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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070907 ID=TCONS_00070907|Name=TCONS_00070907|organism=Clytia hemisphaerica|type=transcript|length=2163bp
NNtttggtgcacccggtatatttcgccatcagtatatagaataagaaatc
atagcatggatctccaggctaaatGATAAGCAGAAGAGCTCCTAAATTTT
CCTAATTTTGGCATGTACTAATTTCGTAGTGAGAAAACTACAAAAGTACT
CTATTTTGAGGAAAAATGATTTCGGTGAAATTAATTTTCGTGATAATAAG
TTGCCAATTAACGCATAcacggttttttataaaaattaaacatggccaaa
atcttaagtacaagttaagaacattttaaggcatcgcagactctaaaaca
gccgatttcttggcaaaatggactaaaatactctaaaaatggtgaaaata
agaacatgttaagaacttttttaagcttaaaactcaaaaagttaagaaga
cCGGAAGGCCTCAAAAAGCTCTTATAAAACAACGCATTACATATTGGAAA
AGCTCACCAACAGGTTTGGATGTTACTTTTCCATACTTGGGTAAGGGTTA
AAAGGGATGAAtgtcatttaaaaataaaactcttTACAAAATATAATTTA
TCATCTACTTTGTACAAAACTTTAATCAATACCCCTGTAAAgaattttct
tacaaaaaatacttaaaaattaGTTGTAAAGTTTCCTGGAATGGAACGCA
AGGAAAATCCGGGCTTTTTTAACTCAATGACTTTTTCACCGGTTGAACTC
TCAACTCGATCCCACTTTTCGACTTATATTCAAAATCATCTTGaacattt
ttgccaattttaaatATTGTTTTAACCAGCTTTCTTTCTCTAGATATCCA
TAAAATGTAGGGACCGCCAAGTATAGTAGACCTTATTTACAAGATACTTT
TAAATCTAATCTTTAATCCTAGATAACTGGCATTTTCGTCAGTTGATCCT
CCCTTTGGAGGGagttttatatattataaattttataaatgGACTTAAAA
ATTGATAACAAAAATACATGTTCCACAATATTTAACATTTCATACACCCA
TAGTATAACAAAGGTAACAACAAATTTTGCATGTTATGACTATCAAGATT
CAGAATTCGAGATTGATCATATCGAAAATTCTTCAAGATGTGATTTAAAA
GTGCAACAATTTGACATGAAGATGTTAATTATTACAATTAGATACACGTT
GGTAAAGTTTCTTCTTCCAAGCAACGGCAACTGCCAACAAAACAACAGCA
GGAATCACAACTGCTAGAGCGATAACCGTAGGAGAGGGTCCTTCACCTTC
ACCTGCACCTTTATCTTTATCTTTATCCGTAGGTGACCATTCATCTTTAA
ATAACTCCACCTTGGCTCCACACCTGCCTTCCTCACAACACGCAAAGCAT
TCAGTTACTTTTCCATCCGTCAAAGGTCGGTGTGTACAATTATACCATCT
CTCGTCTTTTTTATCACCACATGCTACTTTTGCCCTTGGACGACATTCAC
GCATGACGGAATTAAAACCGCTGTAAAAATCCTCTTCAGTTTGACTTGCT
TCACTTCTCTTGAATACGAACATAGACTGGCAAACTTCATCATCACTGCA
ACTCTTGGTCAAATTTTTCGTGTCCACCAAAGCTTTACAACCAGGATGAG
GCAATTGATATCCTTCGTAATAACTACACATGTAACAATCAAGACCGATG
GCTCCTAAAAATCAATAAGTTTCAATTAAACCGTACATcatgtgcccaag
ttcaggagttgccataaagccattatggtaataaccgggagggcacattg
ctatacattgtaagtttcaattaaaactttttcaGTGGGATTTTTTAATC
CAAACTTTTCTTTACTTTAGCTTTTCTTGTGACAAAAGGTTCATATAAAA
ATTGATGCGAGATCAGTGAGATAGGGGACGAAATAAGTAGTAAATATAAT
TATAGTTAAAGTCCTACTTACctttaaaaaagtaaagtaacAACAAAATA
GCCAgaatattgaaataaaacatCTTGACAAAACCAGTCAGTTTACACTT
