TCONS_00070893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070893
Unique NameTCONS_00070893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070893 ID=TCONS_00070893|Name=TCONS_00070893|organism=Clytia hemisphaerica|type=transcript|length=2406bp
ANTCCTTGTTTCCCACTCAACAACAAGGATTGGATCAAGGGTACAATGAT
ACAAAAGAGCAATCTCGGAATGCGCAACTTAATCAAAGTAATACGTCTCA
CCAGTCTGAGATTGGTCCAAAAAGTATTAAATCTCGTCCAGAAGATAAAG
TTAAAAAACCTAACAGAGGTGGAGAAGGTTTGGATCAACAGCTGAATTTA
CCGAACCGAGGGCAGTCGCCTCAAGAGTCGATCATATACGACGTAAAAAA
AAACGGCACGAAAGACAACTTGATTGACGACGTCGGTGATGTTAATGACG
TTTTTAAAAGCGAGGACGGCAAAGATCTCGGAGCCACAACAAGTGGTTTG
AGCAAGACTAACAGCTTACGTAAAAATAGTGATCAAATTGACGGCGTTGA
CGGGACGACGGGAAGTTTAACGCGGATTAACAGCTTACGTCAACAGTACC
AGACGGTACGGTCGACGTCTCTTGAGAAGAATTACGAAGCGTTAGAGGAT
GAAATGTTCGGCTCTTCCGACGGATCGCAAAATGAAGAGAGTGATGGTGA
AGAGGCGGATGATGAGGCGGAACAGGCGGATGTTGCTCCTTTCTCTCCCA
TTCCTCGCACAACAAAACCTCAACTTCCCGGTGAAATATCAGACTCCGAA
ACTAAAGATGATGAAACTTCACAAGACTCCAGTTCAAAAGTGGTGCCAAT
CAACACTGGCAATCTTCCTGGTACTAATGACACACAACCGTCAACAATGG
ATACCAACCTGTCAACTAATAAACAGATCACTGATGCTCAAAATCCGTCT
TATTTCTCCATCTCCAGATCACGAAAAGGATTGACATTGCAAGGAGATCA
CTGTGAAGAAACTGTGGAATTACAGGATGTCGATGAAACGGATTGTGGTC
AGCACGAGTACGACACTCCATACGAACCAAGCTGTCAATCAGACCCAGAA
TCAACCGAACCAAGTTGCCAATCAACCTCAAATTATGAAGTACCGTGGTG
TAGCGATAATATTTCAAATACAGAAGCCAGTCAACGCAACGAAAGCGGCT
CTTCGGTAATAGAAATCCAAGTTATACCAAATACTCCTCAGGGAGAACAC
GGTTCGGGCACGGAAGACGCGCCCTTGCCTCGTCATTTTTCCGGCTCCGG
TGAAGATATCGATGCTGGAGCTTACTCGGACCTAGAAGAAGCGTTCGAGG
AAGGCCCTTACGAAGGGTTGGTTACGGAAAGCCGAATAGTTGCTTtaacg
gaaacacccgaaaatgCTACAGAAAGAGTTGACGAGAATCCGGATCCTGA
ATGTGACCGGAACAGCCCGCCCAATTATTACGACGTCAACAGCGACTCGC
CGCCGCCGTCTACAAATGACGGCGTCGGAAATACTTACGAAACTTTAAAT
TTCAATGATCATGAAGATGAAGAGAATGTCTATGAAGATTTAGATAAATT
AGAAGATGACAGGGTGGATAGACCAGCGGAACTACCCAGCAAAACATTAT
GCGGTAATCCGAACGAAGCGTTCCCCGTTGATACgttttatttaaagaaa
ttgGATTCGATCATTCAAGAAATTCGCTTTGGTATAGATCGATTACATTC
AGTACTACTGATGGTGTACGAGGAACTGGGAACACCCATCGGTAAAGATC
AAGCTTACGCAACATTGGAAAGCATTTTGTTTCAACCCTTATGGCCCTGG
CTTTTGCAAGCTTTCAGGAAGCTTAACGAGCACAAGGAAGAATACTTGAC
AGAGCTGTTCCGAAAACAACACCATTGCACACCGTACGATTTGAAAGTGC
GCTCTAAATTCGCACTCTGTCAACCTGAAACCTGCACTCAGGAAGACCCA
TACAGAGAAGCTATCGAAGAGTTGAAAAAGCTCGGCAATCTGAAATGTCC
