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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070878 ID=TCONS_00070878|Name=TCONS_00070878|organism=Clytia hemisphaerica|type=transcript|length=3531bp
CTTAGATAAACATGACAAACACATTGTTAGAAATGAGTTACTTATATCGC
CACTTATACAAACTGAAATTGGAAATGCAAAATACTAAATCGAGAAAGAT
GTTACTTTACCGTCAATTGATGGATTGTTTACTTGGTTTGGTGTTATATT
TGGTATTGAAAAGAACGATAGATGGGTTGGATATTGATTCGAATTTTACA
GATTTCGTATTACTGGTTCAAGATGATCTAACGAAGCTTTTGCAATGGTT
GATGGGAGCACCTGCTGGTCTGAAACTGAACGAAGAACTTTCATTTTTCC
TTGGAAATGTGTTCCTTTACCACGTCAACGTGTGGGTTGCTTACGTTCTC
ACCATCAAAACTTTCCTTCCACAAATCATACAGATTCTCATGATGTCCAA
TATTCTCGGTCTCGGcatttttttctgtttgatCAATGACGTTATCAGTA
TTTTGAGCGTCCACCTTCACTGTTTTTACTTCTATGCTTCCAATCTTTAT
CGGATACAATTGAAATCATTGATGACACTTGCAAGACTTTTCAGAGgtaa
gAAATGGAATGTGCTTCGCCTTCGTGTGGATTCTTTATCATACAATGCAG
ACCAACTCATCTTGGGAACAGTGCTCTTCACCATTCTCTTGTTCTTACTA
CCAACAGTGGCTTTGTATTACTTCGTTTTCATCATCATTCGACTCCTCAT
TTCTTTGCTACAAATGTTCTTTCAATTGATGGCTAATAGTTTGTTGAATA
AATTACACTCTTTGGTATGCTCAAATGAGAATAGCATAGGAGACGGAAAT
GGCGTCGATTGTGAACCGCCTGAAACTATGGTTGACAATGTACAAAGATT
TCTTGGAAAAATCCTTCGAGGCGATCTTGTGTAAGAACAATGGGAGATGA
TAGTACCACATACACTCCATTGCAACCTGGGTTTCGTCTGTTAAGATTGG
AAACAGATTCTGGACTTGGTTCCTTTGAGTAATTAATAGAGGTACTGTCA
ACGAAGATCATAAACTCAGAAATCTCCAGTCACTCGTCCCGAAATCTATG
TAATCGTTGTATGTTATATatgtaaatttgtaaataaaatttctgaaata
taTGTAAATCGATATCTTTGCCATTGTGTTATCGAGTTAAGCATTTGAAT
TAGAAAGGTAACGGGTAAAATGTGGTAATATCACAAATTACAAATTCTTT
GTTCTTGTTTCagtgaaaaaaagcaaaaaaatatcaaatcttTTAATGGC
GTCAGGTGGTGATACCGTTATACCGGCAAGTCGCCGACCTGACGGAACAT
GGCGTAAAGAGCGCAAAGTGAAGGCGGGGTACGTCCCTCCTGACGAAGCT
GAAAAGTACGAAAGTAAAGGGAAAAGATTCCAAGCTAACCAAGCGGCGTT
CACACCTGGGCTACCCACCCAACCGCAAACTGTTGTCAATAAACCCATGA
GTAAAAACGCCAAGAAAAATGAACGAAGGAAACAAAAACGGAAAGAAAAA
ACCGAGGAAGAATCAACAGTACCTTCGGTAGCCATGGCAACAAAGGAGAT
GGCTAAAGTTGATTTGAATAAGAACGAtggcaataaaagttttggtggaa
atgatgaTGAAAAGAATGCAGAGATTCAGAAGAAAATCAAAGGTTTACGA
AAGAAGCTAAAACAATGTGATCAAATCAAAGAGAGACAGGATAAAGGAGA
GACTCTTGAAAAAGaacaacttgaaaaattaagTAAACGAGAACAATTTC
AAGATGAACTTGAAGATTTAGAATTAttattgaatgaatgaatgaatgag
tgaGTGAATGAATACCATGGGTGGTTGGTAAGTCTGCTAGAGAATTTTTA
TAATTCCTAACATTTTTTAaatcgattttttttaattacagtatttaaaa
ttttctcGCGATTAGATTTTAATTGCAAATAAGATTTTTGGTGAAAGAAT
CTTACctctttcatttttcagtttatgttctcattttcaaacGCTTCTCT
CATATCACTAATTCTCCAAAAAGAGGCGAAAAGGTTTCCCTGAAAAGTAT
TCATTTTACGTAGGTAAAGTAATGAACCTTTAACGGGGTAATCTTTCACA
