TCONS_00070888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070888
Unique NameTCONS_00070888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070888 ID=TCONS_00070888|Name=TCONS_00070888|organism=Clytia hemisphaerica|type=transcript|length=1856bp
ctagaatatagAAATAAAAAAGGATTATTAAAATGGCTGATGTTAAGAAA
GGTGGCATCATTCGGAGAAATCGACCTGGAATGAAAGCACAGGATATGTG
CAATTGGCCAGACGAAACATTTGAGGAGATGGATACCACTCTTGCTGTAC
AACAGTATATTCAACAGATGATAAGACAAGACAACACAAAAATTGAAGAG
ATTCTTGAACCTCCAGAAGGTCAAGATGAAGGTGTTTGGAAGTATGAACA
TCTTCGGCAATTCTGCTTGGAATTCAATGGACTGGCCGTCAAACTGCAgC
AAGAATGTAAACCTGACACATGTACACAAATGACAGCCACCGAACAATGG
ATCTTTTTATGTGCTGCTCATAAAACGCCAAAAGAATGTCCAGCAGTTGA
TTACACCAGACATACATTAGATGGCGCAGCTTCTTTACTAAACAGCAACA
AATATTTCCCAAGCAGAGTCAGTATAAAAGAATCTTCTGTGATGAAACTT
GGTTCAGTGTGTCGTCGTGTGTATAGGGTCTTCTCGCATGCTTATTTTCA
CCATCCAGctttgttcaaagattttgagAACGAAACACACTTATGTAAAC
GTTTCACGCGGTTTGTAATGAAATACAACTTGATGTCACGTGACAATTTG
ATAGTTCCCATCCTTGAAGAGGAGGATGGTGAGGGAGAAGGTTACATGAT
CAATAACGAAGCTAACGAAGAATTCGGAGATGAATCCTACTCATAGTGGA
TTGGAATTAATGATCTCGTTTGATTTCTTTGAGCCgtcgatatttttatt
tattgttttataATTGAATGGAAATCATCAACTCCAAAAGTCAATCGAAT
CAAACTCACAAGTGATGAGGGATATCCTTTTGAGTTTCACCTCACTTTTT
GGAGAAGAATAAATGGATAACAGAAGACAAAGCAATCTTCTGAAGACCAT
AagaaagacttttttgaaaataaatttatagtCCTAGAATAAACTTTCCT
TGTACAAAGGAAGGGGTAATGGATAATGTAAATACCTTGAAATaggaaat
atgaaaataaaacaatcaaaattcttTGATTACTCATTGAGGCTTAAGTC
GAAATTGAGACTAGAAAGACAACCGTAACAGAGTAATAGGTAGGGGCATT
AATTAATTTACTTTtgtaaacaatgaaaaaattagACATAAACCGTCCGA
CTGTTCTAAAGTTCAACGTTAAATGTATTGATTCTTGATACGAAGAGTAC
CACCCAGGCAATTTCTTCAGGCAGGTTAGTAGACGCTGAAATAAAGATGA
TGTAATCTTATAACCATTTAATAATTGATTTGACCATTTCTTTCCGAAAT
AAGCTTTTCGTGGGAAGTTCTAAAGATTGATGATTTCTATTCGAAGATGG
AGTGCAGTTTACAGttttcttttaGTTTTGGTCGACTCAAATCAAAATGG
GTGGTTGAAGCCCATCACAACAGCATTTACACAACCACGAGAATGTCGAG
ACACAACACAAAAACTTCTCCTAATAAACTGCTGCACCTCTTCGTCTTTC
TATCAACACTTTTCATCCAACCATCTCATGCACAAGAGAGAGTGACAACC
AAAGATTTTTACCCTCATGGATCAGGAGCTGTTTTATTAGAAAGCAATAA
CAAAGAGATTTTCACAACAGGTGGGATAAAGTATCCTCATTGGTCAAACC
AAGACAATGCTGTCATTAGTATCGTGGAATCTGGTATCATTCGCTTGGGC
AGCTTCGAGGGTATCAATACATGTGACGTTCTGGTGCTCGCCACCGCTCA
ACCTATCGACAAAGGGAATGGGATTCGATATGAAGAAGTCATCACACCAA
CACAAA
Run BLAST on NCBI

protein sequence of TCONS_00070888-protein

>TCONS_00070888-protein ID=TCONS_00070888-protein|Name=TCONS_00070888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MADVKKGGIIRRNRPGMKAQDMCNWPDETFEEMDTTLAVQQYIQQMIRQD
NTKIEEILEPPEGQDEGVWKYEHLRQFCLEFNGLAVKLQQECKPDTCTQM
TATEQWIFLCAAHKTPKECPAVDYTRHTLDGAASLLNSNKYFPSRVSIKE
SSVMKLGSVCRRVYRVFSHAYFHHPALFKDFENETHLCKRFTRFVMKYNL
MSRDNLIVPILEEEDGEGEGYMINNEANEEFGDESYS
