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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070867 ID=TCONS_00070867|Name=TCONS_00070867|organism=Clytia hemisphaerica|type=transcript|length=2924bp
GTTGGGTTGGAGACTGGAAAGGAGGCTTCATGATTATTTCAAAGCAGGAA
GAAAGTTGTTATCTAAGAAAGcaaaagaaacaagaaaatgTGTGGAATTT
GGGCCATCTTTGGTTACGATCATCAAGTTTCGTCAGAACTCCATCATGCT
CTCCTCATCGCTCACCGAGGACCGGATTTCTTCCGTATCGAAAGTCTTCC
GAACTTTAAACACTCCTACTTAGCGTTCCATCGACTCTCCATCATGGATA
ATTTGACAGGACAACAACCCATGCGTTTGTATTCACTACCTCACATCCAT
CTCACGTACAACGGTGAAATCTATAACTTCAAAGAACTCTTCCAAAAATA
TGGATTCGAACAAACGACATCAATGGATGGTGAGATCATTATTCATCTTT
ACAACAAATTTGGCATGGAGAAAACATTACAATTACTGGATGGAGTGTTC
GCTGTCTCCATCTTCGATTCGGAAAATGGAACTTTCCACATTGGAAGAGA
CACATTTGGGGTGCGTCCGTTATTCACGTTACGTCCGGATTCCGGTGAGT
TAGGAGTTTCATCCGAAGCTAAAGGTTTGATTGGTTTGAACAAATCGAAC
GGAAAAGCAAGACCTATCAAGCAACTGAAGCCTGGAACCTATGCTACCTT
CAACATCTGTAAAGAAACTGGCCTCTCTAAATTAGTAGAAGAAAAATCTT
TCACAGATGTAGACGTTCCACAAGCCTTCGACATCCCAATCACCCTCACC
GATGACGTCAAAGAAAATATCCGTAACCTGTTGACTGATGCCGTCCGAAA
GCGATTGATGGCCGAACGGAGGATAGGATGTTTGCTCTCCGGTGGACTTG
ATTCTAGTCTAGTTGCAGCATTGGTTGTCAAGCTATCCAGAGAAATGGGC
ATCAAATACCCCATCCAAACCTTTTCAATCGGTTTCCCAGGGTCACCTGA
TGTAATGAAAGCACGAAAAGTGGCCGAAATGTTGCAGACAGAGCACCACG
AAGTCCTCATCACGCCACAAGAAGCTTTAGATGCTCTTCCTGATGTAAAC
TATGCCTTAGAGAGTTATGATATCACCACAAACAGGGCGTCCACACCCAT
GTTTTTGTTGGCCAAATACATCCGCAAAAACACAAACACTGTCGTCATTT
TCTCCGGCGAAGGATCAGACGAGCTCACTCAAGGTTACATCTACTTCCAC
AAAGCACCAACGCCCGAAGCCGCCCATGAAGATTCCAAACGCCTCTTACG
TGAATTGTACATCTTTGACAACTTGAGAGCGGATCGAACCATCTCCGCCC
ATGGATTGGAGCTACGTGTACCTTTCCTGGACAAAGCTTTCACCTCATAT
TACCTCTCCATTGGTAAACAACTCGTCCAGCCAAAAGATGGCGTCGAAAA
ATTCCTCCTTCGCTCGGCGTTTGATGGCCACCTCAAAGGCCTGCTACCGG
ATGAGATCTTATGGCGACCCAAAGAAGCATTTAGTGATGGAATCTCTCAG
AAAACTGATTCATGGTTTTCACACATCCAACGCCATGCAGCTACACTTTT
CACCAAACAACAACTGGAGGAAGCTGCAGAGAAATTCCCCATCAACCCAC
CTTTCTCCTTCGAAAGCCTGTATTACCGCACTATGTTTGAATCCAAGTAT
CCCGGTCAGTGCCATATATTGCCATACTTTTGGATGCCCAGATGGCAAGA
GGGAGATGTGAAAGACCCCTCGGCTAGAGTGCTAACAAACTATaaacaat
aaactaaaaatagaaCGTCGTAAAAACAATTATCTAAAAGATGATTAGCT
AAACAGTTGACCtacataaaaataacaatatacaggcaaaattcataaaa
tggacttccaatttaatttattttattgcCGAAAATGGAGCGAaattttt
agaaacaaaatgtcTTAGGGGTTAATTATTGTTCCAAATATTCCAATTTT
TtaggaattatttttttgtaacaaGTTGTCATTATTTATTTATAGACCAC