GATTAGTCTTCCTCAAGAAATTCATCAAACACATTTGAAAATTAATCTAC
GATAAGAGTTACTTAAGTTCTTTCAGGTTCATCAACCACCCAAAACATAC
TAAGTGTTTAACAATAATCATTTTGATCAGTGATCGATAATCATATCGTT
GCTTGTATTATCATGTTGTATGATTGCTGCCTTTACTCGTCAGAAATTCC
CAGAGGAAATGGggccaattttaaaactttttttattgttttaaaaatat
ttatatagcTACAGTAGTTACATAAATCAGATTTAAGTAGGTATGAAAGT
AATAAAGTCGACTGAATTATCGCCAGAATCAAGGTTGAAAAATTCATCAT
GCTCTCCAGGAGAAGTCCTTTTCACTCTCACAATAACACcgttttcattt
tgtttgacTAGTTCGCAAGCTTCTGAGTATGTTTTCACTTTATTGgataa
aaaatcttttggctTACACCATTTCATAGTCCTCGGCCGTTGCCAGACAC
GACTACGTAGACTTTGTATAGATTTATCTTTCTCAGTTCCTTGTTCCTTT
GTCTCGATGCTCGGAAATTCAgctactttcattttcattggaaAAATTAA
GTTTGTCGGAATAATATCTTCTTCTCGGCGTTTGCTAAGTGAAGAGGACA
CCCTGTATGTGTGATTTGTCTCATTCTTTCTGATGGAAAGTTTCTGATCG
GACAGTATAATAATTTCTTCTTTCTCGGCAGCAAGTTTCTCTTTCAATCT
TCTTCTCTCTAATTTCTTGAACCAGTTTTTGTCGATTAGTCGTTCAGAGT
CGATGAACTTCTTGTCTCCTCCATTTTTATCACTTTGTATCTGATCGATA
ACTTGTATTACGTTAATACCCATCACGTTCACAAACTTGTCAAGCTGCAT
AAGGTATTtgagttgattttcttcttatcGTTTTGAATCATTCAGAAATT
GTCTTCTTCATTCACTCTAGACTTCTTGATAGACTATttcgttttcattt
ttgacAAGCGATTTTTATTGAcgttatttttagaaattccgccattgtaa
cgtcttctttcgaatttttgacgtcaaaacgAAAATAATGAAACTAGAAA
TCTCGAGAAATGACCCGTTGCCTTCCAAGGGAAAACTGTGCCTGTTCATT
TGCTTTTGTAACCCCAAATCTTTTTTCATCTTGTCTCTCGTTTCATTAGT
CATATCCATCAAAGTCGACTTTGTCAAATTTGTAGGATGAACTTTTCTGC
TTTTTCCTTCGGTCTTCTTCCGTCCATCCATACTTTCGCATGTAATAAAA
ACTTGTCAATAATGCCACCGCCAGGAGTATGGCTGAACTCCACCCGACAG
TGTGACTCCATCCCCATTGGAAGTTGTTCACTTTGAAATGTTCCGTGAAC
AAAATCATCCCAACACCTTTCAATACGCCTA Run BLAST on NCBI transcript from alignment at scaffold_58:1199384..1204172+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070878 ID=TCONS_00070878|Name=TCONS_00070878|organism=Clytia hemisphaerica|type=transcript|length=4789bp|location=Sequence derived from alignment at scaffold_58:1199384..1204172+ (Clytia hemisphaerica)
CTTAGATAAACATGACAAACACATTGTTAGAAATGAGTTACTTATATCGC
CACTTATACAAACTGAAATTGGAAATGCAAAATACTAAATCGAGAAAGAT
GTTACTTTACCGTCAATTGATGGATTGTTTACTTGGTTTGGTGTTATATT
TGGTATTGAAAAGAACGATAGATGGGTTGGATATTGATTCGAATTTTACA
GATTTCGTATTACTGGTTCAAGATGATCTAACGAAGCTTTTGCAATGGTT
GATGGGAGCACCTGCTGGTCTGAAACTGAACGAAGAACTTTCATTTTTCC
TTGGAAATGTGTTCCTTTACCACGTCAACGTGTGGGTTGCTTACGTTCTC
ACCATCAAAACTTTCCTTCCACAAATCATACAGATTCTCATGATGTCCAA
TATTCTCGGTCTCGGcatttttttctgtttgatCAATGACGTTATCAGTA
TTTTGAGCGTCCACCTTCACTGTTTTTACTTCTATGCTTCCAATCTTTAT
CGGATACAATTGAAATCATTGATGACACTTGCAAGACTTTTCAGAGGTAA
