TCONS_00070903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070903
Unique NameTCONS_00070903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070903 ID=TCONS_00070903|Name=TCONS_00070903|organism=Clytia hemisphaerica|type=transcript|length=1289bp
aaatggtttGCTCCTTGTAAAGCTGTgaTATAAAGAAGAATAAGAATGTC
TGAATCATACGATACAGGCCCCCCACCAGCAGCGGCCCAATCATCTGATG
GAGGGATCAGGCTGAATCCTGGTTTCATTAGGACACCACCTGGTCTCTTA
CTGCTGATCAATCTAgtgttattatttttgtcaTGGTGCATAATGGCAGG
CTGGAGAGGAGAAGTACATTGGACTgtggaaaatgattttgaaggAGGAA
GTGGATTTTATTTGGCTACAACACTTATTCCATGGTTTATCCTTCTCGTA
GTTTTTGTTCTCATGTTGTTCAATATCCACACGAAAATTCCAATCAATTT
TCCCATAACGCTAATGCTTAACTGCGTTATATGGGCAGTATTACTGTTTA
TTGCTTCGTGTATTGTTGGAGCGAAAGCTGATAAATGGAATGGTCATAGT
TCCTTGTGTGAAGTTTATGCTTGTAATCATCTCGGAGCTGCTTGTGCTTT
TGGAATTTTCTCGGTGGTTGGATTAGGAGTTCAAGCATTTTTACACTTCC
GAGAATGGAGAAGTCCTTGAGCATGAAAATCCAACACTAAAAATCAATCA
CCAGATTTTATGACAATACTATGAGTTCATATTTTTTTTGAGAACAAAAT
TTGAATGagaagaaataaaaagaagatgGTGTTTGAAATTTAAAGACATT
TTGTAATCAGTAACACAAAAATCTTTAGAAATGATTCAAATGGACACATT
AGTCGTAGATTTTGTAAATTTAGGGCACATTTTATTTAGGAAAtcttttt
gttgtatttatGCAGTCGTTGTGTTCGTTCGAAAATTCACTTCAATCAAT
TAATATTGTATATTTAACAAATTATTGTTAGGGAAATTGTAAACATGCAA
GACAAGGCTAATCTTTCGTATTGACGAAAAATTTATCTCTTTAATTGCCA
GCTATTTTTCAAGGGCccaattcttaaattttcagtaCCAGCGCAGGACG
GGATGAAAGCTGTAATATTTTGAACACCCTTGTCCCAGATAAAGTAGTAT
TTAGTcacttaaaaaatgaaaaaattttcacacttttttttcGCAAACAT
TATGTGCCAGCACGAATTTATAACCAGATTTACCCTTAGCGTTACATTTA
CTTAACTTCATCGACATCACATTTGAAATTGGGCTACTATTTCTGAGTGT
TTTCTAAGTTGGTCCCCTCAAACCGGAGAATTGGGAAGGGTAATTTTTGA
CGTTTATAAAAGTGCTTGAAATGGCATTTTCAATTTAag
Run BLAST on NCBI

transcript from alignment at scaffold_58:122691..126984-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070903 ID=TCONS_00070903|Name=TCONS_00070903|organism=Clytia hemisphaerica|type=transcript|length=4294bp|location=Sequence derived from alignment at scaffold_58:122691..126984- (Clytia hemisphaerica)
AAATGGTTTGCTCCTTGTAAAGCTGTGTATGTTGTTCAAATTTATTTTAT
GTGTTAAAAAGTTTATTCTTATCTTTCCTTGAATGAAAACATATTTTCTT
TGCTAAAATATTAATGGGGAATCAAAGAGGAGAATGTTAGAAGAGTGAGT
AGGGAACCCTAACAGCCAGATATTAGGGTTGTTTGAAAGAGAAATCTTGA
GAGTTTTCTGTTCGTGCTGTTTGATTTTTCATGATAAGTGGGTTTCCTTC
TTTAGTAAAAGATTCAGATTTGATTTAAACCGAACTTTTTTTTGTTCAAG
AGTGGTGAAAGTTTGTATGGTATAAATGAAAGGGCTGAAGGCTAAATTTT
CTAAGAGCTTCAGAGTGTTTTGTTGAATTTTATCGGTCTTTTGGAAAAAA
AAACACTCATCCCAATTCTTATGACTTGGGTTTCATTTCTATTACATTGA
TGATCTTAACTTGGAAGGAAAAATTTATACACATCACACACGATCATTAT
TTTACTAGCAAAGAAAACTTCATTCAGAAATTTGCTGACGGTGTTAAAAA
TTTAATCGTAAGGTTTTGTATAAAAAATATCTAGAATAAGTTCATTATAG
CTTTTGAAATTCCCTTTCATTCATATAATCATACGAGTTTTTTAGAGTTT
TTTTATATAGTAAAAAAATATTTTTCGAATAGATACCTTACGATATTGCC
CTGGTACTGCTTAATAGTAAATTTGAAAATTATTAGAATTAACAACAATT
TCAAAACGTTTCAAAAGAATTATGTGTAATTTGATCTGGTGTTTCCAATT
TTTTTTTAGGATATAAAGAAGAATAAGAATGTCTGAATCATACGATACAG
GCCCCCCACCAGCAGCGGCCCAATCATCTGATGGAGGGATCAGGCTGAAT
CCTGGTTTCATTAGGACACCACCTGGTCTCTTACTGCTGATCAATCTAGT