ATTGGATAAACTCGAATGTCTCGTTCGTGCTTCGAAATCAGTCATCTTAT
GTGTTGAAGAATACTCAAAGAAACGCGGAGATGACAAAACACCATTGACG
AGTGGCGACGACTTACTTGGAATCTTTTCGTTTTTGATCATGAAGACAAA
TTACCCACAAATCGTCTCTGAATGTCATGCTATGGAAGAACTGGCTTATG
AAGGGTATTTGATGGGTGAAGAAGGCTATTGTTTGACCACTCTCCATGCT
GCTATTTCAAACCTGCTCATTAAAAAGGACTGGTAATTAATCTGACGAAA
GGAAAGGAAGGTGTACACAACGACCAAAGTTGATTGGCAATGAGGAAAAC
ACGAAAACACTAGCTCTTCATTAAATCTTAATAACTAACTCTCATACTTT
CGGATACCTAATAGCCCNgctttgaggaagaaatgtaattttaacccaaa
tgttcactcaaaagtccaaaactctcaaattgatcatttctcatgtttgt
aaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_58:41566..51983-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070893 ID=TCONS_00070893|Name=TCONS_00070893|organism=Clytia hemisphaerica|type=transcript|length=10418bp|location=Sequence derived from alignment at scaffold_58:41566..51983- (Clytia hemisphaerica)
ANTCCTTGTTTCCCACTCAACAACAAGGATTGGATCAAGGGTACAATGAT
ACAAAAGAGCAATCTCGGAATGCGCAACTTAATCAAAGTAATACGTCTCA
CCAGTCTGAGATTGGTCCAAAAAGTATTAAATCTCGTCCAGAAGATAAAG
TTAAAAAACCTAACAGAGGTGGAGAAGGTTTGGATCAACAGCTGAATTTA
CCGAACCGAGGGCAGTCGCCTCAAGAGTCGATCATATACGACGTAAAAAA
AAACGGCACGAAAGACAACTTGATTGACGACGTCGGTGATGTTAATGACG
TTTTTAAAAGCGAGGACGGCAAAGATCTCGGAGCCACAACAAGTGGTTTG
AGCAAGACTAACAGCTTACGTAAAAATAGTGATCAAATTGACGGCGTTGA
CGGGACGACGGGAAGTTTAACGCGGATTAACAGCTTACGTCAACAGTACC
AGACGGTACGGTCGACGTCTCTTGAGAAGAATTACGAAGCGTTAGAGGAT
GAAATGTTCGGCTCTTCCGACGGATCGCAAAATGAAGAGAGTGATGGTGA
AGAGGCGGATGATGAGGCGGAACAGGTCAGTGTTTTAAAACCACCCGGGC
GGTATACAGAATTAATACACGGGTTCATATTAGCCAAATGTTGGCCAAAT
TAGAGAAAGTATTTTATATGACCTTCCATCTGAGGGGACCAATATTCCAA
TTCGAATTACAGAGAGATTTGAATAATAGAGGTTCGAATCAGAGATCGTT
GACTGTATATTTATCTGTGCATTTTTATCCAATCAGAACTTGTTTACTCT
TAAACTTTTTTCATGACTTTTAAACCACCCGTGTATTGATTTGTTCATAA
AAAAGCAAATTGTGAGCAAATTCGTGAGATTCGAATTATAGAGAGTATCT
TACGAGTGATGGGAGTTGATAATTAGTTCGAATTATAGAAAGATTCGAAT
AATATAAGTTAAGTAGAGTCCACGCGCTCAAAACCTCATTTAATATTCAT
CTCAAATCTGGATGAAAAAGATCAAAGCGGTGTGTCAACTTTGGCAGATT
CTTTTACAGAGCCATGATTTTTAGAGTGAATACGTTCCATGCGTGGAATA
TCAGAATCTACTTGGAGATTACAATTGATCGAATGATTTAAGACATGGTT
CTATTGAAAAATTCAAAATTTTTGGTTTTTTCAGACGTCCTTCTTTGATT
AGATCTTCATTTCATTTCATTTGCATTTTTTAGGCGGATGTTGCTCCTTT
CTCTCCCATTCCTCGCACAACAAAACCTCAACTTCCCGGTGAAATATCAG