TGaattaataacaaaaagaaactaATGTTTACCGCAATTGGTTGTCATAA
TCTTCTGTGGGTGGGGGGGGCGGCGGCCTTGAAATTCTGCCTGGCGTCAA
ACATTTCAAGAATTGATTCGAATTTACTTCTTTTTGAGGCTATATTTGCT
ATCGTTGTTATACATAAATATCTCTATATGTTTCAATTTTACTTTATGTA
AAGAGTCAAGCTCTCCATCTgttatttatttacaaaaaacaaactatGGT
CAAATTCAATCCACCCAAATATCAAACACTACAGCTCAAGAGGTCCGAAA
ACTTTTTATACAGGAGTCGGGAGTGTAATAAACATTGTAAGGAATACTGA
AAGGTAGCTGGTCAAAATCGGTTAAAAGCAATTTTGTATCTGGTTGGGAT
GGTCATAAAGTATtatttaaaattcataaaaaactgattttcaaCTTAGA
ACCTTGTGCAAATTTGACTTAAAAAGCTAGTCACGATCAAGAATATTTGG
TTGGTAATGAGAAAGATCGCTGAAAACACAATTTTCCCTAGAAAAACTTC
TTCTAAGAGAGATGTACAAATATGGGTGACTTTTTGTTACGGACTCTGGA
ATTTGGCTGATTACGCccttttttggaagaatgtaCGTTTGGAGATAAAA
CCTAATTGTTCAGCAACAATATCGTGGTTGTACCACGCAATTCTATATTG
AAGGCATACTCCAACCTTGTCCCAAGGTACAAAGTGGGGGTGGAAGGCCA
AAgacaaaaaacaagaaagtactCATTCTCAGTACTCTAacggggggggt
ttcagggggtacccgattccgtaattccgccaattttttctccaatttcc
gtctcaccgtcttaaattgaaccaaaattccgtcaccgaaaattcctttg
aaattcaaaatttttgtcgaaaat Run BLAST on NCBI transcript from alignment at scaffold_58:1050989..1055260+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070867 ID=TCONS_00070867|Name=TCONS_00070867|organism=Clytia hemisphaerica|type=transcript|length=4272bp|location=Sequence derived from alignment at scaffold_58:1050989..1055260+ (Clytia hemisphaerica)
GTTGGGTTGGAGACTGGAAAGGAGGCTTCATGATTATTTCAAAGCAGGAA
GAAAGTTGTTATCGTAAGATTTCTTTTGGTTTTTAAGACGACTCGCACGC
AAGTATCTTATTTTGCTTTCAAACATGTTTCAAGATTTGTTGTGAAATTT
CAGGAAAATCTCCATAATCTCATGATTATCAGATAAGAAAAAGGAAGCTT
TGCCCATGTGATAATTTCTAGTCATTTTGCGTAAGCAGGATATTTTCATA
CAAAACTCTTTCACGCAGGGTTGCAACGTTGTGAAATTTCTTGAAATGAA
CTTTATCCTCACCGCATACACAACTTTGAGTTTACGAAAGAACTTTGATT
GATATAGTGAGGTTTGTTAATATGGTTTGGCCTGTTGTGACAAAAATCTC
TCATGAAGACATATAAAAGTTAAGACATGTTCAATTGTGGGGTAGTACCA
AAGAACTCTCTTCAGTAGCAGTTCTGGTGCAGTGCATGAAAAAAGTGTTT
CTGGAACAGTAGTCTGTTTGGAAGTAAAAAGTAGCAAAGTATTGCTACAT
TGCAAAGAATGTAGTTTCTACAAGTTTATTGAAAGACGTCAGCAGAGAGC
TGCTGTAGCTTTATAGCTAGGCTGGCATCCTTATACTActtgcggttttg
tagaggttttTGATTCAGACTTTGTTATAGCTGAAGTAGAAGCGCATAGA
AATAGCGTTCAGTAGCACGTTTTACATGATCGATTTGTTTTCCAAGTACA
CAATGTTTAAACATCTAAGTGTGAAGATGTGTTTTCGCTTGAAGATAAAA
AGGGGGTCTAAAGTCAAAATAGTCTCGAATTTCGTATTTCTTCGATATTT
ACTTTTGTCTATTTGGAAAGgttctgaaaaatgaaaagaataaaaTCTGA
TGAGAAATCAACGTGGTTCTTGTTTCGCGCTCGTTATATTTGCATGTGTG