Run BLAST on NCBI

transcript from alignment at scaffold_58:1411427..1419097+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070888 ID=TCONS_00070888|Name=TCONS_00070888|organism=Clytia hemisphaerica|type=transcript|length=7671bp|location=Sequence derived from alignment at scaffold_58:1411427..1419097+ (Clytia hemisphaerica)
ctagaatatagAAATAAAAAAGGATTATTAAAATGGCTGATGTTAAGAAA
GGTGGCATCATTCGGAGAAATCGACCTGGAATGAAAGCACAGGTTTGCAA
TAATCTTCTGAGAAGCTAATTTCGATAGTTGATTTTTAAGAAAGCgaaat
ttgagttttttgattTACAAAATCTTTTGTCAGGTTTAGCAGatcaattc
ttttttcagaaacaGATTGAATCTTGTTTTTACTACCTATAAGTTTTTTG
CTTTAGGATATGTGCAATTGGCCAGACGAAACATTTGAGGAGATGGATAC
CACTCTTGCTGTACAACAGGTGTGTAAAGAAAACGTGTTATTTCGGAATT
ACCTCAATTGTGGTAAAGATATGTGTTTTTAGAGCTTATAATAACATCAC
TAATATTGAAAGGTAATCTCTAAGTAAGTTATataaattaattcaaaatt
ttagactTGCAGGctttctaaaatttgctaattctTTCTTCTCATGACCA
GGCATGGTGGTTAATGGCCAGTATTTAGTCTTTACTTTATGAACAGTCAT
GTGATACCATATCTTTACCTTATCTTTGCAGTATATTCAACAGATGATAA
GACAAGACAACACAAAAATTGAAGAGATTCTTGAACCTCCAGAAGGTCAA
GATGAAGGTGTTTGGAAGTATGAACATCTTCGGCAATTCTGCTTGGAATT
CAATGGACTGGCCGTCAAACTGCAggttactttaatcgtagaaatttttg
cgagactaattttagcattttagcgagttttccctattttcgctaaaata
aatctcgctaaaacacgccgaatcgacagatcgctaaaatttatccacgc
gaaatttcNtaaagttttatttttgatcaagcctgaagcaaaaacatttt
tctgtgatagcatttggtaatgaatctattctgttctaaaattatgtact
aataatagcttctcctagtttttgcacatcaattatattcagataatatt
gattcagattgattttgctagcttcattgggtttgtttttattatattgt
ctgttttcagtcattttctattttagcatatgaaattttttgtgttgtgt
tgaagaaagagtatttcaaaaatgagtttttttgaagtttctaatagtac
cctgtttgtgtgggagggggtgggtcccctttaaacagctttaaactcaa
atttgtcagattggtattggtactaaattagggggtgggtcccNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcgataccaat
tttggggtggtggtgttaacttagctcaaaaggtcaaaagtcaggttttt
gggctatgggttggtattataaatgttgacccccccctggaaatcttttg
aaatcgtgattcgctaaaataaatccaaaaaaaatcaagatttttctgGC
TCTCTAATATatgctaaaattagtctcgctaaaatttctacgattaaagt
attgaAATTCATTCTCTGTTATTTATAAACTGTTTCATATCGGTCAAAGA
GTATTGATTAACTGATAAAAGAGTTTTTAgattataccgggtgcgccaca
aaaaagtttctctcttttaaactaaatttctcgaaatctaaaatttttaa
aagaaccatttctatttcattggaaagaagaaagaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNactaaaagtaaattaaattgattttgatgaa
tatTTTAAACTCTTGttgacccttcagtttcaaaatttatgtgtttagtt
actgaaaaatgctcttaatcatgtaaaggctttTGCGACCaccaaatttg
aaataaaaatttgataggtcaattttcaacgtttccgtgcactttctgaa
agtaacttttttattcaattgagcataactttcgatctaatgaaccgaat
ttaataaatgacccatcaaaatttaagtttatcttttttctttccaatga
aatgggaatggttcttttagaatttttcgattttgagaaatttagtttca
aagagagaaacttttttgtggcgcacccggtatttcattaaaaaaaattg
attttaaaatctcTAGGAATATCTGGAACATGCCTTtccattttataaat
tttttgaatattttttctttccagCAAGAATGTAAACCTGACACATGTAC