ACTCCGAAACTAAAGATGATGAAACTTCACAAGACTCCAGTTCAAAAGTG
GTGCCAATCAACACTGGCAATCTTCCTGGTACTAATGACACACAACCGTC
AACAATGGATACCAACCTGTCAACTAATAAACAGATCACTGATGCTCAAA
ATCCGTCTTATTTCTCCATCTCCAGATCACGAAAAGGATTGACATTGCAA
GGAGATCACTGTGAAGAAACTGTGGAATTACAGGATGTCGATGAAACGGA
TTGTGGTCAGCACGAGTACGACACTCCATACGAACCAAGCTGTCAATCAG
ACCCAGAATCAACCGAACCAAGTTGCCAATCAACCTCAAATTATGAAGTA
CCGTGGTGTAGCGATAATATTTCAAATACAGAAGCCAGTCAACGCAACGA
AAGCGGCTCTTCGGTAATAGAAATCCAAGTTATACCAAATACTCCTCAGG
GAGAACACGGTTCGGGCACGGAAGACGCGCCCTTGCCTCGTCATTTTTCC
GGCTCCGGTGAAGATATCGATGCTGGAGCTTACTCGGACCTAGAAGAAGC
GTTCGAGGAAGGCCCTTACGAAGGGTTGGTTACGGAAAGCCGAATAGTTG
CTTTAACGGAAACACCCGAAAATGCTACAGAAAGAGTTGACGAGAATCCG
GATCCTGAATGTGACCGGAACAGCCCGCCCAATTATTACGACGTCAACAG
CGACTCGCCGCCGCCGTCTACAAATGACGGCGTCGGAAATACTTACGAAA
CTTTAAATTTCAATGATCATGAAGATGAAGAGAATGTCTATGAAGATTTA
GATAAATTAGAAGATGACAGGGTGGATAGACCAGCGGAACTACCCAGCAA
AACATTATGCGGTAATCCGAACGAAGCGTTCCCCGTTGATACGTTTTATT
TAAAGAAATTGGATTCGATCATTCAAGAAATTCGCTTTGGTATAGGTATG
TTAAGAATAACTTTCATAATTTGATTGAATTCGTTAACCATGTTCAGACG
TTACGGTTTCGTATCGCTCCGGTGTGGTATTTGTGACGGATTGGAAGTGT
TCATACTCATTTCGGAACGTTTCAGAGCAAGAAAATGGAGCAGTTCCGTC
CCGATGAAAATAGTGGAGCGAAACTGTTTCGATCTGTTTTGCTCTGTAAC
GTCGGAACTGGTTCGTTACGGAGCGAAACGGAACGTAGCGTGTGAACGTG
GTCTTAATCTTATATGCAATTTTTCTGTCATTCGTACTCAGAAAACAAGA
GATTTTTTTTTCGTTTGATGTTTTTGTCTGACGTCATAAGCGACACTCAA
TTGAATGTTGTAAGTCTTAACAGAAATTAGCCTAACTTTCCAAATAACAG
ATCAGTGGCTTGAAAAGCCATTCGAAAATATTGAAAATAAGTGGACGTAC
ACTAAAAAATTCTCGTTATTTTTATGTTACCTACTCCACCTACTTATTCG
AACCTCTATTATTCGAATCTTTATGTTATTCGAACTGAAATATAGGTGAC
CTCAGCTAAAGAAGAAAAGTGGCTTAAATTACTCTCTGTATTTTCTAATT
CAAAGAAAATCTTTGGAGCCATGAAGATTGTATTAGAAAAAGTCAACTGT
ACTCTCAATCATGGTCGAAATTTATTGAGATTTTAATGTATTTTAACGCT
TTTCAGAATTTAAAGTTCGGGCGAGAATTGCTATTTTAGTACTTCAACTT
TATTTCATTGAACATTTCGATTTTTTGGGGGTTCGGTGGCTTCTAGGCGA
TATTCCAAGAATTATTGGAGCAAATTTGAGCTTTTAAATCCTGAAATCCT
AAGGTCCTCCTAAATATCATGTTAATTAAACTCAGAGTTAAAACTCTACT
TTCCAATTTTAGTTTAACGCGCTTAAAAACCATTTGTAGTGTTTAAAATT
TCGCAGGTAAATCTCATTTGTCTCAAATATTTTGTCCATGATTGTAGGTT
TGGGAAAGTTTGCAAATGTCATTGGTTACAAACCTATAATAACAAAATCT
TCTGTTTCAATGGTTATAGATCGATTACATTCAGTACTACTGATGGTGTA
CGAGGAACTGGGAACACCCATCGGTAAAGATCAAGCTTACGCAACATTGG
