TCONS_00071012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071012
Unique NameTCONS_00071012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071012 ID=TCONS_00071012|Name=TCONS_00071012|organism=Clytia hemisphaerica|type=transcript|length=2107bp
AGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGG
AGAGATTGTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTGCCACAA
GAATTTGAGGTGGACGCTGCAGGTCAAATGGTACAAGTGGAAAACACTCA
AcgtaaaaaatgttcttttcaaCTGACCAGGGAGCATTTACCGAATGGCT
TCCAAAAATTGAAGGAGgtttggGTGGCTCTACTTCAAGACATGCCCATG
ACAGCCTTGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTTTGA
TGATCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGAGATGGCTCTA
TTTTGAACAAAGCAAGAATTCACCCAGTCAAGATTCTGTTAGCATCAAAG
ATGTATGAGCAAGGCCATGGTGATCAAGGCCAAAGCCATCAACCACAACA
AGAATATCCAACAATGAGTCTTTCTCAACAACTACgacaacaacgacaac
gacaacaacagccacaacaaccacaacaacgaGTACCAACCAAAGAACCA
CTTACTTGGATACCAAACGCTGAAATCTCCAAAGCTCTCAATGATGCTTT
CTACTTAAGTTTCAGGCAACCCGGCAAGAATTCTTCCTTCCGTACGGACA
AAAAGTTCATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGGCGTAAC
TGTGTAGGGTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGC
CATGATTACGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTTTCGGGC
GCACGCTTCAAAATATCGATCATTTATTGAAGAGGGATATGACCATCCGT
GAAGCCATTCAATTGGGACGCTCTATCAACTTTGGTGCAACAGACTGTGC
TCTACCAATGGTGCATGCCACGCAGAACAGACTGGATGTGGACGTTTTCA
TTGTTTACACTGACTCCGAAACTTGGGTTGGAAAAGTTCATCCTTCTGAA
GCTTTGAAGAATTATCGTCTAAAGATGAACAAACCGGATGCCAAACTCAT
TGTTATGGCAATGCAGGTGAATGATTTCACGATTGCCGATCCACTTGATC
GCGGTATGTTTGACGTTTGCGGATTCGACTCTAACGTACCTGATATGATC
TGCGAGATCGCCAGAGGAAATATGTCTTAAAATCACCAAACAAAGAGAAA
CGAAATCTAAACCTTTCTGGTTAGCCTTTGTTTACATGGCTCTAGCTGCT
GGTGATTTGGTGCTGGTGGTCTTAACATTCATATCGGGAAAAATGGAATT
GATACATTATCAACCAGCGCAGCAAAGAGAATGACCATCATTGACTTATT
GCAGGGTCCTTGGATTACTGGACAGGTGGGTCAAGCAGGTGATACGAGTT
CTGTTGTTCACTGACTGAGAAGATTCGCAGATTAGGACCCGTGTTTTTCA
GTAACCTGTTTTGGCACTAAATGCAAAGGTAGAAACTTTTAAACACGTCC
TATTCTATAATTTTACATAAATAATAGTTTTGTTGAGCGACTGGAGTCAC
CTTTTCGTGAATCTTTGGTTTGTCAGGGGGTTAAACCAACGTAGCCGAAT
GCCCTTCTATCAGCGGTACAAACCGTAAACTGTATCAGCTGCTTGACCCA
CCCTATTGACACTATGCTATCCTTTGGTAAATCCAAAGGCAAAGGCATGA
ACGAATATGAACATTAATTGACATAAGATTCAAATGATGTATGGAAGCTA
ATACAAATGTTATTCGTAGATATTATTTGGATCAAGGGATAATTTAATAA
TAACAATGCTTGTTTTTGTATCATGTATTCAGTGTTTTATGCTTTTAACC
ATCTTTTTATACGGTCCATTTTAATTTGTATACATAACTTCAACTAGGGT
ATAAACCTCTCGGATGGCTTCCTGGCACAAAGTAAGTTTGTTTTTTGGTA
AGTTCAGGAAGTAgacaaagattttgtttgaaagaCTCAGTCCAGGGTTT
GCTTGTTAGTTTGTAGTTTTTCAATagattttattatattatttcaTTTA
CGCCTTATATTTGATTACTGTATTGTCTAAACAATACTGCATGTTGCTAT
TCTGCGG
Run BLAST on NCBI

transcript from alignment at scaffold_58:1021292..1025363-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071012 ID=TCONS_00071012|Name=TCONS_00071012|organism=Clytia hemisphaerica|type=transcript|length=4072bp|location=Sequence derived from alignment at scaffold_58:1021292..1025363- (Clytia hemisphaerica)
AGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGG
AGAGATTGTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTGCCACAA
GAATTTGAGGTGGACGCTGCAGGTCAAATGGTACAAGTGGAAAACACTCA
ACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGCATTTACCGAATGGCT
TCCAAAAATTGAAGGAGGTAATAGTTGATCATTTAAACGAAATTTAAAAC
CGCTAATATACGGTTTTTTTCAATCCCGATCAGCCCGATCAGATTTTCTA
TTGATCGAAAGGTAATCTTTGAAAGCTTGACTAGAAGCTCTTTTGATCGT
AATTAAATACTTAAATGGTTCCAATTTTCACTCTACTCAACAGTACCAAT
CTTTCTCCATTAAAATTTTAGGTTTGGGTGGCTCTACTTCAAGACATGCC
CATGACAGCCTTGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCT
TTGATGATCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGAGATGGC
TCTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTATT
TAGAGTGATGGCCAAGGCGCATAAACCAGGGGTTCAATGCTTCTTTCTAT
GTTCCGATATTGAATAGGCTTTTTTCGAGCCCTTTTAGTTTTGGCGCACG
TTTTCTACACGACAATAAAAGCCGTGTGTAAATTTATGGAAACAAGACAT
ATCTTTTTGCTTTTTGGTGATATTTAACGTTGAATTTCCACAGTCTTAAG
GCCGGTCTCGCGCTGCTATCGCATTTTTTGGCTTCAGTGCTTTTTGCTTG
GATAAAAGATTGCGTCATAAAAATGTAGTGCGCGCTCGAAAAAAAACTTT
TTTCAACCGTTACGTCAGATCGCGCCAATGGAGTTGCTTCATTTTTCTTT
TGACCAATAGAGTGGAAGCTTCGCTCGAAAAAGTGCGATCAAAGCACGCG
AAAGTGGAGACCGGCCTTTACACTGCACCTTACATGAATGATCAAATACC
AACTATATATCCATGAAGGGAAAAGTAGAAGACTGTTTCTTACTTGATGA
ATTTGTAAGTGATGCACCGTGATTGAACCTGTAAGTAATGCACCCTGATT
GAACCTGTGAGTAAAGCACCCTGATTGAACCTTGTTTCAGATTCTGTTAG
CATCAAAGATGTATGAGCAAGGCCATGGTGATCAAGGCCAAAGCCATCAA
CCACAACAAGAATATCCAACAATGAGTCTTTCTCAACAACTACGACAACA
ACGACAACGACAACAACAGCCACAACAACCACAACAACGAGTACCAACCA
AAGAACCACTTACTTGGATACCAAACGCTGAAATCTCCAAAGCTCTCAAT
GATGCTTTCTACTTAAGTTTCAGGGTAAGCTCTACTTTAGAGATGCAAGC
ATGGTTAACATAGTCAATCATTCTGGTATAGCGAATTCCTATGGCTCATT
TGAACTTTTATATACTTGCTAAAATTGATTAGTCTTCTAGAGAATCTCTT
TTAATATTTCCATAGCAACCCGGCAAGAATTCTTCCTTCCGTACGGACAA
AAAGTTCATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGGCGTAACT
GTGTAGGGTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCC
ATGATTACGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTTTCGGGCG
CACGCTTCAAAATATCGATCATTTATTGAAGAGGGATATGACCATCCGTG
AAGCCATTCAATTGGGACGCTCTGTAAGTCGACTTCACTATCAAGAAATC
TCGTTTTGAATTATTCTCATTTCTTTATTTCTTCGAACTTGTGTCTTACC
TAAATCAGAATATACATCATTCTCAAAAAGTCAAAAATGTCTACGGTTGA
CTCTCGCTAATTCCGAATTATATTTGAATCTTTCTAGAGTTTAAANTTTT
TCTCTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATCATTCT
TAAAACGTCAAAAATGTCTACGGTTGACTCTCGCTAATTCCGAATTATAT
TTGAATTTTTCTAGAGTTCGAACTAATTCCCAGTCTCCATCAACGTAGAA
GCCTCTTCATTTCGAATATTTCTGTAATTCGAGCAAATCAGACTTCCCTT
TCGACTTTGAATGAGCGAGACTAAAATATATTTAAAAATCGACTTCCATG
TCAATAGTTTAATTCCAAAATTTTCTGTGCTTCTTTTATCAGTGATGTCA
TCATACCTCATTAACTTAGACCATCCGTATATCTTTCAGATCAACTTTGG
TGCAACAGACTGTGCTCTACCAATGGTGCATGCCACGCAGAACAGACTGG
ATGTGGACGTTTTCATTGTTTACACTGACTCCGAAACTTGGGTTGGAAAA
GTTCATCCTTCTGAAGCTTTGAAGAATTATCGTCTAAAGATGAACAAACC
GGATGCCAAACTCATTGTTATGGCAATGCAGGTTTGTCTGTTCTCCATTT
CACGGCCTGTAATGCTGGAATATATGCAGTCTGTTCCTCTAAAGAATCCT
GCATTGTAACACGCATGCTTAATTTGTCGTTCTTTAAACCATATATTATA
