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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070898 ID=TCONS_00070898|Name=TCONS_00070898|organism=Clytia hemisphaerica|type=transcript|length=1715bp
TTTAGAagtaaatttacaaaaatacaacCCGAGATAACCTACACCAATAG
TGAAAATGGCCGAAGCACCGCCACCCTACGATGTTGACCCTCAACCGACA
CAAGGATCAAGTGATGAAGGTATCAGATTGAACCCTGGCTTCATAAGAAC
ACCTCCTGGTTTGTTACTCGTCATCAATCTTGTTCTGTTATTTTTGTCAT
GGTGCATAATGGCAGGCTGGAGAGGGGAAGTACATTGGACTGTGGAAATT
CACTTTGAAGGAGGAAGTGGATTTTATTTGGCCACAACACTTATTCCATG
GTTTATCCTTCTCGTTGTTTTTGTTCTCATGTTGTTCAATATCCACAAGA
AAATTCCAATCAATTTTCCTGTAACGTTGATGATTAACTGTCTTCTGTGG
GCAGTATTGTTGTTTATTGCATCATGTGTGGTAGCTGATAAAGCTCGTAA
ATGGAATGTGAATGGAGACGCTTGCGATTTTTACAGTTGCAATCATCTTG
GTGCTGCAGCGGCTTTTGGATTTTTCTCAGTGGTTGGATTAGGAGCACAA
GCATTTTTACACTTCCGAGAATGGAGAAGTCCTTAAATTTTGGCACAAAA
ATCAAACCAATACTAAGCAGAACACAAATATGCCAGAACACATGGTTAAC
ATAGATCTaagttttgtaaattttgaaacgttaacatttttcttttgtaa
caactttatttttttcatatatctGTGATAttcatgaaaatgttttacgg
AAGCAGCCGAAAAAGACCGGGTGTTTGCCactcattttgaatttaaacaa
tgaaactggtggcaaacgcccggGCTATTTTGGGTttttccgtataaaac
attacatcGTGAATATTATGAATACAATAGTGAAGTTAAGTAGATCGGtc
aaatcacgacgacgaacaaaaatttaacaggctagtgagtttcaaccaat
caaatttcgtattttcactagcctattaaatttttcgtccgtcgtcgtNT
ATGGTTAACATGGATCTaagttttgtaaatttttgaaacgttaaattttt
tcttttgtaacaacttttttttttcaaatatccgTAATAttcatgaaaat
gttttacggAAGCAGCCGAAAAAGACCGggtgtttgccactaattttgaa
tttaaacaatgaaactggtggcaaacgcccggGCTATTTTGGGTTTTTCC
GTATAAAATATTACAtggtgaatatcatgaatacaataGTGAAGTTAAGT
AGATCGGtcaaatcacgacgacgaacaaaaatttaacaggctagtgagtt
tcaaccaatcaaatttcgtattttcactagcctattaaatttttcgtccg
tcgtcgtgattatcctggttgATCATTAGTTTattcgccaacaaaaatca
taaaaaaagaaataagtttatacctaaactagtTGATCATgatgttaaaa
aattaaatgaactACTGTACACACATTCtttataaattgaataaaaatgg
aCCCTGAAATGGTCCAAAAACTGGACTTAGACGTCGGTGACGCAAATCAG
TGTTTAGATAATGACATTGAAAGGAATTCCAGTACCTTTTAGTCGTAACT
CTTTTTACTCTTTTTGAATACAAATTAAATCACCACAAACGTCAACGTTA
AGCCAGTCTTCTTCAGAGTTCTCTCGCCTCAAACTCACAGATATTGTTCT
TGGTGTGGATTGGTT Run BLAST on NCBI transcript from alignment at scaffold_58:117145..121709- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070898 ID=TCONS_00070898|Name=TCONS_00070898|organism=Clytia hemisphaerica|type=transcript|length=4565bp|location=Sequence derived from alignment at scaffold_58:117145..121709- (Clytia hemisphaerica)