AAAGCATTTTGTTTCAACCCTTATGGCCCTGGCTTTTGCAAGCTTTCAGG
TAAACACCACTATTGCTTTTTGGTATACTTGATGGCGCCGTTAAGTGGGC
TGGTGTAATTTGACCGACTCCATTTTTTTGGTTTAACTTGAGCACGTAGA
AAATCATTTTTCTTTTGACAATTAATATTTTATTAACACCTTTTTGAAGG
GAAGGAACTAATTTTTTTGCGAATTTTGAAGAAATTGAAGGAGATGAAAT
TGGAATTTTCAAAATAAAACTCTTTTCCAATTTTCATGAAAGAATTCCAA
GCCTCGACTGTTACATACTAGTGTACGCACTTCAACGATGGGGCGTAGCA
CAACGGAAAACGTCAACATTTACAAACCCCACCCCCTGTGAAAACTTCAA
GTGTACGCAAAGAACAATTTTATAAGAACACTATATGAAAATTGGTCAAA
TCTTAAGAACAAATTAAAAACAATCGAAGCCTCGGATTTACTATGAAAGT
ACTTACCAATTTTAAATTTTTAAGTAAATAAACTTTAAGCGTTTTAACAT
TGTAAGAACATTTAAGCCTGAAAATTTATATTATAAAAAAAAGCGTGTAT
TATTTTTCGCCTTTTCAGGAAGCTTAACGAGCACAAGGAAGAATACTTGA
CAGAGCTGTTCCGAAAACAACACCATTGCACACCGTACGATTTGAAAGTG
CGCTCTAAATTCGCACTCTGTCAACCTGAAACCGTAAGTCGAACATAGAT
TTCAAGTTGTCAAGATTTTCATTTTAGTAAAATCATGGCGTTCTAAATTA
GGTTTCAGTAATTTAGAACCCCATGAGTAAAATCCATTCTCCTTAAGGGA
AAGAAATTTTCGCGGGAACAAATTTTTGACAAATCCGCGAAAATTAAATT
CCGCGAAACACGAATATTCTCAGGATTTAAAAAATCGCCTCTAAAGTTTG
TCCTTTTAGGGTAAAATAGGTCATATTTCAAACAAAAAAATCTCTCAACC
GCAAAATTTTAAGCTCTTTTAAATTCCGAAAATTTCTCTCCTTCTCTAGC
GGCTTGTATACATTTTTACTTATGTCGAGGAGGTGTTACGACCAGGGTGG
TCTAATAAAAGATCTAAGGGGTTCTGGTCTTCCGAGTGTAGAAAATTCAA
AGAAAATTAATGGGGAAAATCCACTAAGACGTCCTAAACACGTGGATATG
TATTTTGGTAAATAGTGGTAAACTGGGAGGATAATTTCCCAAATTCTCAT
TTTCCCGCCCCCTTGATAATCAATAGTGTTTATTTAAAATCATAAAATGG
TCTTTCTCATCCTTCCACTAATCGACTATATGAACGTAAATCAACTCTAT
CTCATTAAAACTACATCCATTCGAATCTTTCTGTAATTCGAACTAAAATA
AAAGTCCCCTCAGCTAGAAAGCGGTCGAAATTACTCTCTGTAATTCGAAT
CTTTAATCACGTGAAAATCGAATTAGAGAGAGAGCCAGGATATCTAATAA
TAATTATATTATAATAGGATATCTAAGCACTTTGAGCTGGGGCCGTTTTT
GTAACTTTAGATTGAATTTCTAATATGCCTTATAAAGGGAACTTGCTCAG
CAAAGCTGTGCATTGATGAAGCTAGGGGTCTTGTCGGTGTTCAGCTCCCA
AAAACTCTTGAATATGTAGATAATAATTAGTTATTGTTGCTCAAAAACAT
CAAAAAAGGTTAATTTCGCTAGAAAAATCTCTCATTTATTTTGGATTGAG
TTTCAAAAACTCAATCTTAGATTGAGGTTTACCTGCAAGACGAAATTATT
TTCTTATTCATTTCATCCAGTGCACTCAGGAAGACCCATACAGAGAAGCT
ATCGAAGAGTTGAAAAAGCTCGGCAATCTGAAATGTCCATTGGATAAACT
CGAATGTCTCGGTAAGTAAAGTTTTTTACCGTAATTTCTCTAATACAGTG
GACTCTCTTTAATTCGAACTTCTATTGTTCGAATCTTTCTATAGTTCGAA
CTCTTCTTCAGTTCCCGTCAAGAGGAAACCCTCGTGAAATACTTTCTATA
ATTCGAATAGTCTAGAATAATATAGCTTGATACCCTATTTTTAGCGTTTT
GAACCTTAATTTGGTCAAAAGTCGGCTATTCTAGGCTGATGTTTGTTCTT