TGTTTGAAGTAGTTTAAAATGAAGTTCCACTTCTGTGATTTATGCAACTC
TCAAGGGACCAGGGACTTTCTTTGAGTTtgagagagattcgaattacaga
aagtatcTTATATTATACTTTCTAGTTGAGGGGACCGATATTCTTATAAC
AGTTCGAACTATTgtgaaagattcgaataacagaggtAAAAAAAATAGAG
AGAGTGAACTGTACAAATGTCTTTCAATCACATACTAAATTGACTTCTTT
CTTCTAATTTCAGTAAGAAAGcaaaagaaacaagaaaatgTGTGGAATTT
GGGCCATCTTTGGTTACGATCATCAAGTTTCGTCAGAACTCCATCATGCT
CTCCTCATCGCTCACCGAGGACCGGATTTCTTCCGTATCGAAAGTCTTCC
GAACTTTAAACACTCCTACTTAGCGTTCCATCGACTCTCCATCATGGATA
ATTTGACAGGACAACAACCCATGCGTTTGTATTCACTACCTCACATCCAT
CTCACGTACAACGGTGAAATCTATAACTTCAAAGAACTCTTCCAAAAATA
TGGATTCGAACAAACGACATCgtaagttaaaaatatttattttgaatttc
acCATGTGAAAAGATTTCCCGACATCCTTTGCAGCCTCAACCATTCAAAA
CTTCCACAAATGACACAAACTGCAAATTGCTCTCAAAAACTCTGTCTGTA
AGTTTGGGCAGTTCTAGTCAATTTCTTCCATAAGAATGATTTAATAAATG
AGTTTCCCCTCTCTCATAGAATGGATGGTGAGATCATTATTCATCTTTAC
AACAAATTTGGCATGGAGAAAACATTACAATTACTGGATGGAGTGTTCGC
TGTCTCCATCTTCGATTCGGAAAATGGAACTTTCCACATTGGAAGAGACA
CATTTGGGGTGCGTCCGTTATTCACGTTACGTCCGGATTCCGGTGAGTTA
GGAGTTTCATCCGAAGCTAAAGGTTTGATTGGTTTGAACAAATCGAACGG
AAAAGCAAGACCTATCAAGCAACTGAAGCCTGGAACCTATGCTACCTTCA
ACATCTGTAAAGAAACTGGCCTCTCTAAATTAGTAGAAGAAAAATCTTTC
ACAGATGTAGACGTTCCACAAGCCTTCGACATCCCAATCACCCTCACCGA
TGACGTCAAAGAAAATATCCGTAACCTGTTGACTGATGCCGTCCGAAAGC
GATTGATGGCCGAACGGAGGATAGGATGTTTGCTCTCCGGTGGACTTGAT
TCTAGTCTAGTTGCAGCATTGGTTGTCAAGCTATCCAGAGAAATGGGCAT
CAAATACCCCATCCAAACCTTTTCAATCGGTTTCCCAGGGTCACCTGATG
TAATGAAAGCACGAAAAGTGGCCGAAATGTTGCAGACAGAGCACCACGAA
GTCCTCATCACGCCACAAGAAGCTTTAGATGCTCTTCCTGATGTAAACTA
TGCCTTAGAGAGTTATGATATCACCACAAACAGGGCGTCCACACCCATGT
TTTTGTTGGCCAAATACATCCGCAAAAACACAAACACTGTCGTCATTTTC
TCCGGCGAAGGATCAGACGAGCTCACTCAAGGTTACATCTACTTCCACAA
AGCACCAACGCCCGAAGCCGCCCATGAAGATTCCAAACGCCTCTTACGTG
AATTGTACATCTTTGACAACTTGAGAGCGGATCGAACCATCTCCGCCCAT
GGATTGGAGCTACGTGTACCTTTCCTGGACAAAGCTTTCACCTCATATTA
CCTCTCCATTGGTAAACAACTCGTCCAGCCAAAAGATGGCGTCGAAAAAT
TCCTCCTTCGCTCGGCGTTTGATGGCCACCTCAAAGGCCTGCTACCGGAT
GAGATCTTATGGCGACCCAAAGAAGCATTTAGTGATGGAATCTCTCAGAA
AACTGATTCATGGTTTTCACACATCCAACGCCATGCAGCTACACTTTTCA
CCAAACAACAACTGGAGGAAGCTGCAGAGAAATTCCCCATCAACCCACCT
TTCTCCTTCGAAAGCCTGTATTACCGCACTATGTTTGAATCCAAGTATCC
CGGTCAGTGCCATATATTGCCATACTTTTGGATGCCCAGATGGCAAGAGG
GAGATGTGAAAGACCCCTCGGCTAGAGTGCTAACAAACTATaaacaataa
actaaaaatagaaCGTCGTAAAAACAATTATCTAAAAGATGATTAGCTAA
