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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071007 ID=TCONS_00071007|Name=TCONS_00071007|organism=Clytia hemisphaerica|type=transcript|length=4590bpRun BLAST on NCBI protein sequence of TCONS_00071007-protein >TCONS_00071007-protein ID=TCONS_00071007-protein|Name=TCONS_00071007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp MLKLNVSSYFVGRLRKFSQRTEGKEMAEVTDDDTQTKVPKQASDTKQPSARun BLAST on NCBI transcript from alignment at scaffold_58:974573..991296- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071007 ID=TCONS_00071007|Name=TCONS_00071007|organism=Clytia hemisphaerica|type=transcript|length=16724bp|location=Sequence derived from alignment at scaffold_58:974573..991296- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:974573..991296- >TCONS_00071007 ID=TCONS_00071007|Name=TCONS_00071007|organism=Clytia hemisphaerica|type=CDS|length=30549bp|location=Sequence derived from alignment at scaffold_58:974573..991296- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071007 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 3.523e-76 Identity = 156/384 (40.62%), Postives = 232/384 (60.42%), Query Frame = -1
Query: 3406 RVTLNISGEIYETYTKTLSRFPGTLLGDNEKRNNFFCDTRQQYFFNRNRISFGAILYFYQSRGLLTCPLDISLDDFEEECLFFQLPSLSIQKMKMKRGIILDEEKELETKDCQYHVWNFLENPESSNMASVYAVFNLIMVFLSIVVACLETVEELKD--------FHWESIELVLN----------------VWFLGELVLRCIFCPSKKLFLQSAMTWIDISAVVPYFLLLASSKKKING---------LSFLRIIRFLKIVRLFRLSRHSKRLKIVGTIXXXXXXXXXXXXXXXXXXXXXXXXLMYYIEGVGHPNTHFTSIPQSLWWAVQTVTTLGYGDITPFTVAGKILAASFMLFGAVTISLPVLSIVAKFTLIYSRNMK 4458
RV +NISG +ET KTL++FP TLLG+ +KR +F R +YFF+RNR SF AILY+YQS G L P+++ LD F EE F++L +++K + G I +EE+ L K+ Q VW E PESS A V A+ +++++ +SIV+ CLET+ ELKD ++ ++ N +WF ELV+R CPSK F ++ M +IDI A++PYF+ L + + G L+ LR+IR +++ R+F+LSRHSK L+I+G LK+S+ +L LL+ L I +I S +Y+ E +HF+SIP + WWAV ++TT+GYGD+ P T+ GKI+ + + G +TI+LPV IV+ F Y R +
Sbjct: 38 RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA-EEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE 420 HSP 2 Score: 200.29 bits (508), Expect = 3.373e-54 Identity = 127/384 (33.07%), Postives = 200/384 (52.08%), Query Frame = 1
Query: 2227 QRIQFNVSGKVFETMVTTLQQFPDSLLGNQTSRDQFYCKRTNQYFLNRNATCFECILFFYQSKGRLYRPPDIPVRTFFDECQFYELPESSVYILKVKERYLLREHIREKHFPKKYDDNLQMWLWQTLENPSINVGAKCFYIVQTIAIIMSIILSCLES---FKHDHD------------------ALKEDYFKVELALCSWFFLETLARAIVCPNKFRYFTSLLNWCDIVAVAPHSIIYSYH----------EETKLLQQTXXXXXXXXXXXXKISPRTKAVCLI---LKDSASDLYLFFFGLLMAVAFGSSTMYHLEMTDPHTNFTSIPQGMWWGMQSFLTVGYGDLIPQTIAGRMFATLFMIVGMDTVLLPVLSLIMKFADF 3276
+R+ N+SG FET + TL QFP++LLGN R +++ N+YF +RN F+ IL++YQS GRL RP ++P+ F +E +FYEL E ++ + E ++ E E+ P+K Q +W E P + A+ IV + I++SI++ CLE+ K D D + +F VE WF E + R CP+K +F +++N+ DIVA+ P+ I E+ L R +R++R+ R+ K+S +K + ++ LK S +L L F L + V SS +Y E + ++F+SIP WW + S TVGYGD+ P TI G++ +L I G+ T+ LPV ++ F F
Sbjct: 37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEE---ERPLPEK---EYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 414 The following BLAST results are available for this feature:
BLAST of TCONS_00071007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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