAAAATGACTAGCCTTGGGCTCTTTGATGATCCAGCAAA
CAGAGAAATCGTCAAGAAGGTTTTAGGGGATGGCTCTATTTTGAACAAAG
CAAGAATTCACCCAGTCAAGGTTTGCTATTTATTTAGAGTGGCGGCCAAG
GCGCATAAACCAGGGGCTCCCTGCATCTGTCGATGTTCCGATATTGAATA
GGCTTTTTTCGAGCCCTTTTAGTTTTGGCGCACGTTTTNTAAAAGTTCTT
GAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAGAGATT
GTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTGCCACAAGAATTTG
AGGTGGACGCTGCAGGTCAAATGGTACAAGTGGAAAACACTCAACGTAAA
AAATGTTCTTTTCAACTGACCAGGGAGCATTTACCGAATGGCTTCCAAAA
ATTGAAGGAGGTAATAGTTGATCATTTAAACGAAATTTAAAACCGCTAAT
ATACGGTTTTTTTCAATCCCGATCAGCCCGATCAGATTTTCTATTGATCG
AAAGGTAATCTTTGAAAGCTTGACTAGAAGCTCTTTTGATCGTAATTAAA
TACTTAAATGGTTCCAATTTTCACTCTACTCAACAGTACCAATCTTTCTC
CATTAAAATTTTAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGACA
GCCTTGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTTTGATGA
TCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGAGATGGCTCTATTT
TGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTATTTAGAGTG
ATGGCCAAGGCGCATAAACCAGGGGTTCAATGCTTCTTTCTATGTTCCGA
TATTGAATAGGCTTTTTTCGAGCCCTTTTAGTTTTGGCGCACGTTTTCTA
CACGACAATAAAAGCCGTGTGTAAATTTATGGAAACAAGACATATCTTTT
TGCTTTTTGGTGATATTTAACGTTGAATTTCCACAGTCTTAAGGCCGGTC
TCGCGCTGCTATCGCATTTTTTGGCTTCAGTGCTTTTTGCTTGGATAAAA
GATTGCGTCATAAAAATGTAGTGCGCGCTCGAAAAAAAACTTTTTTCAAC
CGTTACGTCAGATCGCGCCAATGGAGTTGCTTCATTTTTCTTTTGACCAA
TAGAGTGGAAGCTTCGCTCGAAAAAGTGCGATCAAAGCACGCGAAAGTGG
AGACCGGCCTTTACACTGCACCTTACATGAATGATCAAATACCAACTATA
TATCCATGAAGGGAAAAGTAGAAGACTGTTTCTTACTTGATGAATTTGTA
AGTGATGCACCGTGATTGAACCTGTAAGTAATGCACCCTGATTGAACCTG
TGAGTAAAGCACCCTGATTGAACCTTGTTTCAGATTCTGTTAGCATCAAA
GATGTATGAGCAAGGCCATGGTGATCAAGGCCAAAGCCATCAACCACAAC
AAGAATATCCAACAATGAGTCTTTCTCAACAACTACGACAACAACGACAA
CGACAACAACAGCCACAACAACCACAACAACGAGTACCAACCAAAGAACC
ACTTACTTGGATACCAAACGCTGAAATCTCCAAAGCTCTCAATGATGCTT
TCTACTTAAGTTTCAGGGTAAGCTCTACTTTAGAGATGCAAGCATGGTTA
ACATAGTCAATCATTCTGGTATAGCGAATTCCTATGGCTCATTTGAACTT
TTATATACTTGCTAAAATTGATTAGTCTTCTAGAGAATCTCTTTTAATAT
TTCCATAGCAACCCGGCAAGAATTCTTCCTTCCGTACGGACAAAAAGTTC
ATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGGCGTAACTGTGTAGG
GTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTA
CGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTTTCGGGCGCACGCTT
CAAAATATCGATCATTTATTGAAGAGGGATATGACCATCCGTGAAGCCAT
TCAATTGGGACGCTCTGTAAGTCGACTTCACTATCAAGAAATCTCGTTTT
GAATTATTCTCATTTCTTTATTTCTTCGAACTTGTGTCTTACCTAAATCA
GAATATACATCATTCTCAAAAAGTCAAAAATGTCTACGGTTGACTCTCGC
TAATTCCGAATTATATTTGAATCTTTCTAGAGTTTAAANTTTTTCTCTTT
ATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATCATTCTTAAAACG
TCAAAAATGTCTACGGTTGACTCTCGCTAATTCCGAATTATATTTGAATT
TTTCTAGAGTTCGAACTAATTCCCAGTCTCCATCAACGTAGAAGCCTCTT
CATTTCGAATATTTCTGTAATTCGAGCAAATCAGACTTCCCTTTCGACTT
TGAATGAGCGAGACTAAAATATATTTAAAAATCGACTTCCATGTCAATAG
TTTAATTCCAAAATTTTCTGTGCTTCTTTTATCAGTGATGTCATCATACC
TCATTAACTTAGACCATCCGTATATCTTTCAGATCAACTTTGGTGCAACA
GACTGTGCTCTACCAATGGTGCATGCCACGCAGAACAGACTGGATGTGGA
CGTTTTCATTGTTTACACTGACTCCGAAACTTGGGTTGGAAAAGTTCATC
CTTCTGAAGCTTTGAAGAATTATCGTCTAAAGATGAACAAACCGGATGCC
AAACTCATTGTTATGGCAATGCAGGTTTGTCTGTTCTCCATTTCACGGCC
TGTAATGCTGGAATATATGCAGTCTGTTCCTCTAAAGAATCCTGCATTGT
AACACGCATGCTTAATTTGTCGTTCTTTAAACCATATATTATATAGTTAA
TTCCCGTGATAAACAAAGAAGAATGAATCTGTAGGGTTGGTACAAGTCAC
TTTCAGTCGGGGCTGTGGACGGCGAAATATGTCGTTTTTTATGAAATTTG
TCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTCGTTAGATAAACCCC
TCATGATATTATGATATCTCGTTATAAAAAGTGATGGCATGAATTCATTT
CAGTCGGTTTCAATCCTGTAAAACCTTAAAAACACACGGTGAATAGTTCA
TCAACTTCTAGTTATTAGAATTCTGTAGATAACCCTTTTCTTTTTCATTG
TATTTGAACTTTTCGCACACTTGGGATTGTTGTGGTGCATACAAAGACCT
TTTTACTTCTCTTCATTTTTCAAGGTGAATGATTTCACGATTGCCGATCC
ACTTGATCGCGGTATGTTTGACGTTTGCGGATTCGACTCTAACGTACCTG
ATATGATCTGCGAGATCGCCAGAGGAAATATGTCTTAAAATCACCAAACA
AAGAGAAACGAAATCTAAACCTTTCTGGTTAGCCTTTGTTTACATGGCTC
TAGCTGCTGGTGATTTGGTGCTGGTGGTCTTAACATTCATATCGGGAAAA
ATGGAATTGATACATTATCAACCAGCGCAGCAAAGAGAATGACCATCATT
GACTTATTGCAGGGTCCTTGGATTACTGGACAGGTGGGTCAAGCAGGTGA
TACGAGTTCTGTTGTTCACTGACTGAGAAGATTCGCAGATTAGGACCCGT
GTTTTTCAGTAACCTGTTTTGGCACTAAATGCAAAGGTAGAAACTTTTAA
ACACGTCCTATTCTATAATTTTACATAAATAATAGTTTTGTTGAGCGACT
GGAGTCACCTTTTCGTGAATCTTTGGTTTGTCAGGGGGTTAAACCAACGT
AGCCGAATGCCCTTCTATCAGCGGTACAAACCGTAAACTGTATCAGCTGC
TTGACCCACCCTATTGACACTATGCTATCCTTTGGTAAATCCAAAGGCAA
AGGCATGAACGAATATGAACATTAATTGACATAAGATTCAAATGATGTAT
GGAAGCTAATACAAATGTTATTCGTAGATATTATTTGGATCAAGGGATAA
TTTAATAATAACAATGCTTGTTTTTGTATCATGTATTCAGTGTTTTATGC
TTTTAACCATCTTTTTATACGGTCCATTTTAATTTGTATACATAACTTCA
ACTAGGGTATAAACCTCTCGGATGGCTTCCTGGCACAAAGTAAGTTTGTT
TTTTGGTAAGTTCAGGAAGTAGACAAAGATTTTGTTTGAAAGACTCAGTC
CAGGGTTTGCTTGTTAGTTTGTAGTTTTTCAATAGATTTTATTATATTAT
TTCATTTACGCCTTATATTTGATTACTGTATTGTCTAAACAATACTGCAT
GTTGCTATTCTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044129XLOC_044129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071013-exon-scaffold_58-1575043694:1026498..1027706TCONS_00071013-exon-scaffold_58-1575043694:1026498..1027706Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1025855..1026118TCONS_00071013-exon-scaffold_58-1575043694:1025855..1026118Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1024778..1024942TCONS_00071013-exon-scaffold_58-1575043694:1024778..1024942Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1023940..1024173TCONS_00071013-exon-scaffold_58-1575043694:1023940..1024173Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1023541..1023798TCONS_00071013-exon-scaffold_58-1575043694:1023541..1023798Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1022833..1023024TCONS_00071013-exon-scaffold_58-1575043694:1022833..1023024Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1575043694:1021292..1022332TCONS_00071013-exon-scaffold_58-1575043694:1021292..1022332Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1026498..1027706TCONS_00071013-exon-scaffold_58-1510915933:1026498..1027706Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1025855..1026118TCONS_00071013-exon-scaffold_58-1510915933:1025855..1026118Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1024778..1024942TCONS_00071013-exon-scaffold_58-1510915933:1024778..1024942Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1023940..1024173TCONS_00071013-exon-scaffold_58-1510915933:1023940..1024173Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1023541..1023798TCONS_00071013-exon-scaffold_58-1510915933:1023541..1023798Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1022833..1023024TCONS_00071013-exon-scaffold_58-1510915933:1022833..1023024Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1510915933:1021292..1022332TCONS_00071