ACAGTTGACCtacataaaaataacaatatacaggcaaaattcataaaatg
gacttccaatttaatttattttattgcCGAAAATGGAGCGAaatttttag
aaacaaaatgtcTTAGGGGTTAATTATTGTTCCAAATATTCCAATTTTTt
aggaattatttttttgtaacaaGTTGTCATTATTTATTTATAGACCACTG
aattaataacaaaaagaaactaATGTTTACCGCAATTGGTTGTCATAATC
TTCTGTGGGTGGGGGGGGCGGCGGCCTTGAAATTCTGCCTGGCGTCAAAC
ATTTCAAGAATTGATTCGAATTTACTTCTTTTTGAGGCTATATTTGCTAT
CGTTGTTATACATAAATATCTCTATATGTTTCAATTTTACTTTATGTAAA
GAGTCAAGCTCTCCATCTgttatttatttacaaaaaacaaactatGGTCA
AATTCAATCCACCCAAATATCAAACACTACAGCTCAAGAGGTCCGAAAAC
TTTTTATACAGGAGTCGGGAGTGTAATAAACATTGTAAGGAATACTGAAA
GGTAGCTGGTCAAAATCGGTTAAAAGCAATTTTGTATCTGGTTGGGATGG
TCATAAAGTATtatttaaaattcataaaaaactgattttcaaCTTAGAAC
CTTGTGCAAATTTGACTTAAAAAGCTAGTCACGATCAAGAATATTTGGTT
GGTAATGAGAAAGATCGCTGAAAACACAATTTTCCCTAGAAAAACTTCTT
CTAAGAGAGATGTACAAATATGGGTGACTTTTTGTTACGGACTCTGGAAT
TTGGCTGATTACGCccttttttggaagaatgtaCGTTTGGAGATAAAACC
TAATTGTTCAGCAACAATATCGTGGTTGTACCACGCAATTCTATATTGAA
GGCATACTCCAACCTTGTCCCAAGGTACAAAGTGGGGGTGGAAGGCCAAA
gacaaaaaacaagaaagtactCATTCTCAGTACTCTAacggggggggttt
cagggggtacccgattccgtaattccgccaattttttctccaatttccgt
ctcaccgtcttaaattgaaccaaaattccgtcaccgaaaattcctttgaa
attcaaaatttttgtcgaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00070867-exon-scaffold_58-1491911889:1050989..1051051 | TCONS_00070867-exon-scaffold_58-1491911889:1050989..1051051 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1510915933:1050989..1051051 | TCONS_00070867-exon-scaffold_58-1510915933:1050989..1051051 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1575043694:1050989..1051051 | TCONS_00070867-exon-scaffold_58-1575043694:1050989..1051051 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1491911889:1052202..1052509 | TCONS_00070867-exon-scaffold_58-1491911889:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1510915933:1052202..1052509 | TCONS_00070867-exon-scaffold_58-1510915933:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1575043694:1052202..1052509 | TCONS_00070867-exon-scaffold_58-1575043694:1052202..1052509 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1491911889:1052708..1055260 | TCONS_00070867-exon-scaffold_58-1491911889:1052708..1055260 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1510915933:1052708..1055260 | TCONS_00070867-exon-scaffold_58-1510915933:1052708..1055260 | Clytia hemisphaerica | exon |