ACAAATGACAGCCACCGAACAATGGATCTTTTTATGTGCTGCTCATAAAA
CGCCAAAAGAAGTAAGTGAACAAGATTTTACATTACATTACTGTACATTA
CATTATATATTTTGCATTCTCGCAAATAGCATCTCATAATCCTCCGTTTT
TTAACCTTCTCATTCCTTCTTATGTAAAATGTCACTTTCACAGTTTTCTT
TCATGTAAGGCTCTTGGGGTGCATTAGGGAAAATAAACCCATTGCACGAT
CGACTTTAGGTGAAATATGGTATAATAGCACGCCTGGCCGCTAATACGAT
TTTAACTGACCTCATATAAATTGTATCCCACCTCGATATGACAGTGTAAG
TAATAGTATCATTTGCAACTTTTTTTATGGTTATGATGTTTTTTGATTTC
AGTGTCCAGCAGTTGATTACACCAGACATACATTAGATGGCGCAGCTTCT
TTACTAAACAGCAACAAATATTTCCCAAGCAGGTATGTTCAACTAATTTG
TTAATGGGCtaattctaaaaatgttctccaATGTTGAGAGATTGTTTTTA
GTAAGTTGAAGCCTATGGATTTTTGATCCTCTTGATTtttgaccaccctg
gattttacaTATAAATTTCACTGAGTCCCTGGTAAGAAAAATGTTACCTT
CTTAACATGAGCAGGGGGTGTTTAAATTctttaacaaaattaataacttt
CTAATGAAGATTCCTGTAACTTCAAGAGATAATTATATCAAATGAAAACA
TACTACATTCTTAAAGGTTAGAAAAGATTGAGGAAATTTTCCGTTTTGta
atcttttatcgatctttgaCTGGGTCTTTAGTGATTGAATTAAAAAACAT
TACATTTTCTAACAGAATAGTGGTTTTTTGATACCTTTGAAACTTGAACT
TTTGATTCAGTGCTTCTAATTACATCCAATGCTCAGTCtgattgtttttc
tttaaactttAATTTTAGAGTCAGTATAAAAGAATCTTCTGTGATGAAAC
TTGGTTCAGTGTGTCGTCGTGTGTATAGGGTCTTCTCGCATGCTTATTTT
CACCATCCAGctttgttcaaagattttgagGTATGTAAAAGCTTAATCCC
TGTCAtttcttttcgaaaaatatattctTTGCCTGATGGCTATCCATTTA
CGTAGGTAAAACCACTTTAGGAAATATGAAAGAAATTGTTTaagatttga
atttattttgtgGAATGGGCAGGGGGGTTCAAGCAGTTAATCCAAAACAC
TATGCCTGTTTTGACCGTGGtggtccattttcaaattttgccaaaaactG
CCAAAGGGGTGGTCTCTGAAAGAATTCTGGGAAAAAAATGGACTAACTGC
ATTTTCTGTCATTCTGTAAAATTCATTTATTCTGATTCATGCTCGTTTTT
GCCTCTTCTTCTGTctttaaaacgtcaaattgCATCAAAGTCTTGCTTTA
ACTTTCTCCTGCTTTGTTTACGAATTCCGTTTTCACTAATTTTCAAGCTG
TTATAAAATCGGGTGATTCGCCcctttttttgtaaacaaaaatccgatta
aaacagattaaaaatggtagacaatTTGCGAAATACATTTCAGGTGGAAC
AGCCTGCTTGCAAGCTTGTATaacctttttatcaaaatggtttgttttaa
aCCAGCTTTtacttaaaaattttgatcacaaaTTGTGATCGTCACACAGA
ATTGTGctccaaaaaaagttaaaattactTAGAAAGTCGACCAACATCAA
TTAAATAACTTAATGCATGCCAAAATGCCGCGATGGACTTTTAGGGGGTG
GTATACAAAGATTGTGGCTGAAAAACAGTAAATCCAGTGTGGATTAAGTG
TCAGAATGGGTGGGTGGTCCTAAATATCATCCAAAATCAGTTACTACGGA
TGATGTTCTGgattaactgcttgaccccccccctggaatGGGTTGATAtt
gactttttgaaatagatCACTTTAAACAACTTTTCTTGTCGCCTCGCCGC
CTACCAAATATCTTTATCAGGTTCCCAAAACCTGGATGATGAAAATCGAT
TTATAAAGCAGTTATAAGTCTTTTTTGATGACGTTGTTATCAGCAAAGCT
GAAAACGTTCATAATTTGGGAGTAAATTTACATAAATTCTGTCTTTTTTA
GAACGAAACACACTTATGTAAACGTTTCACGCGGTTTGTAATGAAATACA
ACTTGATGTCACGTGACAATTTGATAGTTCCCATCCTTGAAGAGGAGGAT
GGTGAGGGAGAAGGTTACATGATCAATAACGAAGCTAACGAAGAATTCGG
AGATGAATCCTACTCATAGTGGATTGGAATTAATGATCTCGTTTGATTTC
TTTGAGCCgtcgatatttttatttattgttttataATTGAATGGAAATCA
TCAACTCCAAAAGTCAATCGAATCAAACTCACAAGTGATGAGGGATATCC
TTTTGAGTTTCACCTCACTTTTTGGAGAAGAATAAATGGATAACAGAAGA
CAAAGCAATCTTCTGAAGACCATAagaaagacttttttgaaaataaattt