AAGTCAACATTTTTGGCTGGAACTGATAATCAACGTTTTTTGAAACCCAA
CAGAAATTTTGAGCTTTAATGGCAATCAATAGAATTTGAAATTCCCACTT
ATTTAAAACACTCTTTTTATTCTATTTTCATTGGTACTTAGCCCCTTCAA
GTGTTCTCTATAAATGGTCCCGAGTCACTGAGACCATAGTCCGTATAAAA
AACCCTGGTCTGGAAGCCTTTTGTTTCTTTCCATTGTTTCTTACTTGAAC
TTGTGTCGAGAAATTAGTTTGTTTTGCTCACTTTTTAAACATGTGATAAA
TCTTAAACCAATCACAAGAGGAGTACTTGGTAACGTGATCAAAAACTGAG
CAAATCGATTTTTATCTTTGATNAAAAATGTGATTAAATCTTAAACCAAT
CCCAAGTAAGTAAGAGTAGTACTTGGTAACGTGATCAAAAACTGAGCAAA
TCGATTTTTATCTTTGATATTAACAAAGGGAAAAGCTAACAAAAAGTTAA
AACAATAAGCTTTCAGACCATAGTGTTTTTTTATAAGGACTATGCTGAGA
CAGGGATAAGGAATATTCAGGTTCTGTAAGCCCGTTTCTGGTGCTGATAA
TTTTAAAGTTTCCCTGATCGCACAAACTCTTTCCTATGCCCTTAGTTTGC
TTTTTTATGACTGCGATAGCGAAGAGAGATTGTATCATACACTTATCATA
CGTAAAATCAAAATAGTGGTGCAAGTGGCTCTTAGTACGAGATATCGTAA
AATATGCTTACTCAGCAAAATTTATTGATTTGAAAACCCAAATATCACAT
GATCTCGGGATCAGAACACAGTTAGCGTTTTAAAAACAATCCCTTTATCT
TTTTTTTTAAATACTGTTTGCAGGTTATTAGTCGTAAAAGTTCTAGATGG
TTTGCACAAAAATTGATTTATATAATGATAAAATTTTAATAAACGGGGGG
TCCTAGTTAGAGAGATCAGGAAATTTGAAAAATAGAGAATTCTTATAAGT
TCCTGAGGAGAAGGGACTAAAAAGAATTACAAAATTTCAATTAATAACCC
TTATGTCCATTATTACTTAAGTTAAATTCATTTTCCCCAGGTGTTATTAT
TTTTGTCATGGTGCATAATGGCAGGCTGGAGAGGAGAAGTACATTGGACT
GTGGAAAATGATTTTGAAGGAGGAAGTGGATTTTATTTGGCTACAACACT
TATTCCATGGTTTATCCTTCTCGTAGTTTTTGTTCTCATGTTGTTCAATA
TCCACACGAAAATTCCAATCAATTTTCCCATAACGGTGAGGTTCAGTTCA
TTTTTGCTTAGCAGACAAAGAGACAGAGAGAGAAAGCGTAGAGGCATCCG
GCTACAATCAACATCGAGAATTTTGCCTATTTCCTCGTTTTTCGAAATTT
TAAGTTCGTGCGAGAAAGTTGCTTTTGGGCTATCTGTTAAATACAATCAA
ATATTTCCATTTGGAAGGAGTTTATAGACTTCCAGGTTATAATCTGAGCC
TTATTGGACCATCTTTGAACTTTTGGATCCTCAGATCGTTGGATTGTTAA
ATCTCAGAGTTAAAACTCAACCCTTCCAACCTTTCTAGAATTTTAAAGAC
TCGCGGTTTTTTTACACAAACAATCTCTAGAGACTCTAATGCTATGATTT
TTCGAATCCTTTTATTTTCCTCCTTTCTTTAGCTAATGCTTAACTGCGTT
ATATGGGCAGTATTACTGTTTATTGCTTCGTGTATTGTTGGAGCGAAAGC
TGATAAATGGAATGGTCATAGTTCCTTGTGTGAAGTTTATGCTTGTAATC
ATCTCGGAGCTGCTTGTGTAAGTCTGAACTGGATTTTAAATTTCATTACA
TCCACTAAATCAATTCCCAGGGGGTGGGGTACTTACAGTAAGCAAATGTA
GGGTACGATATGTGTCGCCTAAGGGTGCCTTTTTTAGAAGTCACAACCCT
AGTAATCCCCTCCCCCCCCGGGGGCATCCATCTATTTTAGACTCTAAGGG
ATCTTAGCTGTCCATTTTCTAACTATCTTTTATGTGGGGATTTTTCAATT
GTTTAGCTCAAAGTATAGTAGAAAGTTATATTGTCTTTCCCAATGCAATT
CTAGGTAGAACGCAATGAAATAGTGACATTTCTCTTTTTCACCGGGGCTG
ACCTATCTAACAATACAAATTCTATTTTAAATATTTCTGAAATTTTCTCA
GGTTTATGATGTTTAGACCACAATATCAAAATATCCCTGAAACAGGCTGG
TTGGGCTCATAGATTTATAAAACTCAAAGGGCTAATTGTCAGGCTTTAAG
CCATCGCAGGCAAAAAAAAGTTAATATCGGCAAAAATATTGTTGCTATTG
TTTTCGAAAACCCACGAAAGCTTCTTATTGGTCAAGCGCTGAAATTCTAT
TGTAATGTCACGCGACTTAGGTAGAATTTCCTACCTAACCACGGGACACT
TTCAGCAAAAGTACGCCATCTAGTCCTTCGGGCATTATAAATCTATGGTT
GGGCTTTTTGAGCAAACATGTTAAATTATGAATAACTTTTTCTTTTACAG
GCTTTTGGAATTTTCTCGGTGGTTGGATTAGGAGTTCAAGCATTTTTACA
CTTCCGAGAATGGAGAAGTCCTTGAGCATGAAAATCCAACACTAAAAATC
AATCACCAGATTTTATGACAATACTATGAGTTCATATTTTTTTTGAGAAC
AAAATTTGAATGAGAAGAAATAAAAAGAAGATGGTGTTTGAAATTTAAAG
ACATTTTGTAATCAGTAACACAAAAATCTTTAGAAATGATTCAAATGGAC
ACATTAGTCGTAGATTTTGTAAATTTAGGGCACATTTTATTTAGGAAATC