CTGTATTCCTTTGTAAAGATGATGTTGATAATTTATAAAGTCCTTTTCCG
CTTGAAAAACCTTTTAATGTCCCGTATCTTTAAAATTTGACGTAATTTTC
TACAAGAGTTTCTGAAAATATCCGTTCCTGAACGAAATATTAACATTGGT
AGCTCTAATTTAGACTGTCGACTTTCTAATataccttatcggagtttttt
atttttctaaaaaagtgatgcattgtgggattgtttcgagtgtattacaa
tagaattccctcgaggaattcctaagagatttctattgtaatacactcga
aacaatcccacaatgcatcacttttttagaaaaataaaaaactccgataa
ggtctattgttaCAGTGGGCAAAAAAGTGGGTAGAAAGTTggtagttaaa
atctttgcttgaagaagattgaaagaagacaatgcattgactttagacag
ccaactttcTACCCATTTCAATTGAAAATCGTCCGAATAAACCAGAAGTG
AAGAAGGTTTAAAGCGCATCTCTGCACAAATGTAGCTTGTTTtattcgtg
ttttttttttcaggtaagAAATGGAATGTGCTTCGCCTTCGTGTGGATTC
TTTATCATACAATGCAGACCAACTCATCTTGGGAACAGTGCTCTTCACCA
TTCTCTTGTTCTTACTACCAACAGTGGCTTTGTATTACTTCGTTTTCATC
ATCATTCGACTCCTCATTTCTTTGCTACAAATGTTCTTTCAATTGATGGC
TAATAGTTTGTTGAATAAATTACACTCTTTGGTATGCTCAAATGAGAATA
GCATAGGTTAGTTTACGAAGATACCAAGATAATATACttgacgttctcta
attcgaaatttgatttttataagtTAGAATATCGAGCAGtagactttcaa
tattatcaattaATGGAgcgtactttaggcgtagaaactttcgcgagcag
aaactttcgcgattttcgcgaattttggcccttttcgcgaaagtaaatgt
ctttaaaaattctaggaagactaataagtcaaaggacaaatgtttcaagc
caacccaagaagtatctgtgtctctaagccattttttcatgtgaaaattc
tcaattttacgtcttgattcgagaaagtttatgcttgcgaaaaatatctt
tccgttaaattcgcggaAGTAAATGTcatgaatttcgcgatttttcgtcc
acgcgaaagtttctgctcgcgaaagtttgtacgcctaaagtattcaaTAA
GTttaacgtcgaattagagagtatcAACTGTATTCACATTACATTCTGTC
GATAAGGAATTTTCGCACAAGATCTGTGCCATCAAAAGATATCATGATTG
TCAAGGCTGTGAACCTCAGAACTAAAAATGGATTTCTCCTTTTAGGAGAC
GGAAATGGCGTCGATTGTGAACCGCCTGAAACTATGGTTGACAATGTACA
AAGATTTCTTGGAAAAATCCTTCGAGGCGATCTTGTGTAAGAACAATGGG
AGATGATAGTACCACATACACTCCATTGCAACCTGGGTTTCGTCTGTTAA
GATTGGAAACAGATTCTGGACTTGGTTCCTTTGAGTAATTAATAGAGGTA
CTGTCAACGAAGTAAGTGGTTTCTTTATTTGTTAATCACGTTGCTGCTCG
TTGCAACCTTAAATTTCGcttgaaatgtttttgactttcaattttttttt
cttttcatttcagGATCATAAACTCAGAAATCTCCAGTCACTCGTCCCGA
AATCTATGTAATCGTTGTATGTTATATatgtaaatttgtaaataaaattt
ctgaaatataTGTAAATCGATATCTTTGCCATTGTGTTATCGAGTTAAGC
ATTTGAATTAGAAAGGTAACGGGTAAAATGTGGTAATATCACAAATTACA
AATTCTTTGTTCTTGTTTCagtgaaaaaaagcaaaaaaatatcaaatctt
TTAATGGCGTCAGGTGGTGATACCGTTATACCGGCAAGTCGCCGACCTGA
CGGAACATGGCGTAAAGAGCGCAAAGTGAAGGCGGGGTACGTCCCTCCTG
ACGAAGCTGAAAAGTACGAAAGTAAAGGGAAAAGATTCCAAGCTAACCAA
GCGGCGTTCACACCTGGGCTACCCACCCAACCGCAAACTGTTGTCAATAA
ACCCATGAGTAAAAACGCCAAGAAAAATGAACGAAGGAAACAAAAACGGA
AAGAAAAAACCGAGGAAGAATCAACAGTACCTTCGGTAGCCATGGCAACA
AAGGAGATGGCTAAAGTTGATTTGAATAAGAACGAtggcaataaaagttt