TTTAGAAGTAAATTTACAAAAATACAACCCGAGATAACCTACACCAATAG
TGAAAATGGCCGAAGCACCGCCACCCTACGATGTTGACCCTCAACCGACA
CAAGGATCAAGTGATGAAGGTATCAGATTGAACCCTGGCTTCATAAGAAC
ACCTCCTGGTTTGTTACTCGTCATCAATCTTGTAAGTCTTTTTTATATAA
GAACATTAGTCTCAATTTTGACGATTCTAACAGAAAATATTTTGAATGAT
CGAAAGGGCTATGAGGATTTGACTTCAAAAAATGACTATAAAAATCTTGA
CTTCATATATTTTTTTAATCAAATGTTCATTTGCTCTCAAGGTCCTAAAG
CCTATACAGTATCTGGACACTTACCTATTTTAAAAATTTCTCAGTGCGCA
TTGACGCTACTATGAGACACCCCTGTGTCACAGACCTGCTGGACACTAGA
AAATTTTGCCAAAATCGCATCCCAGTTGGGATTGACTTTGATTTTATCTC
TATTCGAAATTCAATGTAAAAATTTGCACTCCAAAACCATCCCCATTGGA
CTTTTTTAGCTTTAAAACTATAGAATTTCCCCATTGGGATTTCGATAGAA
ATTTTCTATCACTTCTATGTTCCAAAGCCGGGTGTTATAAGATATTTCTA
AGGAGAATAATCTAAAGGATAAAAGACTTGGAAAATGGAAAAGAAAAATG
TGACGAACAAGCTACAGGCTGAATGGACCTACCTGAAGATTGATGTAATA
AGAAGATGGGAAAAAATGACAACAATAGCAAAAAAAGGCAGACTAAAAAT
CAAGAGAGATACAAAAGATCTGAACGCAGGTTTAAAATCATCAAGGTGAT
TATTCTCCTTGGAAATATCAACGATGCAGAGCTTATTTCTATATGGCTTT
GTACCGCTGTGGGGGACTTTCGAGGGTGTAAAAAGGACCCTTTTCACAGA
CCCGGTAGGAATTTTGGGAATTTCCGCTGGGAGTTTGATTTCCATAGTTT
GCAGTGAGGGGGTCCCACCAGGTCTGTGAGAAAGGGGTGTCTAATTGCTC
GCACATATGCGGCACCATCTAAGTACCCACCTCCCCCCAGGGAAAGCTGG
TGTCCTCATTGAAATTCTTATAGAGAGTGACCATAATTTCCAGTTCACAC
AGCAGTACACTTAGAAGTTTGAATTCTGTTGAAGATTTTCAAATTTGATT
TCTCAGGTTCTGTTATTTTTGTCATGGTGCATAATGGCAGGCTGGAGAGG
GGAAGTACATTGGACTGTGGAAATTCACTTTGAAGGAGGAAGTGGATTTT
ATTTGGCCACAACACTTATTCCATGGTTTATCCTTCTCGTTGTTTTTGTT
CTCATGTTGTTCAATATCCACAAGAAAATTCCAATCAATTTTCCTGTAAC
GGTGAGTGTGTCATAAGTTTTTTATTCAAACAAAAATGAGGAACTTTTTC
GCGTACAACTCCTTCAAGGAGTGTCGCTTTATTGACAGACATTTTGACCA
AAATGACATCATTAATTTTGGCATGTACTATTATTTTAGGATCGCTGTTG
AAAAAGAAAGAAACTGTATTCTAATTCGTAATCAATTTGAGTTGCTTATA
ATAAACTTATAAAACTATCGATAAGGATCTGCAACATACCTTAGGGGAAG
AAATTTTGGTGGATATGGCGGATGTTTCCCGTCATTTACTAAATTTAAAT
TATTGTATTCCTTCCCTCAAATATGTCCTACCTTAAGAGAACTTTTTTTT
TTGGCGAGAACTAATTTTGACGAACGGTCGATTGAAATTCTTTTTTTCAA
TTTTGGCGAGAACTAATTTTGGCGAATCAACGACTTATTAAATTTTGACG
ATAACTTATTTTGGCGAATGACAGCGTAAATCTGTTCTATTTTGCCTTAT
TTGAAGCTTTTTTTGTGAAGTTATTTAGGCAAAATACCAAAATTCTTAAT
TTTGGCGAGAACTAATTTTGGCGAACCAGGATTTTTTTCAATTTTAGCGA
GAACTATATTTGGCGAATGGCCTAAAAAATTAATTTTGGTGGGAACTAAA
TTTGGCGAATTTCGAGTTCGCCCGCCAATTTCGCCAAAACTAGTTCTCAC