atagtCCTAGAATAAACTTTCCTTGTACAAAGGAAGGGGTAATGGATAAT
GTAAATACCTTGAAATaggaaatatgaaaataaaacaatcaaaattcttT
GATTACTCATTGAGGCTTAAGTCGAAATTGAGACTAGAAAGACAACCGTA
ACAGAGTAATAGGTAGGGGCATTAATTAATTTACTTTtgtaaacaatgaa
aaaattagACATAAACCGTCCGACTGTTCTAAAGTTCAACGTTAAATGTA
TTGATTCTTGATACGAAGAGTACCACCCAGGCAATTTCTTCAGGCAGGTT
AGTAGACGCTGAAATAAAGATGATGTAATCTTATAACCATTTAATAATTG
ATTTGACCATTTCTTTCCGAAATAAGCTTTTCGTGGGAAGTTCTAAAGAT
TGATGATTTCTATTCGAAGATGGAGTGCAGTTTACAGGTAGCTTACTAAT
CTTTTCAGGACAAATCCATGTCTCCTAAGTAgaggttaaaaacttttttc
gaaTAAAGAACGCCTCTCATTGCTTCTTAATACTGACTCTTGCCTTTTTC
ATCATTCAGTTTTAATCCTAAGCATTTATTTTAATTACTCTCTCATTAAT
CAGCGTACAATGCAACCCACATTAACCTCTATACAACTTATTAATCGAAT
TATTCTCCTAGGTTCATATACAAACTATTGATTAGTTAATTAAAGGCTAT
TATATCCCTACAAATCTGTGAACTTTATGTTTTTAAGAATGCTAATATGA
GAGGAGACATGAGAAGGTTTTCTTGACAAACTTTTAACTTTCctttttta
gttttcttttaGTTTTGGTCGACTCAAATCAAAATGTAAGTCCGGTTTGA
TATTTCCTTCGGAATTTGTActtttttatttggattttaaggTTTTAGAG
ATATACTTTGATTCGTTAAGTTTGAATCACGTATAAATGGTGAATGTTTT
TTATCGTAATTTTCTATGTTATATTTTACACCCTACATTTTAGGGGTGGT
TGAAGCCCATCACAACAGCATTTACACAACCACGAGAATGTCGAGACACA
ACACAAAAACTTCTCCTAATAAACTGCTGCACCTCTTCGTCTTTCTATCA
ACACTTTTCATCCAACCATCTCATGCACAAGAGAGAGTGACAACCAAAGA
TTTTTACCCTCATGGATCAGGAGCTGTTTTATTAGAAAGCAATAACAAAG
AGATTTTCACAACAGGTGGGATAAAGTATCCTCATTGGTCAAACCAAGAC
AATGCTGTCATTAGTGTGAGTGTCAACTATTTTGGTATGATGTGTACTGG
ATGATTTATTGCCGAAATATTCGTTTCATATTGAGAtgatattttgaaga
tttttgtctTGAAAACCCGAAGCTCTACACTTTATACTTTTATTAGAATA
ATCTTTAAGAGCAACGAGgctcaaaagctaaaaaaatcgATACATAGCAA
CCCTGGCCCTATTTGTAGAGTGTGCCTAGCGTATAACGTAGTGTAGTACC
TCTGATGCAATGAGTTTTGAAATTCCGGAGATTGCTGTTTGCAGACAGCC
CTGGACCTGGAATGGGTAGATAATTTAAGAATTAAACTTTTCAAAGTAGA
GTTTAAACCTGAAAAGCCTTATTTTTAAAGTGTCAAAATACAGTCAAATA
AAATTCATTGATTCTTGTGAAGGAAAGTGAAATAGAAACGAAACTTTCAA
TGGATTTATAATTCATATTTTTCCTTCAATCGCAGATCGTGGAATCTGGT
ATCATTCGCTTGGGCAGCTTCGAGGGTATCAATACATGTGACGTTCTGGT
GCTCGCCACCGCTCAACCTATCGACAAAGGGAATGGGATTCGATATGAAG
AAGTCATCACACCAACACAAA

Coding sequence (CDS) from alignment at scaffold_58:1411427..1419097+

>TCONS_00070888 ID=TCONS_00070888|Name=TCONS_00070888|organism=Clytia hemisphaerica|type=CDS|length=4998bp|location=Sequence derived from alignment at scaffold_58:1411427..1419097+ (Clytia hemisphaerica)
ATGGCTGATGTTAAGAAAGGTGGCATCATTCGGAGAAATCGACCTGGAAT
GAAAGCACAGGATATGTGCAATTGGCCAGACGAAACATTTGAGGAGATGG
ATACCACTCTTGCTGTACAACAGTATATTCAACAGATGATAAGACAAGAC
AACACAAAAATTGAAGAGATTCTTGAACCTCCAGAAGGTCAAGATGAAGG
TGTTTGGAAGTATGAACATCTTCGGCAATTCTGCTTGGAATTCAATGGAC
TGGCCGTCAAACTGCAgCAAGAATGTAAACCTGACACATGTACACAAATG
ACAGCCACCGAACAATGGATCTTTTTATGTGCTGCTCATAAAACGCCAAA
