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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071011 ID=TCONS_00071011|Name=TCONS_00071011|organism=Clytia hemisphaerica|type=transcript|length=5848bpRun BLAST on NCBI protein sequence of TCONS_00071011-protein >TCONS_00071011-protein ID=TCONS_00071011-protein|Name=TCONS_00071011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=881bp MSDGQQSSSSAQQQEDVPSSENIVGVELFSSDEVNHLRFENPSQEEDVRRRun BLAST on NCBI transcript from alignment at scaffold_58:1007935..1020829- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071011 ID=TCONS_00071011|Name=TCONS_00071011|organism=Clytia hemisphaerica|type=transcript|length=12895bp|location=Sequence derived from alignment at scaffold_58:1007935..1020829- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:1007935..1020829- >TCONS_00071011 ID=TCONS_00071011|Name=TCONS_00071011|organism=Clytia hemisphaerica|type=CDS|length=15876bp|location=Sequence derived from alignment at scaffold_58:1007935..1020829- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071011 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 8.430e-21 Identity = 139/599 (23.21%), Postives = 254/599 (42.40%), Query Frame = 1
Query: 3607 YEYYGINELKKFLMIGCKACPQFTECHKDKKKVESVAQKHQHECLRIVRNLLAIGKSAEIIDLVKE-KTGCLLLHYEPLFTVLSLCSIIGEKPVRKQIYEIALEMCFNCPRLFYFVACSEHFRHLLDDVVTSGKQDKRVKYWEPLRMRMIARFYNRYEPHELLYMTTRHKQRYKITHRTILCKSRPPPRGDHKEAIDLIFCYLSRGFNKTKAKANVKGKAIQPMTSSVFQKIELLEEIKSLSFNDENIGKLQRIIEENIEHETMNEWQGYSQPSPTILFFNVLLEHIPNEFLRQYKIWRSLLPGMPIGTLIFKLGVISHHGLFM-EDSDDTLATKEQVDENIQTALKIIKEQKNRLHPFKILKAAKCYSTGHTDLRIFTREIAERKLLRIPLKWKPSPQIIDALYEAF-RTQQVVEGCVSERKILFAMDNRCTEMYDEQLQGCPSLTPIDAANILLYLLWKAQKDENEVVFYGKRREIIKLKAFAENKLEHFEKDLREKSSKAGPINLIKTIDYAEKFKK-FDAIVVLTDKKPRFATGGV---INEWEKYKKIVPDAKMVLVCLNECKCFEFGRDD---MLYMCGWDENSFANIAHFLM 5373
++ +N L +FL G + + K + + ++ +R++ + G+ E+I +K EP+ L++CS + ++ ++ E+C LF F+ F+ L K+ + W + IA +YN L T++KQR +H+ +L S P E + ++ Y+++G+ + K KA+ T + + +E +E++K E I +IEE+ ++ EH+ L+ ++W++LL MP+ L+ LG ++ + + +S+ +L ++ +E K++K K R+HPF IL A + Y TGH LR LKW+P +I+ AL AF +T + VE + ++ L A+D + M L + + + AA + ++ + +KD V F E++ + L+ + + AG + + +A+K D +V TD + FA GGV I E KK+ AK++ VC F D ML MCG+D + I +F +
Sbjct: 25 WQVTDMNRLHRFLCFGSEGGTYYI-------KEQKLGLENAEALIRLIED----GRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFI----QFKKDL-------KESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSS---EGLAIVTKYITKGWKEVHEL--YKEKALSVETEKLLKYLEAVEKVKRTRDELEVI----HLIEEH----------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNE------KLLK--KARIHPFHILIALETYKTGHG--------------LRGKLKWRPDEEILKALDAAFYKTFKTVEP--TGKRFLLAVDVSAS-MNQRVLGSILNASTVAAA--MCMVVTRTEKDSYVVAF---SDEMVPCPVTTDMTLQQVLMAMSQ--IPAGGTDCSLPMIWAQKTNTPADVFIVFTDNET-FA-GGVHPAIALREYRKKMDIPAKLI-VCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTL 535 The following BLAST results are available for this feature:
BLAST of TCONS_00071011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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