TTAAACACAGATTTCATAATACGTGACAAACCAACCAGATTAACCTCATA
ACTGTTCATAAAATGCTAATATGTTTTAGTCTGTTTTactataattttca
ttttcaatgtttactttttgctgaaaaaagaaaaaatatatattaagtAA
TCTGAAGTTtatc Run BLAST on NCBI transcript from alignment at scaffold_58:151196..153968- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070907 ID=TCONS_00070907|Name=TCONS_00070907|organism=Clytia hemisphaerica|type=transcript|length=2773bp|location=Sequence derived from alignment at scaffold_58:151196..153968- (Clytia hemisphaerica)
NNTTTGGTGCACCCGGTATATTTCGCCATCAGTATATAGAATAAGAAATC
ATAGCATGGATCTCCAGGCTAAATGATAAGCAGAAGAGCTCCTAAATTTT
CCTAATTTTGGCATGTACTAATTTCGTAGTGAGAAAACTACAAAAGTACT
CTATTTTGAGGAAAAATGATTTCGGTGAAATTAATTTTCGTGATAATAAG
TTGCCAATTAACGCATACACGGTTTTTTATAAAAATTAAACATGGCCAAA
ATCTTAAGTACAAGTTAAGAACATTTTAAGGCATCGCAGACTCTAAAACA
GCCGATTTCTTGGCAAAATGGACTAAAATACTCTAAAAATGGTGAAAATA
AGAACATGTTAAGAACTTTTTTAAGCTTAAAACTCAAAAAGTTAAGAAGA
CCGGAAGGCCTCAAAAAGCTCTTATAAAACAACGCATTACATATTGGAAA
AGCTCACCAACAGGTTTGGATGTTACTTTTCCATACTTGGGTAAGGGTTA
AAAGGGATGAATGTCATTTAAAAATAAAACTCTTTACAAAATATAATTTA
TCATCTACTTTGTACAAAACTTTAATCAATACCCCTGTAAAGAATTTTCT
TACAAAAAATACTTAAAAATTAGTTGTAAAGTTTCCTGGAATGGAACGCA
AGGAAAATCCGGGCTTTTTTAACTCAATGACTTTTTCACCGGTTGAACTC
TCAACTCGATCCCACTTTTCGACTTATATTCAAAATCATCTTGAACATTT
TTGCCAATTTTAAATATTGTTTTAACCAGCTTTCTTTCTCTAGATATCCA
TAAAATGTAGGGACCGCCAAGTATAGTAGACCTTATTTACAAGATACTTT
TAAATCTAATCTTTAATCCTAGATAACTGGCATTTTCGTCAGTTGATCCT
CCCTTTGGAGGGAGTTTTATATATTATAAATTTTATAAATGGACTTAAAA
ATTGATAACAAAAATACATGTTCCACAATATTTAACATTTCATACACCCA
TAGTATAACAAAGGTAACAACAAATTTTGCATGTTATGACTATCAAGATT
CAGAATTCGAGATTGATCATATCGAAAATTCTTCAAGATGTGATTTAAAA
GTGCAACAATTTGACATGAAGATGTTAATTATTACAATTAGATACACGTT
GGTAAAGTTTCTTCTTCCAAGCAACGGCAACTGCCAACAAAACAACAGCA
GGAATCACAACTGCTAGAGCGATAACCGTAGGAGAGGGTCCTTCACCTTC
ACCTGCACCTTTATCTTTATCTTTATCCGTAGGTGACCATTCATCTTTAA
ATAACTCCACCTTGGCTCCACACCTGCCTTCCTCACAACACGCAAAGCAT
TCAGTTACTTTTCCATCCGTCAAAGGTCGGTGTGTACAATTATACCATCT
CTCGTCTTTTTTATCACCACATGCTACTTTTGCCCTTGGACGACATTCAC
GCATGACGGAATTAAAACCGCTGTAAAAATCCTCTTCAGTTTGACTTGCT
TCACTTCTCTTGAATACGAACATAGACTGGCAAACTTCATCATCACTGCA
ACTCTTGGTCAAATTTTTCGTGTCCACCAAAGCTTTACAACCAGGATGAG
GCAATTGATATCCTTCGTAATAACTACACATGTAACAATCAAGACCGATG
GCTCCTAAAAATCAATAAGTTTCAATTAAACCGTACATCATGTGCCCAAG