| TCONS_00070867-exon-scaffold_58-1575043694:1052708..1055260 | TCONS_00070867-exon-scaffold_58-1575043694:1052708..1055260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1050989..1055260 + |
Blast
BLAST of TCONS_00070867 vs. Swiss-Prot (Human)
Match: ASNS (Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens GN=ASNS PE=1 SV=4) HSP 1 Score: 528.48 bits (1360), Expect = 3.613e-176 Identity = 289/564 (51.24%), Postives = 387/564 (68.62%), Query Frame = 1
Query: 88 MCGIWAIFGYDHQVSSELHHALLIAHRGPDFFRIESLPNFKHSYLAFHRLSIMDNLTGQQPMRLYSLPHIHLTYNGEIYNFKELFQKYGFEQTTSMDGEIIIHLYNKFGMEKTLQLLDGVFAVSIFDSENGTFHIGRDTFGVRPLFTLRPDSGELGVSSEAKGLIGLNKSNGKARPIKQLKPGTYATFNICKETGLS--KLVEEKSFTDVDVPQAFD-----IPITLTDDVKENIRNLLTDAVRKRLMAERRIXXXXXXXXXXXXVAALVVKLSREMGIKYPIQTFSIGFPGSPDVMKARKVAEMLQTEHHEVLITPQEALDALPDVNYALESYDITTNRASTPMFLLAKYIRKNTNTVVIFSGEGSDELTQGYIYFHKAPTPEAAHEDSKRLLRELYIFDNLRADRTISAHGLELRVPFLDKAFTSYYLSIGKQLVQPKDGVEKFLLRSAFDGHLKGLLPDEILWRPKEAFSDGISQKTDSWFSHIQRHAATLFTKQQLEEAAEKFPINPPFSFESLYYRTMFESKYPGQCHILPYFWMPRWQEGDVKDPSARVLTNYKQ*TK 1758
MCGIWA+FG D +S + A+ IAHRGPD FR E++ + + FHRL+++D L G QP+R+ P++ L YNGEIYN K++ Q + FE T +DGEII+HLY+K G+E+T+ +LDGVFA + D+ N +GRDT+GVRPLF + G L V SEAKGL+ L S ++ PG Y ++ ++ ++V+ DV + +D P + VK N+R L +AV+KRLM +RRIGCLLSGGLDSSLVAA ++K +E ++YP+QTF+IG SPD++ ARKVA+ + +EH+EVL +E + AL +V ++LE+YDITT RAS M+L++KYIRKNT++VVIFSGEGSDELTQGYIYFHKAP+PE A E+S+RLLRELY+FD LRADRT +AHGLELRVPFLD F+SYYLS+ ++ PK+G+EK LLR F+ L+P EILWRPKEAFSDGI+ +SWF +Q + + AA+KFP N P + E YYR +FE YPG+ L ++WMP+W + DPSAR LT+YK K
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQPIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPFLPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFNNAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIGMEDSPDLLAARKVADHIGSEHYEVLFNSEEGIQALDEVIFSLETYDITTVRASVGMYLISKYIRKNTDSVVIFSGEGSDELTQGYIYFHKAPSPEKAEEESERLLRELYLFDVLRADRTTAAHGLELRVPFLDHRFSSYYLSLPPEMRIPKNGIEKHLLRETFED--SNLIPKEILWRPKEAFSDGITSVKNSWFKILQEYVEHQVDDAMMANAAQKFPFNTPKTKEGYYYRQVFERHYPGRADWLSHYWMPKWI--NATDPSARTLTHYKSAVK 560
The following BLAST results are available for this feature:
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