AAATTGCTCTTATAATTTTTTGGCATTTTGAGCCTCGTTATTCTTATAAA
ATTGTTCTTATAAAAAATAGAGTGTAAGAGATTCGATTTTGGCTGAACAG
AGGGTTAACGTTTTTTTCATTTTTTCATTTTCATAAGCAGCGGTGGCCAA
GTGGTCAAAGGCGTCAGCGTCTCAAACCAGGGGTTCGTGGTTCGAATCAC
CGCTCCGTTCCGTTCAGCTCATAGATAGCCGAGCCTGCTGGCCGTGGACC
CCGTGAAAACAAACGAAAGACTGTCTAAAAGTCCAAGATTACCCACGTAA
AATATCGACTCATTCAACATTCATTTTTCTTTTCTTTCATTCAGTTCGTG
CTTCGAAATCAGTCATCTTATGTGTTGAAGAATACTCAAAGAAACGCGGA
GATGACAAAACACCATTGACGTAAGTACCCAAAAGTTTTTATCTGCTACC
GTCAACGGCTGTAACGTGGATCGATTAGTCAAATCTTGGGATGGTTGATT
TCTAGACTGTATTTTCACTTACTGTTTAAATCTCTTTGACAACAAGTTTG
TTTTGATACTTCAACCAAGTTTATCAATCAAACTTTCACCATACCATCCC
ATAATCACAACCAGGATTAAAGAGGTTCGGTGAAATGGTGGCCGAATTGC
TGTCCCATGTTTTGTCACATAGTCCCAAGTTAGAGCCTTTGACGGTACCC
AGATGCAGAGATTTTAACCGACACGCTAAAGTTCTGAAGGTCGGGAAAAT
CTTCAGCATCTAGAAGGTTTACATTAATAAATTTCGCAAGACCGCGTCAA
TTTTTTTTGCAGCCTGGACCCCAGCCCGGGGATCGGCAGGTCCAGCCGAA
ATATTTTCAGCTTTACGTGCAACGGTACTGGGGATGCGACACATCTAAGG
CCTACTATTATTCCGCTCCGATGGAATATTGGTCCACTCCTTCAGAGCTA
ATCGCCATCGGAATATCTGATAAAAAAGGTTTCAATTATGTTATCCTAAA
AGTCGTTGAAACGTTGTTTTCAACCTTCACCTGCAATGAACGTCTCGAAC
GATATGTGCCAACTGGGCCTGTTCACAAATAGTCTTCACTTTGTTTCTTA
TTTTAGGAAAAAATTCGGCTTATACCCAATTTTTATACCTTTGGTCTTAT
TGATCTTGAAATTTGATTCTCATATTATGGTGGTCTCTCAACCCTCATTG
TTTTTGGGCCTTTTGGACCTAAATGGAGGTCCTATAAATTAACCCCTGTT
CATTTGTTCCACAATTAGTTACACCTAGATAGTTACTAAAGGGTTTTAGG
TTTTTCTGCTTTACTACTCATTTCAGTTTTATGAGCTGTTGATTTACCCT
ATAGGTCTATAAAACACCCCCTTCGCACAGACCCACTGGAAAAATTGTTC
AAAATATCGTCCCTGTTGGAAAATTATCCTCCAATTTTTATCTCCACTGA
AAATAATCAAACAAACCAATCCTCACTGCAAATTATGATGCTTTTCTTCC
CATCCCCACTGAATTCTCTGACTTGAAAACAAAAGAATTGAAATCCCCAG
CCATAAAAAATATGGGAATATCAATCCCCATCGAGTTTAAGTCCGTTATT
TTCATCCACACTGGCTGAAAAAAATGCTTCCGGGTCTGTGAGAAGGGTGT
TATAAAAGCGTCACTTGTTCTCATATGACAAATTTGTCTAATTCAAAGTG
GAGATTCCCGGTCACGTGACTTTTTTTTCCTCGAAATTTTCTTTTAGGAG
TGGCGACGACTTACTTGGAATCTTTTCGTTTTTGATCATGAAGACAAATT
ACCCACAAATCGTCTCTGAATGTCATGCTATGGAAGAACTGGCTTATGAA
GGGTAAGGTTTTTTTTATTTCCCTGTGTATTACGCATTACGCATATTTGT
GTCTTTCGCTTTTACGAAGAAGCCATCACCGTTTTATACAGTACCAGACT
CCCACTCCAAATAATCGATAACAAATCAATTAACCGGATCATCAATTGCT
AACGGTAATTGATAGTTAATCGCTAATGTAATGCAAATTATGACAATAAG
GAAGGTTCAATTACATTAGTTGATCGATTATTCAACGATTGGCTCTAAGA