CAAAATAAGTTCCTTTAAGGTATTTCAGATATTTAATGGCGGATTTTGCT
AAAAGTATCCTTCATCCGCCAAATTTAATTTTTCAAGCCATCCACCAAAT
GANTTTCGCCAAAACTAGTTCTCACCGAAATAAGTTCGCTTAAGGTATTT
CAGATATTTAATGGCGGATTTTGCTAAAAGTATCCTCTTCATCCGCCAAA
TTTAATTTTTCAAGCCATCCACCAAATGAAATCCCTCCAAAAAAATGCAG
TATATACAGTATATATATATCGAGTAGTATACAGTATCCATATCGAACAC
ACTCAATTAACTGTACTAAATGAATCTTCAACTTCACTGTTATAGTTGAT
GATTAACTGTCTTCTGTGGGCAGTATTGTTGTTTATTGCATCATGTGTGG
TAGCTGATAAAGCTCGTAAATGGAATGTGAATGGAGACGCTTGCGATTTT
TACAGTTGCAATCATCTTGGTGCTGCAGCGGTAAGTCGTTCACTGATAGA
ATCAAATTACCCACACCTCCTGCATAAGATTGTAAGCGCTTGCTATAGTC
ATTTGTAATTTTACTGCAACAATTTTATTGCATTGCAAAAGCATTTTAGA
ATTTGCCGTGTTGAAATATTAAAATTTCTTACGCACTTGCAACGCAATGT
AAATTGCATTGTAACCGTCTTTAAAATCTTTTCAGTGTAGCCTTAGCTTT
ATCAGAAAAATTTAAAAACTAGTATCAACTACCCCGAAGTGGGGTTGAAT
CTGTTTTTACTCTGCAAAGTAAAACGATATCAAATGTATCTGCCACTTAG
ACAATAAAAACGTTTACAAATCACTAACCCAACTAAACGCATTGCATTAA
TTAGTTTTTTTCTCTTTTACAGGCTTTTGGGTTTTTCTCAGTGGTTGGAT
TAGGAGCACAAGCATTTTTACACTTCCGAGAATGGAGAAGTCCTTAAATT
TTGGCACAAAAATCAAACCAATANAAAGCATTTTAGAATTTGCCGTGTTG
AAATATTAAAATTTCTTAAGCGCTTGCAACGCAATGTAAATTGCATTGTA
ACCGTCTTTAAAATCTTTTCAGTGTAGCCTTAGCTTTATCAAAAAAAAGA
TTAAAAAACTAGTATCAACTACCCCGAAGTGGGATTGAATCTGTTTTTAC
TCTGCATAGTAAAACGATATCAAATGTATCTGCCACTTAGACAATAAAAA
CGTTTACAAATCACTAACCCAACTAAACGGATTGCATTAATTAGTTTTTT
CTCTTTTACAGGCTTTTGGATTTTTCTCAGTGGTTGGATTAGGAGCACAA
GCATTTTTACACTTCCGAGAATGGAGAAGTCCTTAAATTTTGGCACAAAA
ATCAAACCAATACTAAGCAGAACACAAATATGCCAGAACACATGGTTAAC
ATAGATCTAAGTTTTGTAAATTTTGAAACGTTAACATTTTTCTTTTGTAA
CAACTTTATTTTTTTCATATATCTGTGATATTCATGAAAATGTTTTACGG
AAGCAGCCGAAAAAGACCGGGTGTTTGCCACTCATTTTGAATTTAAACAA
TGAAACTGGTGGCAAACGCCCGGGCTATTTTGGGTTTTTCCGTATAAAAC
ATTACATCGTGAATATTATGAATACAATAGTGAAGTTAAGTAGATCGGTC
AAATCACGACGACGAACAAAAATTTAACAGGCTAGTGAGTTTCAACCAAT
CAAATTTCGTATTTTCACTAGCCTATTAAATTTTTCGTCCGTCGTCGTNT
ATGGTTAACATGGATCTAAGTTTTGTAAATTTTTGAAACGTTAAATTTTT
TCTTTTGTAACAACTTTTTTTTTTCAAATATCCGTAATATTCATGAAAAT
GTTTTACGGAAGCAGCCGAAAAAGACCGGGTGTTTGCCACTAATTTTGAA
TTTAAACAATGAAACTGGTGGCAAACGCCCGGGCTATTTTGGGTTTTTCC
GTATAAAATATTACATGGTGAATATCATGAATACAATAGTGAAGTTAAGT
AGATCGGTCAAATCACGACGACGAACAAAAATTTAACAGGCTAGTGAGTT
TCAACCAATCAAATTTCGTATTTTCACTAGCCTATTAAATTTTTCGTCCG
TCGTCGTGATTATCCTGGTTGATCATTAGTTTATTCGCCAACAAAAATCA