AGAATGTCCAGCAGTTGATTACACCAGACATACATTAGATGGCGCAGCTT
CTTTACTAAACAGCAACAAATATTTCCCAAGCAGAGTCAGTATAAAAGAA
TCTTCTGTGATGAAACTTGGTTCAGTGTGTCGTCGTGTGTATAGGGTCTT
CTCGCATGCTTATTTTCACCATCCAGctttgttcaaagattttgagAACG
AAACACACTTATGTAAACGTTTCACGCGGTTTGTAATGAAATACAACTTG
ATGTCACGTGACAATTTGATAGTTCCCATCCTTGAAGAGGAGGATGGTGA
GGGAGAAGGTTACATGATCAATAACGAAGCTAACGAAGAATTCGGAGATG
AATCCTACTCATAGATGGCTGATGTTAAGAAAGGTGGCATCATTCGGAGA
AATCGACCTGGAATGAAAGCACAGGATATGTGCAATTGGCCAGACGAAAC
ATTTGAGGAGATGGATACCACTCTTGCTGTACAACAGTATATTCAACAGA
TGATAAGACAAGACAACACAAAAATTGAAGAGATTCTTGAACCTCCAGAA
GGTCAAGATGAAGGTGTTTGGAAGTATGAACATCTTCGGCAATTCTGCTT
GGAATTCAATGGACTGGCCGTCAAACTGCAgCAAGAATGTAAACCTGACA
CATGTACACAAATGACAGCCACCGAACAATGGATCTTTTTATGTGCTGCT
CATAAAACGCCAAAAGAATGTCCAGCAGTTGATTACACCAGACATACATT
AGATGGCGCAGCTTCTTTACTAAACAGCAACAAATATTTCCCAAGCAGAG
TCAGTATAAAAGAATCTTCTGTGATGAAACTTGGTTCAGTGTGTCGTCGT
GTGTATAGGGTCTTCTCGCATGCTTATTTTCACCATCCAGctttgttcaa
agattttgagAACGAAACACACTTATGTAAACGTTTCACGCGGTTTGTAA
TGAAATACAACTTGATGTCACGTGACAATTTGATAGTTCCCATCCTTGAA
GAGGAGGATGGTGAGGGAGAAGGTTACATGATCAATAACGAAGCTAACGA
AGAATTCGGAGATGAATCCTACTCATAGATGGCTGATGTTAAGAAAGGTG
GCATCATTCGGAGAAATCGACCTGGAATGAAAGCACAGGATATGTGCAAT
TGGCCAGACGAAACATTTGAGGAGATGGATACCACTCTTGCTGTACAACA
GTATATTCAACAGATGATAAGACAAGACAACACAAAAATTGAAGAGATTC
TTGAACCTCCAGAAGGTCAAGATGAAGGTGTTTGGAAGTATGAACATCTT
CGGCAATTCTGCTTGGAATTCAATGGACTGGCCGTCAAACTGCAgCAAGA
ATGTAAACCTGACACATGTACACAAATGACAGCCACCGAACAATGGATCT
TTTTATGTGCTGCTCATAAAACGCCAAAAGAATGTCCAGCAGTTGATTAC
ACCAGACATACATTAGATGGCGCAGCTTCTTTACTAAACAGCAACAAATA
TTTCCCAAGCAGAGTCAGTATAAAAGAATCTTCTGTGATGAAACTTGGTT
CAGTGTGTCGTCGTGTGTATAGGGTCTTCTCGCATGCTTATTTTCACCAT
CCAGctttgttcaaagattttgagAACGAAACACACTTATGTAAACGTTT
CACGCGGTTTGTAATGAAATACAACTTGATGTCACGTGACAATTTGATAG
TTCCCATCCTTGAAGAGGAGGATGGTGAGGGAGAAGGTTACATGATCAAT
AACGAAGCTAACGAAGAATTCGGAGATGAATCCTACTCATAGATGGCTGA
TGTTAAGAAAGGTGGCATCATTCGGAGAAATCGACCTGGAATGAAAGCAC
AGGATATGTGCAATTGGCCAGACGAAACATTTGAGGAGATGGATACCACT
CTTGCTGTACAACAGTATATTCAACAGATGATAAGACAAGACAACACAAA
AATTGAAGAGATTCTTGAACCTCCAGAAGGTCAAGATGAAGGTGTTTGGA
AGTATGAACATCTTCGGCAATTCTGCTTGGAATTCAATGGACTGGCCGTC
AAACTGCAgCAAGAATGTAAACCTGACACATGTACACAAATGACAGCCAC
CGAACAATGGATCTTTTTATGTGCTGCTCATAAAACGCCAAAAGAATGTC
CAGCAGTTGATTACACCAGACATACATTAGATGGCGCAGCTTCTTTACTA
AACAGCAACAAATATTTCCCAAGCAGAGTCAGTATAAAAGAATCTTCTGT
GATGAAACTTGGTTCAGTGTGTCGTCGTGTGTATAGGGTCTTCTCGCATG
CTTATTTTCACCATCCAGctttgttcaaagattttgagAACGAAACACAC
TTATGTAAACGTTTCACGCGGTTTGTAATGAAATACAACTTGATGTCACG
TGACAATTTGATAGTTCCCATCCTTGAAGAGGAGGATGGTGAGGGAGAAG
GTTACATGATCAATAACGAAGCTAACGAAGAATTCGGAGATGAATCCTAC
TCATAGATGGCTGATGTTAAGAAAGGTGGCATCATTCGGAGAAATCGACC