tggtggaaatgatgaTGAAAAGAATGCAGAGATTCAGAAGAAAATCAAAG
GTTTACGAAAGAAGCTAAAACAATGTGATCAAATCAAAGAGAGACAGGAT
AAAGGAGAGACTCTTGAAAAAGaacaacttgaaaaattaagTAAACGAGA
ACAATTTCAAGATGAACTTGAAGATTTAGAATTAttattgaatgaatgaa
tgaatgagtgaGTGAATGAATACCATGGGTGGTTGGTAAGTCTGCTAGAG
AATTTTTATAATTCCTAACATTTTTTAaatcgattttttttaattacagt
atttaaaattttctcGCGATTAGATTTTAATTGCAAATAAGATTTTTGGT
GAAAGAATCTTACctctttcatttttcagtttatgttctcattttcaaac
GCTTCTCTCATATCACTAATTCTCCAAAAAGAGGCGAAAAGGTTTCCCTG
AAAAGTATTCATTTTACGTAGGTAAAGTAATGAACCTTTAACGGGGTAAT
CTTTCACAGATTAGTCTTCCTCAAGAAATTCATCAAACACATTTGAAAAT
TAATCTACGATAAGAGTTACTTAAGTTCTTTCAGGTTCATCAACCACCCA
AAACATACTAAGTGTTTAACAATAATCATTTTGATCAGTGATCGATAATC
ATATCGTTGCTTGTATTATCATGTTGTATGATTGCTGCCTTTACTCGTCA
GAAATTCCCAGAGGAAATGGggccaattttaaaactttttttattgtttt
aaaaatatttatatagcTACAGTAGTTACATAAATCAGATTTAAGTAGGT
ATGAAAGTAATAAAGTCGACTGAATTATCGCCAGAATCAAGGTTGAAAAA
TTCATCATGCTCTCCAGGAGAAGTCCTTTTCACTCTCACAATAACACcgt
tttcattttgtttgacTAGTTCGCAAGCTTCTGAGTATGTTTTCACTTTA
TTGgataaaaaatcttttggctTACACCATTTCATAGTCCTCGGCCGTTG
CCAGACACGACTACGTAGACTTTGTATAGATTTATCTTTCTCAGTTCCTT
GTTCCTTTGTCTCGATGCTCGGAAATTCAgctactttcattttcattgga
aAAATTAAGTTTGTCGGAATAATATCTTCTTCTCGGCGTTTGCTAAGTGA
AGAGGACACCCTGTATGTGTGATTTGTCTCATTCTTTCTGATGGAAAGTT
TCTGATCGGACAGTATAATAATTTCTTCTTTCTCGGCAGCAAGTTTCTCT
TTCAATCTTCTTCTCTCTAATTTCTTGAACCAGTTTTTGTCGATTAGTCG
TTCAGAGTCGATGAACTTCTTGTCTCCTCCATTTTTATCACTTTGTATCT
GATCGATAACTTGTATTACGTTAATACCCATCACGTTCACAAACTTGTCA
AGCTGCATAAGGTATTtgagttgattttcttcttatcGTTTTGAATCATT
CAGAAATTGTCTTCTTCATTCACTCTAGACTTCTTGATAGACTATttcgt
tttcatttttgacAAGCGATTTTTATTGAcgttatttttagaaattccgc
cattgtaacgtcttctttcgaatttttgacgtcaaaacgAAAATAATGAA
ACTAGAAATCTCGAGAAATGACCCGTTGCCTTCCAAGGGAAAACTGTGCC
TGTTCATTTGCTTTTGTAACCCCAAATCTTTTTTCATCTTGTCTCTCGTT
TCATTAGTCATATCCATCAAAGTCGACTTTGTCAAATTTGTAGGATGAAC
TTTTCTGCTTTTTCCTTCGGTCTTCTTCCGTCCATCCATACTTTCGCATG
TAATAAAAACTTGTCAATAATGCCACCGCCAGGAGTATGGCTGAACTCCA
CCCGACAGTGTGACTCCATCCCCATTGGAAGTTGTTCACTTTGAAATGTT
CCGTGAACAAAATCATCCCAACACCTTTCAATACGCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070878-exon-scaffold_58-1491911889:1199384..1199929 | TCONS_00070878-exon-scaffold_58-1491911889:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1510915933:1199384..1199929 | TCONS_00070878-exon-scaffold_58-1510915933:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1575043694:1199384..1199929 | TCONS_00070878-exon-scaffold_58-1575043694:1199384..1199929 