013-exon-scaffold_58-1510915933:1021292..1022332Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1026498..1027706TCONS_00071013-exon-scaffold_58-1491911889:1026498..1027706Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1025855..1026118TCONS_00071013-exon-scaffold_58-1491911889:1025855..1026118Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1024778..1024942TCONS_00071013-exon-scaffold_58-1491911889:1024778..1024942Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1023940..1024173TCONS_00071013-exon-scaffold_58-1491911889:1023940..1024173Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1023541..1023798TCONS_00071013-exon-scaffold_58-1491911889:1023541..1023798Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1022833..1023024TCONS_00071013-exon-scaffold_58-1491911889:1022833..1023024Clytia hemisphaericaexon
TCONS_00071013-exon-scaffold_58-1491911889:1021292..1022332TCONS_00071013-exon-scaffold_58-1491911889:1021292..1022332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1021292..1027706 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288641	4.46846	4.67629	3.93753	39.6248	35.5706	51.6263	63.123	26.9042	48.2219	23.5692	20.1394	37.6141	32.3849	12.2666	16.8588	20.4168	16.6583	10.1593	16.6153	14.274	9.28635	5.76156	11.3125	57.1884	58.0722	12.2026	6.68497	7.94348	4.08244
Blast
[Close]
BLAST of TCONS_00071013 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 8.488e-70
Identity = 165/489 (33.74%), Postives = 249/489 (50.92%), Query Frame = 1 
Query:  952 KSSSWGRARRRGVGNFYTDSNKDANRLLLLMTKYKQRHNWNHVQTLGYCHPKMTGDEEQAKNIVLQYCTRGXXXXXXXXXXXXIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGIREVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALLQDMPMTALIRNLGKMTSLGLFDDPANREI--VKKVLGDGSILNKARIHPVKILLASKMYEQGHGDQGQSHQPQQEYPTMXXXXXXXXXXXXXXXXXXXXXXVPTKEPLTWIPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSGSMDWRNCVGCDFLTPAAASFALAMITMKVEPHCSVFAFGRTLQNIDHLLKRDMTIREAIQLGRSINFGATDCALPMVHATQNRLDVDVFIVYTDSETWVGKVHPSEALKNYRLKMNKPDAKLIVMAMQVNDFTIADPLDRGMFDVCGFDSNVPDMI 2406
            K   WGRA R+ + ++Y +  K    L L +TKYKQR+ W+H   L   H K +    +   IV +Y T+G +++ +      +   + +   T ++L++++ +E+VK  + ++      ++ L+ ++                              +L REHL     K KEVW ALLQ+MP+TAL+RNLGKMT+  + + P N E+  V + L +  +L KARIHP  IL+A + Y+ GHG +G+                                       L W P+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+ R  V    L  +  + A+ M+  + E    V AF   +  +   +  DMT+++ +     I  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR KM+ P AKLIV  M  N FTIADP DRGM D+CGFD+   D+I
Sbjct:  140 KCGMWGRALRKAIADWYNE--KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSS---EGLAIVTKYITKGWKEVHE------LYKEKALSVETEKLLKYLEAVEKVKRTRDEL-----EVIHLIEEH------------------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGK---------------------------------------LKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMNQR--VLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530
The following BLAST results are available for this feature:
BLAST of TCONS_00071013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RO608.488e-7033.7460 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G... [more]
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