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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071003 ID=TCONS_00071003|Name=TCONS_00071003|organism=Clytia hemisphaerica|type=transcript|length=1521bp agTGGAGATGAGAAAGATAGTAAatgttttgcagtgaggattggtttatt tcattattttcaaatgtcTATCAATTTCaatggtctgtgagaagggggtg cacTATTGAATTTGATTGTTAACTCATCCAAAAAACAAACGaaactcttt ttgaaaaacCGAGGTGCGCTTCAGTTTGAGCGGAAAATAAATATGTAATT TGGTGTGTGTTTTACACGACATTGCGATAAACAAAACAATCTTTTATCTG ATGGAAGTAGGAAGAATTTTCATTCAATGTTCAACATAATAATGGCTGCC ACTTTTGACAGAGAAAAGATTTTGTGTATGGTGTTTATTTTACACGACAG CAAAACAAACGTAATAGCTTTTCATGAAAAACCACCGAGTTGCAAGGATA TAACTTAAGTGGGGGAAGAACATCCATACCACTTAAACTCGGCTATTATT CATGATGGACATGCGACTCATTTTGATCACTTTGGCGCTTCAATGGAATG CTCTTTATGGGTTTCCACTTAAAGAAAGTGACGTTCTTCCTGAACTGGAA TACCGAGATTTGCTGGTTTCAGGATACATCCCACCTCAAAACGACACTTC GGACGTCTACTTACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGAT ACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACCATCTCAACAA AAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTC GGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGAT ACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACCATCTCAACAA AAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTC GGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGAT ACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTACCATCTCAACAA AAAGACGATTTGCTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTC GGACGTCTACCTGCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGAT ACATCCCACCTCAAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAA AAAGACGATTTGCTGGTTTCAGAATATTTTCCACCTTTGGCAAATGATCC TTTACTTGGCTTAGACAATTATTTTCCCCCaggaaaagaagattttttat caaagaaaCGAAACGCCGAACGTGATCAGGAAGATAAGCTTTTGGAAAGC TTCCTTCATTAAGTCAAGCCACAAACATTTGAACATTGAATATTCTTTGA TcaagttgaaatattttttggcaAATGCTTTATTTAGATTAACATGTATT TTTATAAGGCGTTTTCTCTCTACATTTTCGTATTGAAAAAGTATAATTCA ATAAATAACTCATAATTATCCTTCCAACGAACACATAGCAGCATATGAAA AGATTTTCACCTATTTCTAAC Run BLAST on NCBI transcript from alignment at scaffold_58:939668..941326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071003 ID=TCONS_00071003|Name=TCONS_00071003|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at scaffold_58:939668..941326- (Clytia hemisphaerica) AGTGGAGATGAGAAAGATAGTAAATGTTTTGCAGTGAGGATTGGTTTATT
TCATTATTTTCAAATGTCTATCAATTTCAATGGTCTGTGAGAAGGGGGTG
CACTATTGAATTTGATTGTTAACTCATCCAAAAAACAAACGAAACTCTTT
TTGAAAAACCGAGGTGCGCTTCAGTTTGAGCGGAAAATAAATATGTAATT
TGGTGTGTGTTTTACACGACATTGCGATAAACAAAACAATCTTTTATCTG
ATGGAAGTAGGAAGAATTTTCATTCAATGTTCAACATAATAATGGCTGCC
ACTTTTGACAGAGAAAAGATTTTGTGTATGGTGTTTATTTTACACGACAG
CAAAACAAACGTAATAGCTTTTCATGAAAAACCACCGAGTTGCAAGGATA
TAACTTAAGTGGGGGAAGAACATCCATACCACTTAAACTCGGCTATTATT
CATGATGGACATGCGACTCATTTTGATCACTTTGGCGCTTCAATGGAATG
CTCTTTATGGGTTTCCACTTAAAGGTATTTTGTTGAGTTTTATTTAACCA
ATAAAATGTGTCCATTATAGCTTTTTTTCTTGAAGTATTTTCTCATTATC
ACAATATCCCACCTCATTGATTGTGATTGAAGATGAATTTGATTTCTTTG
TATTTTTAGAAGAAAGTGACGTTCTTCCTGAACTGGAATACCGAGATTTG
CTGGTTTCAGGATACATCCCACCTCAAAACGACACTTCGGACGTCTACTT
ACCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTC
AAAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTG
CTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCT
GCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTC
AAAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTG
CTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCT
GCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTC
AAAACGACCCTTCGGACGTCTACCTACCATCTCAACAAAAAGACGATTTG
CTAGTTTCAGGATACATCCCACCTCAAAACGACCCTTCGGACGTCTACCT
GCCATCTCAACAAAAAGACGATTTGCTAGTTTCAGGATACATCCCACCTC
AAAACGACCCTTCGGACGTCTACCTGCCATCTCAACAAAAAGACGATTTG
CTGGTTTCAGAATATTTTCCACCTTTGGCAAATGATCCTTTACTTGGCTT
AGACAATTATTTTCCCCCAGGAAAAGAAGATTTTTTATCAAAGAAACGAA
ACGCCGAACGTGATCAGGAAGATAAGCTTTTGGAAAGCTTCCTTCATTAA
GTCAAGCCACAAACATTTGAACATTGAATATTCTTTGATCAAGTTGAAAT
ATTTTTTGGCAAATGCTTTATTTAGATTAACATGTATTTTTATAAGGCGT
TTTCTCTCTACATTTTCGTATTGAAAAAGTATAATTCAATAAATAACTCA
TAATTATCCTTCCAACGAACACATAGCAGCATATGAAAAGATTTTCACCT
ATTTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071003-exon-scaffold_58-1575043694:940803..941326 | TCONS_00071003-exon-scaffold_58-1575043694:940803..941326 | Clytia hemisphaerica | exon |
TCONS_00071003-exon-scaffold_58-1575043694:939668..940664 | TCONS_00071003-exon-scaffold_58-1575043694:939668..940664 | Clytia hemisphaerica | exon |
TCONS_00071003-exon-scaffold_58-1510915933:940803..941326 | TCONS_00071003-exon-scaffold_58-1510915933:940803..941326 | Clytia hemisphaerica | exon |
TCONS_00071003-exon-scaffold_58-1510915933:939668..940664 | TCONS_00071003-exon-scaffold_58-1510915933:939668..940664 | Clytia hemisphaerica | exon |
TCONS_00071003-exon-scaffold_58-1491911889:940803..941326 | TCONS_00071003-exon-scaffold_58-1491911889:940803..941326 | Clytia hemisphaerica | exon |
TCONS_00071003-exon-scaffold_58-1491911889:939668..940664 | TCONS_00071003-exon-scaffold_58-1491911889:939668..940664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_58 | supercontig | scaffold_58:939668..941326 - |
Blast
The following BLAST results are available for this feature:
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