TAGTTAATTCCCGTGATAAACAAAGAAGAATGAATCTGTAGGGTTGGTAC
AAGTCACTTTCAGTCGGGGCTGTGGACGGCGAAATATGTCGTTTTTTATG
AAATTTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTCGTTAGAT
AAACCCCTCATGATATTATGATATCTCGTTATAAAAAGTGATGGCATGAA
TTCATTTCAGTCGGTTTCAATCCTGTAAAACCTTAAAAACACACGGTGAA
TAGTTCATCAACTTCTAGTTATTAGAATTCTGTAGATAACCCTTTTCTTT
TTCATTGTATTTGAACTTTTCGCACACTTGGGATTGTTGTGGTGCATACA
AAGACCTTTTTACTTCTCTTCATTTTTCAAGGTGAATGATTTCACGATTG
CCGATCCACTTGATCGCGGTATGTTTGACGTTTGCGGATTCGACTCTAAC
GTACCTGATATGATCTGCGAGATCGCCAGAGGAAATATGTCTTAAAATCA
CCAAACAAAGAGAAACGAAATCTAAACCTTTCTGGTTAGCCTTTGTTTAC
ATGGCTCTAGCTGCTGGTGATTTGGTGCTGGTGGTCTTAACATTCATATC
GGGAAAAATGGAATTGATACATTATCAACCAGCGCAGCAAAGAGAATGAC
CATCATTGACTTATTGCAGGGTCCTTGGATTACTGGACAGGTGGGTCAAG
CAGGTGATACGAGTTCTGTTGTTCACTGACTGAGAAGATTCGCAGATTAG
GACCCGTGTTTTTCAGTAACCTGTTTTGGCACTAAATGCAAAGGTAGAAA
CTTTTAAACACGTCCTATTCTATAATTTTACATAAATAATAGTTTTGTTG
AGCGACTGGAGTCACCTTTTCGTGAATCTTTGGTTTGTCAGGGGGTTAAA
CCAACGTAGCCGAATGCCCTTCTATCAGCGGTACAAACCGTAAACTGTAT
CAGCTGCTTGACCCACCCTATTGACACTATGCTATCCTTTGGTAAATCCA
AAGGCAAAGGCATGAACGAATATGAACATTAATTGACATAAGATTCAAAT
GATGTATGGAAGCTAATACAAATGTTATTCGTAGATATTATTTGGATCAA
GGGATAATTTAATAATAACAATGCTTGTTTTTGTATCATGTATTCAGTGT
TTTATGCTTTTAACCATCTTTTTATACGGTCCATTTTAATTTGTATACAT
AACTTCAACTAGGGTATAAACCTCTCGGATGGCTTCCTGGCACAAAGTAA
GTTTGTTTTTTGGTAAGTTCAGGAAGTAGACAAAGATTTTGTTTGAAAGA
CTCAGTCCAGGGTTTGCTTGTTAGTTTGTAGTTTTTCAATAGATTTTATT
ATATTATTTCATTTACGCCTTATATTTGATTACTGTATTGTCTAAACAAT
ACTGCATGTTGCTATTCTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044129XLOC_044129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071012-exon-scaffold_58-1575043694:1025147..1025363TCONS_00071012-exon-scaffold_58-1575043694:1025147..1025363Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1575043694:1024778..1024942TCONS_00071012-exon-scaffold_58-1575043694:1024778..1024942Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1575043694:1023940..1024173TCONS_00071012-exon-scaffold_58-1575043694:1023940..1024173Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1575043694:1023541..1023798TCONS_00071012-exon-scaffold_58-1575043694:1023541..1023798Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1575043694:1022833..1023024TCONS_00071012-exon-scaffold_58-1575043694:1022833..1023024Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1575043694:1021292..1022332TCONS_00071012-exon-scaffold_58-1575043694:1021292..1022332Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1025147..1025363TCONS_00071012-exon-scaffold_58-1510915933:1025147..1025363Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1024778..1024942TCONS_00071012-exon-scaffold_58-1510915933:1024778..1024942Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1023940..1024173TCONS_00071012-exon-scaffold_58-1510915933:1023940..1024173Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1023541..1023798TCONS_00071012-exon-scaffold_58-1510915933:1023541..1023798Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1022833..1023024TCONS_00071012-exon-scaffold_58-1510915933:1022833..1023024Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1510915933:1021292..1022332TCONS_00071012-exon-scaffold_58-1510915933:1021292..1022332Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1025147..1025363TCONS_00071012-exon-scaffold_58-1491911889:1025147..1025363Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1024778..1024942TCONS_00071012-exon-scaffold_58-1491911889:1024778..1024942Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1023940..1024173TCONS_00071012-exon-scaffold_58-1491911889:1023940..1024173Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1023541..1023798TCONS_00071012-exon-scaffold_58-1491911889:1023541..1023798Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1022833..1023024TCONS_00071012-exon-scaffold_58-1491911889:1022833..1023024Clytia hemisphaericaexon
TCONS_00071012-exon-scaffold_58-1491911889:1021292..1022332TCONS_00071012-exon-scaffold_58-1491911889:1021292..1022332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1021292..1025363 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.57253	5.96213	4.76222	3.64175	0	0	0.772513	0	16.8012	23.5376	12.1686	10.2224	20.373	18.7609	19.1099	16.8477	17.322	16.2769	19.7777	24.7722	13.1071	18.1737	16.2593	13.5054	0	0	14.4417	19.433	10.4397	8.71928
Blast
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BLAST of TCONS_00071012 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 9.843e-61
Identity = 133/331 (40.18%), Postives = 182/331 (54.98%), Query Frame = 2 
Query:  170 QLTREHLPNGFQKLKEVWVALLQDMPMTALIRNLGKMTSLGLFDDPANREI--VKKVLGDGSILNKARIHPVKILLASKMYEQGHGDQGQSHQPQQEYPTMXXXXXXXXXXXXXXXXXXXXXXVPTKEPLTWIPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSGSMDWRNCVGCDFLTPAAASFALAMITMKVEPHCSVFAFGRTLQNIDHLLKRDMTIREAIQLGRSINFGATDCALPMVHATQNRLDVDVFIVYTDSETWVGKVHPSEALKNYRLKMNKPDAKLIVMAMQVNDFTIADPLDRGMFDVCGFDSNVPDMI 1150
            +L REHL     K KEVW ALLQ+MP+TAL+RNLGKMT+  + + P N E+  V + L +  +L KARIHP  IL+A + Y+ GHG +G+                                       L W P+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+ R  V    L  +  + A+ M+  + E    V AF   +  +   +  DMT+++ +     I  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR KM+ P AKLIV  M  N FTIADP DRGM D+CGFD+   D+I
Sbjct:  252 RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGK---------------------------------------LKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMNQR--VLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530
The following BLAST results are available for this feature:
BLAST of TCONS_00071012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RO609.843e-6140.1860 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G... [more]
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