TTCAGGAGTTGCCATAAAGCCATTATGGTAATAACCGGGAGGGCACATTG
CTATACATTGTAAGTTTCAATTAAAACTTTTTCAGTGGGATTTTTTAATC
CAAACTTTTCTTTACTTTAGCTTTTCTTGTGACAAAAGGTTCATATAAAA
ATTGATGCGAGATCAGTGAGATAGGGGACGAAATAAGTAGTAAATATAAT
TATAGTTAAAGTCCTACTTACCTTTAAAAAAGTAAAGTAACAACAAAATA
GCCAGAATATTGAAATAAAACATCTTGACAAAACCAGTCAGTATCCTTTT
TTGTATAAAAGAGAAACTTCGTCAAAATACGAAACTATTCAACAGAATGA
GTTACATTCTTCTCTGAACTCGCATCAACACGTTGATGAAAAAGGTTTCA
TATTTCTAAACAAAATGTTATATTATTACCAGTCAAATTAGAAAACGAGA
GAGGTTAATGTTAAGAGTGTATATCAATCAATTCACTGTTATCACTAATT
CAAGACCTAATACTTTTCGATTTGATGGGTCTAGCCCTAATATTTGAATG
TAATCATTTTGTAAAATAATTTTTAAATAATTAAATAAATCACTCCTTCC
ACACATCTTCAGTAAAAAACAGAAGCTGCTTTTGGTTCATTTTTTGAAAT
TTATTTTTAAACGTTTCGGCCTCAACAGAGTACCATCGTCAGTAAAAAAA
TTTGTTGTATTGAAAAATGAATTAAATGATTGTTCAAAAAGTATCCTAAT
TTTTAAAAGACGAAAAACTTTTAGTAAAATCAAACAGGAATATAATGGAA
ACTTTCAGACACTAAAAAGGCAATAACAACAAAAACTTGAAAAAGTGCTG
TCACTTACAGCTTTCACAATGCAAGCTTATACACATTTTGAATACATTTT
ACTTACACTTTTAAACACAGATTTCATAATACGTGACAAACCAACCAGAT
TAACCTCATAACTGTTCATAAAATGCTAATATGTTTTAGTCTGTTTTACT
ATAATTTTCATTTTCAATGTTTACTTTTTGCTGAAAAAAGAAAAAATATA
TATTAAGTAATCTGAAGTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070907-exon-scaffold_58-1575043694:151977..153968 | TCONS_00070907-exon-scaffold_58-1575043694:151977..153968 | Clytia hemisphaerica | exon |
| TCONS_00070907-exon-scaffold_58-1575043694:151196..151366 | TCONS_00070907-exon-scaffold_58-1575043694:151196..151366 | Clytia hemisphaerica | exon |
| TCONS_00070907-exon-scaffold_58-1510915933:151977..153968 | TCONS_00070907-exon-scaffold_58-1510915933:151977..153968 | Clytia hemisphaerica | exon |
| TCONS_00070907-exon-scaffold_58-1510915933:151196..151366 | TCONS_00070907-exon-scaffold_58-1510915933:151196..151366 | Clytia hemisphaerica | exon |
| TCONS_00070907-exon-scaffold_58-1491911889:151977..153968 | TCONS_00070907-exon-scaffold_58-1491911889:151977..153968 | Clytia hemisphaerica | exon |
| TCONS_00070907-exon-scaffold_58-1491911889:151196..151366 | TCONS_00070907-exon-scaffold_58-1491911889:151196..151366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:151196..153968 - |
Blast
The following BLAST results are available for this feature:
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