TGATTGACAGATCGATTGTTTAACATTTAACGGTTGCAAGTTCAATCGAT
CATTCTTCAATTCCAATCAATGATCAAGACTCAATATTTTCAAATAGGCT
TCATTGCTTTGAAATTTCGGACACTTACAGTGCAGAGTAAATTTTGCCAA
ATTTGAGCAAATTTGTGAGCGAAAAATCAGATTTTCGAAATTTTACACCC
TTAGATGCACCAACTTGGGCAGATTTTTTTTACACAGCGATGACCTTTAG
AGTGAAAGTGAATACGTGGCTTGCGTGGAGTACTCAGGATCTGCTCGGTG
ATAAGTTTCTATCTGATGTTTTATAAGAACTAACTTTGTAATAACATAAG
GCTTCGGTGGCCGAAATGTTAAGAACAAGTTAAGAACATTGGGCTCTTCC
AGAAAATGTCCGTACATGGGGGGTGGAGGATATATTGTCCGGGGGGTAAC
GAAAAATCATCAAAATTTGCCTTGTCCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGCTAATTAGTTT
TCCACCCAGGACATTCTTATTCCAACCCTCCTCTCCCCGCTTATTAATTT
TTTAATGTTTTTAAAAGTTCCCTATTTTGTTCTAATTCAGCTGTATTAGC
CTCCTTTTCAAAAATCTTCCAACCGGGACATTCTTATTCCACCCCCCCTC
CGCTTATTAAGTTTTGATAATTTTTGCAACTCCCCCCGCATATTCTAACC
CTTCTCCCCGGCTATTAGGTACACGAGAGTAGTAGAGTTTTAGCAAACTT
TTTTTCAAACCAGAACTTTGAACATTTTTTTCGGTAAAATTCATATATCA
TACATTATTATTTTGGGATAACTCATACGCTTTTAAATTTCGCAAATCAA
ATACACGCTTTTTTTATAAGAATATCTTCTATAAGAATATCAGGGTGAAA
ATTGGCCCAAATCGGGTGAGTACCCTCTAGGTGAGTTTCACGTTTCACAG
ATTTTCATAATAATAAAGTCATTTTGTATTTGGTTAACAGAAAAAACTTC
TTCCTTTGTTAGAGATAAATTGAAGCTTTGAGGAAGAAATGTAATTTTAA
CCCAAATGTTCACTCAAAAGTCCAAAACTCTCAAATTGATCATTTCTCAT
GTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGATATATTGTCCGGGGGGTAACGAA
AAATCATCAAAATTTGCCTTGTCCGGGGGGTAAATTTTCTCTGTCCGGGG
GTAATTTGGGTTGTCCGGTGGGTCAACTGATACTTGTCTGGGGGGTAAAA
CCAGTTGTCCGGGGGCCAAAAGTCACTTTGTTGTATCTTATATTGTTATA
TCCTCCACCCCCCATGTTCAAATTTTTTCTGGAAAAGCCCATTCCAAGGC
TTTGCAGACTCTAAAATGGCGAATTCCTTAAGAAAATGCTCACAAAATGG
TGAAACTAGGAACATGTTAAGAATATTTTTAGGCTTGAAACTCAAAAAGT
TAAGAACATCCGAAGACTTCAAAAATGTTGTGATGGCTAATATTAGGTTT
CTTTTTATTTCGGCAGGTATTTGATGGGTGAAGAAGGCTATTGTTTGACC
ACTCTCCATGCTGCTATTTCAAACCTGCTCATTAAAAAGGACTGGTAATT
AATCTGACGAAAGGAAAGGAAGGTGTACACAACGACCAAAGTTGATTGGC
AATGAGGAAAACACGAAAACACTAGCTCTTCATTAAATCTTAATAACTAA
CTCTCATACTTTCGGATACCTAATAGCCCNGCTTTGAGGAAGAAATGTAA
TTTTAACCCAAATGTTCACTCAAAAGTCCAAAACTCTCAAATTGATCATT
TCTCATGTTTGTAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044084XLOC_044084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070893-exon-scaffold_58-1575043694:51409..51983TCONS_00070893-exon-scaffold_58-1575043694:51409..51983Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:49739..50750TCONS_00070893-exon-scaffold_58-1575043694:49739..50750Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:48535..48664TCONS_00070893-exon-scaffold_58-1575043694:48535..48664Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:47851..47965TCONS_00070893-exon-scaffold_58-1575043694:47851..47965Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:46673..46763TCONS_00070893-exon-scaffold_58-1575043694:46673..46763Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:46014..46089TCONS_00070893-exon-scaffold_58-1575043694:46014..46089Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:44582..44686TCONS_00070893-exon-scaffold_58-1575043694:44582..44686Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1575043694:41566..41867TCONS_00070893-exon-scaffold_58-1575043694:41566..41867Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:51409..51983TCONS_00070893-exon-scaffold_58-1510915933:51409..51983Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:49739..50750TCONS_00070893-exon-scaffold_58-1510915933:49739..50750Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:48535..48664TCONS_00070893-exon-scaffold_58-1510915933:48535..48664Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:47851..47965TCONS_00070893-exon-scaffold_58-1510915933:47851..47965Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:46673..46763TCONS_00070893-exon-scaffold_58-1510915933:46673..46763Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:46014..46089TCONS_00070893-exon-scaffold_58-1510915933:46014..46089Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:44582..44686TCONS_00070893-exon-scaffold_58-1510915933:44582..44686Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1510915933:41566..41867TCONS_00070893-exon-scaffold_58-1510915933:41566..41867Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:51409..51983TCONS_00070893-exon-scaffold_58-1491911889:51409..51983Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:49739..50750TCONS_00070893-exon-scaffold_58-1491911889:49739..50750Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:48535..48664TCONS_00070893-exon-scaffold_58-1491911889:48535..48664Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:47851..47965TCONS_00070893-exon-scaffold_58-1491911889:47851..47965Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:46673..46763TCONS_00070893-exon-scaffold_58-1491911889:46673..46763Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:46014..46089TCONS_00070893-exon-scaffold_58-1491911889:46014..46089Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:44582..44686TCONS_00070893-exon-scaffold_58-1491911889:44582..44686Clytia hemisphaericaexon
TCONS_00070893-exon-scaffold_58-1491911889:41566..41867TCONS_00070893-exon-scaffold_58-1491911889:41566..41867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:41566..51983 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.804882	3.16032e-06	1.6148	1.99987	0.165411	0	0.116168	0.00484158	0.00974973	1.27272	0	0.0210677	1.60125	1.64477	0.34993	0	0	0.000688932	0.161675	0	0.338457	0	0.523573	0	0.00142509	0.726975	0.307353	0.208229	3.79892e-09	0
Blast
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BLAST of TCONS_00070893 vs. Swiss-Prot (Human)
Match: VP9D1 (VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.261e-36
Identity = 80/217 (36.87%), Postives = 119/217 (54.84%), Query Frame = 3 
Query: 1542 LKKLDSIIQEIRFGIDRLHSVLLMVYEELGTPIGKDQAYATLESILFQPLWPWLLQAFRKLNEHKEEYLTELFRKQHHCTPYDLKVRSKFALCQPETCTQED-PYREAIEELKKLGNLKCPLDKLECLVRASKSVILCVEEYSKKRGDDKTP----------LTSGDDLLGIFSFLIMKTNYPQIVSECHAMEELAYEGYLMGEEGYCLTTLHAAIS 2159
            L++L + ++EI   +DRL S+ L+ +E L T   KD+  A +E   F PLWP LL  +R ++  +E  L+       +  P  + + +K     PE       PY  A +EL  L    CP  KLEC+VR  + + +C E+Y      + TP              DDLL I SF+++++  PQ+VSEC A+EE  +EGYL+GEEGYCLT+L +A+S
Sbjct:  405 LQQLKTAVEEIHNAVDRLLSLTLLAFEGLNTAASKDRCLACIEEPFFSPLWPLLLALYRSVHRAREAALSRSMELYRNAPPTAIGIPTKLLPQNPEAKGATGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPT--PEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTSLQSALS 619
The following BLAST results are available for this feature:
BLAST of TCONS_00070893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP9D16.261e-3636.87VPS9 domain-containing protein 1 OS=Homo sapiens G... [more]
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