TTTTTGTTGTATTTATGCAGTCGTTGTGTTCGTTCGAAAATTCACTTCAA
TCAATTAATATTGTATATTTAACAAATTATTGTTAGGGAAATTGTAAACA
TGCAAGACAAGGCTAATCTTTCGTATTGACGAAAAATTTATCTCTTTAAT
TGCCAGCTATTTTTCAAGGGCCCAATTCTTAAATTTTCAGTACCAGCGCA
GGACGGGATGAAAGCTGTAATATTTTGAACACCCTTGTCCCAGATAAAGT
AGTATTTAGTCACTTAAAAAATGAAAAAATTTTCACACTTTTTTTTCGCA
AACATTATGTGCCAGCACGAATTTATAACCAGATTTACCCTTAGCGTTAC
ATTTACTTAACTTCATCGACATCACATTTGAAATTGGGCTACTATTTCTG
AGTGTTTTCTAAGTTGGTCCCCTCAAACCGGAGAATTGGGAAGGGTAATT
TTTGACGTTTATAAAAGTGCTTGAAATGGCATTTTCAATTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044087XLOC_044087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070903-exon-scaffold_58-1575043694:126959..126984TCONS_00070903-exon-scaffold_58-1575043694:126959..126984Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1575043694:126037..126175TCONS_00070903-exon-scaffold_58-1575043694:126037..126175Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1575043694:124750..124944TCONS_00070903-exon-scaffold_58-1575043694:124750..124944Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1575043694:124218..124352TCONS_00070903-exon-scaffold_58-1575043694:124218..124352Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1575043694:122691..123484TCONS_00070903-exon-scaffold_58-1575043694:122691..123484Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1510915933:126959..126984TCONS_00070903-exon-scaffold_58-1510915933:126959..126984Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1510915933:126037..126175TCONS_00070903-exon-scaffold_58-1510915933:126037..126175Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1510915933:124750..124944TCONS_00070903-exon-scaffold_58-1510915933:124750..124944Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1510915933:124218..124352TCONS_00070903-exon-scaffold_58-1510915933:124218..124352Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1510915933:122691..123484TCONS_00070903-exon-scaffold_58-1510915933:122691..123484Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1491911889:126959..126984TCONS_00070903-exon-scaffold_58-1491911889:126959..126984Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1491911889:126037..126175TCONS_00070903-exon-scaffold_58-1491911889:126037..126175Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1491911889:124750..124944TCONS_00070903-exon-scaffold_58-1491911889:124750..124944Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1491911889:124218..124352TCONS_00070903-exon-scaffold_58-1491911889:124218..124352Clytia hemisphaericaexon
TCONS_00070903-exon-scaffold_58-1491911889:122691..123484TCONS_00070903-exon-scaffold_58-1491911889:122691..123484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:122691..126984 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.071412	2.98025	0	0.11754	0	0	0	0	0	0	10.7745	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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