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1491911889:1200497..1200739 | TCONS_00070878-exon-scaffold_58-1491911889:1200497..1200739 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1510915933:1200497..1200739 | TCONS_00070878-exon-scaffold_58-1510915933:1200497..1200739 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1575043694:1200497..1200739 | TCONS_00070878-exon-scaffold_58-1575043694:1200497..1200739 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1491911889:1201329..1201544 | TCONS_00070878-exon-scaffold_58-1491911889:1201329..1201544 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1510915933:1201329..1201544 | TCONS_00070878-exon-scaffold_58-1510915933:1201329..1201544 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1575043694:1201329..1201544 | TCONS_00070878-exon-scaffold_58-1575043694:1201329..1201544 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1491911889:1201647..1204172 | TCONS_00070878-exon-scaffold_58-1491911889:1201647..1204172 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1510915933:1201647..1204172 | TCONS_00070878-exon-scaffold_58-1510915933:1201647..1204172 | Clytia hemisphaerica | exon |
| TCONS_00070878-exon-scaffold_58-1575043694:1201647..1204172 | TCONS_00070878-exon-scaffold_58-1575043694:1201647..1204172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1199384..1204172 + |
Blast
BLAST of TCONS_00070878 vs. Swiss-Prot (Human)
Match: PIGQ (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Homo sapiens GN=PIGQ PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 3.141e-43 Identity = 92/180 (51.11%), Postives = 130/180 (72.22%), Query Frame = 3
Query: 216 VQDDLTKLLQWLMGAPAGLKLNEELSFFLGNVFLYHVNVWVAYVLTIKTFLPQIIQILMMSNILGLGIFFCLINDVISILSVHLHCFYFYASNLYRIQLKSLMTLARLFRGKKWNVLRLRVDSLSYNADQLILGTVLFTILLFLLPTVALYYFVFIIIRLLISLLQMFFQLMANSLLNKL 755
V ++L LLQWLMGAPAGLK+N L LG FLYH+++W++Y+ + F+ I+ + +S LGL + L++D+I++L+ H++CFY Y + LY +++ L +L RLFRGKKWNVLR RVDS SY+ DQL +GT+LFTILLFLLPT ALYY VF ++RLL+ +Q L+ + L+N L
Sbjct: 316 VAEELQHLLQWLMGAPAGLKMNRALDQVLGRFFLYHIHLWISYIHLMSPFVEHILWHVGLSACLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGLSSLWRLFRGKKWNVLRQRVDSCSYDLDQLFIGTLLFTILLFLLPTTALYYLVFTLLRLLVVAVQGLIHLLVD-LINSL 494
The following BLAST results are available for this feature:
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