TCONS_00070996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070996
Unique NameTCONS_00070996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070996 ID=TCONS_00070996|Name=TCONS_00070996|organism=Clytia hemisphaerica|type=transcript|length=991bp
GTGGTGAGCTAAGGTAAgcacaaaaagtttttattttttcagaaaatgga
gATGAACTGGaatcaaattttgaataaacAAATATCTATCTCTAGTTTCT
CGAATGTTTGAAATAATAGTTCGAAATATTCAAATTGGTGTCAGGAGATT
TTTACGCTCTTAATTTGAGGTTTAAATTTCGTctcaagaaaagttttttt
ttctttcagaaaatacaattgaattaatgaaatttcttttttcttttcag
aaaaaaataaaaatggcagCTCGATTCATTCTTAGCTGTCTCCTTGTTGG
AGTAGCTATGGCTAACGCCAAAACTTTACACGaAATGTTGAAACGTGATG
CCAACCCATGTTCCGCACCATGCCCAGCTGCATGTGCCCCAGCATGTGCT
CCAGTTTGTTGTGctccaccaccaccacctccaccaccacccccaccacc
acctccaccaccaccaccacccccaccaccaccaccagcaCCAATTCCAG
GAAACCCAGGACCCCCAGGACGTCCAGGACCACCAGGAGCCCCAGGACCA
GCTGGACCACCCGGACTTCCAGGACCACCAGGAATGCCAGGACCACCAGG
ACCAGGAGGATTACCAGGACAACCCgccccaccaccaccaccatgTCCAT
CAGTCTGTGTTACTCAATGTGTACCAACTTGCCCACAATACTGTTGCCCA
GCCAGAAAGTAAATCATTGGAGGATTTTAGAGACTATTCtaattttattt
caagttttgaATGGTTGACAACTTGGATTGCAGTTTTTGGTGTGATGTGC
CAACTCTGTGATTTCGACACCAATCACAtcacaaataaataaatattttg
ataagaGTAATTTATTTTCgaattatttttgttaaaaactatgaaattat
aactatagaaattatattgtattttttacattgaaaatattgaaattcta
cAAAATGATGCAAATGAAACAAAATTCATTTTCCattccat
Run BLAST on NCBI

transcript from alignment at scaffold_58:891162..892410-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070996 ID=TCONS_00070996|Name=TCONS_00070996|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at scaffold_58:891162..892410- (Clytia hemisphaerica)
GTGGTGAGCTAAGGTAAGCACAAAAAGTTTTTATTTTTTCAGAAAATGGA
GATGAACTGGAATCAAATTTTGAATAAACAAATATCTATCTCTAGTTTCT
CGAATGTTTGAAATAATAGTTCGAAATATTCAAATTGGTGTCAGGAGATT
TTTACGCTCTTAATTTGAGGTTTAAATTTCGTCTCAAGAAAAGTTTTTTT
TTCTTTCAGAAAATACAATTGAATTAATGAAATTTCTTTTTTCTTTTCAG
AAAAAAATAAAAATGGCAGCTCGATTCATTCTTAGCTGTCTCCTTGTTGG
AGTAGCTATGGCTAACGCCAAAACTTTACACGGTAAGAAGGTTTTAATCT
ATTTTGTTCTTTTTGATCATTTTCATTATCCTTTGTTCTTCAATGAATTT
ACATTGACTTTTTTTAACTATTCAACTTAAGGGCGGTTGTGTTTAATCGA
ATTAACTCGCACATTATTTTCGTAAAATTTCAAATTCGCGAAAATTTGAA
TAAACACAAACTTATATCGAAAGTTTTTATTTATTTAATCTAAATGAAAT
TTCTGACATTTACTTATGAATCTTTTTTCATTTTTTACAGAAATGTTGAA
ACGTGATGCCAACCCATGTTCCGCACCATGCCCAGCTGCATGTGCCCCAG
CATGTGCTCCAGTTTGTTGTGCTCCACCACCACCACCTCCACCACCACCC
CCACCACCACCTCCACCACCACCACCACCCCCACCACCACCACCAGCACC
AATTCCAGGAAACCCAGGACCCCCAGGACGTCCAGGACCACCAGGAGCCC
CAGGACCAGCTGGACCACCCGGACTTCCAGGACCACCAGGAATGCCAGGA
CCACCAGGACCAGGAGGATTACCAGGACAACCCGCCCCACCACCACCACC
ATGTCCATCAGTCTGTGTTACTCAATGTGTACCAACTTGCCCACAATACT
GTTGCCCAGCCAGAAAGTAAATCATTGGAGGATTTTAGAGACTATTCTAA
TTTTATTTCAAGTTTTGAATGGTTGACAACTTGGATTGCAGTTTTTGGTG
TGATGTGCCAACTCTGTGATTTCGACACCAATCACATCACAAATAAATAA
ATATTTTGATAAGAGTAATTTATTTTCGAATTATTTTTGTTAAAAACTAT
GAAATTATAACTATAGAAATTATATTGTATTTTTTACATTGAAAATATTG
AAATTCTACAAAATGATGCAAATGAAACAAAATTCATTTTCCATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044122XLOC_044122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070996-exon-scaffold_58-1575043694:892079..892410TCONS_00070996-exon-scaffold_58-1575043694:892079..892410Clytia hemisphaericaexon
TCONS_00070996-exon-scaffold_58-1575043694:891162..891820TCONS_00070996-exon-scaffold_58-1575043694:891162..891820Clytia hemisphaericaexon
TCONS_00070996-exon-scaffold_58-1510915933:892079..892410TCONS_00070996-exon-scaffold_58-1510915933:892079..892410Clytia hemisphaericaexon
TCONS_00070996-exon-scaffold_58-1510915933:891162..891820TCONS_00070996-exon-scaffold_58-1510915933:891162..891820Clytia hemisphaericaexon
TCONS_00070996-exon-scaffold_58-1491911889:892079..892410TCONS_00070996-exon-scaffold_58-1491911889:892079..892410Clytia hemisphaericaexon
TCONS_00070996-exon-scaffold_58-1491911889:891162..891820TCONS_00070996-exon-scaffold_58-1491911889:891162..891820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:891162..892410 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.343808	0.734544	0.26134	0	0	0.501958	0.768416	3.09597	0.314863	0	0	0	0.643826	0.529241	0.496879	0	0	0.61189	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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