TGGAATGAAAGCACAGGATATGTGCAATTGGCCAGACGAAACATTTGAGG
AGATGGATACCACTCTTGCTGTACAACAGTATATTCAACAGATGATAAGA
CAAGACAACACAAAAATTGAAGAGATTCTTGAACCTCCAGAAGGTCAAGA
TGAAGGTGTTTGGAAGTATGAACATCTTCGGCAATTCTGCTTGGAATTCA
ATGGACTGGCCGTCAAACTGCAgCAAGAATGTAAACCTGACACATGTACA
CAAATGACAGCCACCGAACAATGGATCTTTTTATGTGCTGCTCATAAAAC
GCCAAAAGAATGTCCAGCAGTTGATTACACCAGACATACATTAGATGGCG
CAGCTTCTTTACTAAACAGCAACAAATATTTCCCAAGCAGAGTCAGTATA
AAAGAATCTTCTGTGATGAAACTTGGTTCAGTGTGTCGTCGTGTGTATAG
GGTCTTCTCGCATGCTTATTTTCACCATCCAGctttgttcaaagattttg
agAACGAAACACACTTATGTAAACGTTTCACGCGGTTTGTAATGAAATAC
AACTTGATGTCACGTGACAATTTGATAGTTCCCATCCTTGAAGAGGAGGA
TGGTGAGGGAGAAGGTTACATGATCAATAACGAAGCTAACGAAGAATTCG
GAGATGAATCCTACTCATAGATGGCTGATGTTAAGAAAGGTGGCATCATT
CGGAGAAATCGACCTGGAATGAAAGCACAGGATATGTGCAATTGGCCAGA
CGAAACATTTGAGGAGATGGATACCACTCTTGCTGTACAACAGTATATTC
AACAGATGATAAGACAAGACAACACAAAAATTGAAGAGATTCTTGAACCT
CCAGAAGGTCAAGATGAAGGTGTTTGGAAGTATGAACATCTTCGGCAATT
CTGCTTGGAATTCAATGGACTGGCCGTCAAACTGCAgCAAGAATGTAAAC
CTGACACATGTACACAAATGACAGCCACCGAACAATGGATCTTTTTATGT
GCTGCTCATAAAACGCCAAAAGAATGTCCAGCAGTTGATTACACCAGACA
TACATTAGATGGCGCAGCTTCTTTACTAAACAGCAACAAATATTTCCCAA
GCAGAGTCAGTATAAAAGAATCTTCTGTGATGAAACTTGGTTCAGTGTGT
CGTCGTGTGTATAGGGTCTTCTCGCATGCTTATTTTCACCATCCAGcttt
gttcaaagattttgagAACGAAACACACTTATGTAAACGTTTCACGCGGT
TTGTAATGAAATACAACTTGATGTCACGTGACAATTTGATAGTTCCCATC
CTTGAAGAGGAGGATGGTGAGGGAGAAGGTTACATGATCAATAACGAAGC
TAACGAAGAATTCGGAGATGAATCCTACTCATAGATGGCTGATGTTAAGA
AAGGTGGCATCATTCGGAGAAATCGACCTGGAATGAAAGCACAGGATATG
TGCAATTGGCCAGACGAAACATTTGAGGAGATGGATACCACTCTTGCTGT
ACAACAGTATATTCAACAGATGATAAGACAAGACAACACAAAAATTGAAG
AGATTCTTGAACCTCCAGAAGGTCAAGATGAAGGTGTTTGGAAGTATGAA
CATCTTCGGCAATTCTGCTTGGAATTCAATGGACTGGCCGTCAAACTGCA
gCAAGAATGTAAACCTGACACATGTACACAAATGACAGCCACCGAACAAT
GGATCTTTTTATGTGCTGCTCATAAAACGCCAAAAGAATGTCCAGCAGTT
GATTACACCAGACATACATTAGATGGCGCAGCTTCTTTACTAAACAGCAA
CAAATATTTCCCAAGCAGAGTCAGTATAAAAGAATCTTCTGTGATGAAAC
TTGGTTCAGTGTGTCGTCGTGTGTATAGGGTCTTCTCGCATGCTTATTTT
CACCATCCAGctttgttcaaagattttgagAACGAAACACACTTATGTAA
ACGTTTCACGCGGTTTGTAATGAAATACAACTTGATGTCACGTGACAATT
TGATAGTTCCCATCCTTGAAGAGGAGGATGGTGAGGGAGAAGGTTACATG
ATCAATAACGAAGCTAACGAAGAATTCGGAGATGAATCCTACTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044081XLOC_044081Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070888-proteinTCONS_00070888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070888-exon-scaffold_58-1491911889:1411427..1411518TCONS_00070888-exon-scaffold_58-1491911889:1411427..1411518Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1411427..1411518TCONS_00070888-exon-scaffold_58-1510915933:1411427..1411518Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1411427..1411518TCONS_00070888-exon-scaffold_58-1575043694:1411427..1411518Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1411683..1411745TCONS_00070888-exon-scaffold_58-1491911889:1411683..1411745Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1411683..1411745TCONS_00070888-exon-scaffold_58-1510915933:1411683..1411745Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1411683..1411745TCONS_00070888-exon-scaffold_58-1575043694:1411683..1411745Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1412008..1412151TCONS_00070888-exon-scaffold_58-1491911889:1412008..1412151Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1412008..1412151TCONS_00070888-exon-scaffold_58-1510915933:1412008..1412151Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1412008..1412151TCONS_00070888-exon-scaffold_58-1575043694:1412008..1412151Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1414651..1414737TCONS_00070888-exon-scaffold_58-1491911889:1414651..1414737Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1414651..1414737TCONS_00070888-exon-scaffold_58-1510915933:1414651..1414737Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1414651..1414737TCONS_00070888-exon-scaffold_58-1575043694:1414651..1414737Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1415079..1415158TCONS_00070888-exon-scaffold_58-1491911889:1415079..1415158Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1415079..1415158TCONS_00070888-exon-scaffold_58-1510915933:1415079..1415158Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1415079..1415158TCONS_00070888-exon-scaffold_58-1575043694:1415079..1415158Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1415645..1415756TCONS_00070888-exon-scaffold_58-1491911889:1415645..1415756Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1415645..1415756TCONS_00070888-exon-scaffold_58-1510915933:1415645..1415756Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1415645..1415756TCONS_00070888-exon-scaffold_58-1575043694:1415645..1415756Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1416828..1417663TCONS_00070888-exon-scaffold_58-1491911889:1416828..1417663Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1416828..1417663TCONS_00070888-exon-scaffold_58-1510915933:1416828..1417663Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1416828..1417663TCONS_00070888-exon-scaffold_58-1575043694:1416828..1417663Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1418028..1418061TCONS_00070888-exon-scaffold_58-1491911889:1418028..1418061Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