TAAAAAAAGAAATAAGTTTATACCTAAACTAGTTGATCATGATGTTAAAA
AATTAAATGAACTACTGTACACACATTCTTTATAAATTGAATAAAAATGG
ACCCTGAAATGGTCCAAAAACTGGACTTAGACGTCGGTGACGCAAATCAG
TGTTTAGATAATGACATTGAAAGGAATTCCAGTACCTTTTAGTCGTAACT
CTTTTTACTCTTTTTGAATACAAATTAAATCACCACAAACGTCAACGTTA
AGCCAGTCTTCTTCAGAGTTCTCTCGCCTCAAACTCACAGATATTGTTCT
TGGTGTGGATTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070898-exon-scaffold_58-1575043694:121529..121709 | TCONS_00070898-exon-scaffold_58-1575043694:121529..121709 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1575043694:120309..120503 | TCONS_00070898-exon-scaffold_58-1575043694:120309..120503 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1575043694:119130..119264 | TCONS_00070898-exon-scaffold_58-1575043694:119130..119264 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1575043694:117145..118348 | TCONS_00070898-exon-scaffold_58-1575043694:117145..118348 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1510915933:121529..121709 | TCONS_00070898-exon-scaffold_58-1510915933:121529..121709 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1510915933:120309..120503 | TCONS_00070898-exon-scaffold_58-1510915933:120309..120503 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1510915933:119130..119264 | TCONS_00070898-exon-scaffold_58-1510915933:119130..119264 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1510915933:117145..118348 | TCONS_00070898-exon-scaffold_58-1510915933:117145..118348 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1491911889:121529..121709 | TCONS_00070898-exon-scaffold_58-1491911889:121529..121709 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1491911889:120309..120503 | TCONS_00070898-exon-scaffold_58-1491911889:120309..120503 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1491911889:119130..119264 | TCONS_00070898-exon-scaffold_58-1491911889:119130..119264 | Clytia hemisphaerica | exon |
| TCONS_00070898-exon-scaffold_58-1491911889:117145..118348 | TCONS_00070898-exon-scaffold_58-1491911889:117145..118348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:117145..121709 - |
Blast
The following BLAST results are available for this feature:
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