1418028..1418061TCONS_00070888-exon-scaffold_58-1510915933:1418028..1418061Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1418028..1418061TCONS_00070888-exon-scaffold_58-1575043694:1418028..1418061Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1418220..1418491TCONS_00070888-exon-scaffold_58-1491911889:1418220..1418491Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1418220..1418491TCONS_00070888-exon-scaffold_58-1510915933:1418220..1418491Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1418220..1418491TCONS_00070888-exon-scaffold_58-1575043694:1418220..1418491Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1491911889:1418962..1419097TCONS_00070888-exon-scaffold_58-1491911889:1418962..1419097Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1510915933:1418962..1419097TCONS_00070888-exon-scaffold_58-1510915933:1418962..1419097Clytia hemisphaericaexon
TCONS_00070888-exon-scaffold_58-1575043694:1418962..1419097TCONS_00070888-exon-scaffold_58-1575043694:1418962..1419097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1411427..1419097 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.0384	57.9127	29.048	22.4059	37.7637	26.972	34.5069	33.9383	37.9015	32.9394	25.3592	22.7529	28.2368	27.2859	20.8546	19.6764	42.6255	36.4304	38.767	48.4262	22.3049	21.9426	44.2346	42.1691	14.1309	14.2214	21.4437	15.4775	23.3109	24.0912
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005301MOB_kinase_act_fam
Blast
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BLAST of TCONS_00070888 vs. Swiss-Prot (Human)
Match: PHOCN (MOB-like protein phocein OS=Homo sapiens GN=MOB4 PE=1 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 2.140e-128
Identity = 177/225 (78.67%), Postives = 194/225 (86.22%), Query Frame = 3 
Query:   33 MADVKKGGIIRRNRPGMKAQDMCNWPDETFEEMDTTLAVQQYIQQMIRQDNTKIEEILEPPEGQDEGVWKYEHLRQFCLEFNGLAVKLQQECKPDTCTQMTATEQWIFLCAAHKTPKECPAVDYTRHTLDGAASLLNSNKYFPSRVSIKESSVMKLGSVCRRVYRVFSHAYFHHPALFKDFENETHLCKRFTRFVMKYNLMSRDNLIVPILEEE-----DGEGEG 692
            M   +   ++RRNRPG KAQD  NWPDE+F+EMD+TLAVQQYIQQ IR D + I++ILEPPEGQDEGVWKYEHLRQFCLE NGLAVKLQ EC PDTCTQMTATEQWIFLCAAHKTPKECPA+DYTRHTLDGAA LLNSNKYFPSRVSIKESSV KLGSVCRR+YR+FSHAYFHH  +F ++ENET LC RFT+FVMKYNLMS+DNLIVPILEEE      GE E 
Sbjct:    1 MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA 225
The following BLAST results are available for this feature:
BLAST of TCONS_00070888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHOCN2.140e-12878.67MOB-like protein phocein OS=Homo sapiens GN=MOB4 P... [more]
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