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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070865 ID=TCONS_00070865|Name=TCONS_00070865|organism=Clytia hemisphaerica|type=transcript|length=1578bp
GTGTAGGGTGAACTTTGGCAGCAATCACTCGGTTGATACTTTCGATAATC
ATTTGAAGTTTGAAAACAAGCTGTTTGTTTCCAATCAATTGATTTCGTTC
GAAAATGAATTCCAGTTTCTCCAGAACCAACATGTATGGGAGGTCTTCAA
CAATTTCTACCCCTACCTTTGGTTGATACCGATGGTGTTCAATTATATGT
TCATAAGTCAATCGAAAATATTTCTCTTGGTCTAACGAATATTCGTCCGA
AAATTCCACACATTTTGTCGAAGTGTCCGAAACATCTGTCCAAATTCTTT
TCCCTAATTCTCCCCATTTATAAAGCATCATGCTTAAACTGTTCCTATTG
TGCACTTGTTCCCCTCCAATCCCTTTATACGCGAaatccattttcaaatt
ttcggtaGTTATAATCCCGTTTAAAACTATATTTTCGGTATTCTGCAAGA
CGGGGTTTTTCTCCACGTAGTTATCTGCGTGTTCCCgaaatttttcattt
ccattTAAATGATTAATAATAATCAGATTCTTCAAATCTGCATCTTTAGT
TATTTTTGGGTGTAAAtgtttgaaaagatatttgaagTCTACAAAGTCAT
ATTCTTCTTTTCGCTCCCACTCCACGTCACGTGACATGAAGAACAATAAC
AAACCAGGTGGAGTGGCATCAAGAAATTTTGTGAAACATTTACGCAAGCT
TTTATGTCTGAGTTTCAGTTTACATTTTTTGTGGACTTTGACCGGCTTTT
TAGATGGTTTCGGATGCTTCACCtttattcttttcttcttcttcttcttt
ttgattGGCTTATCAAAGTCCATGGGAACGATTTCTGAAGCTGCTGAGCT
GCTAGGCTTTTGAGAAGATGTAGCGGCTGAGTTGCTAGGTAAAGTTGGGA
CGACAGAATGACTAGCTGAAAATTTACTGTTCGTATCATGTGGAGGTAAA
GCTTTGGCGGATGGAacgttcattttttcaaaacgtgCCAGTCTTTTTCT
CAGTAGCTCATCTTTGGAAAGTTGTGGTACATCTGGCGCTCCATGAATAT
GATTGTACAATTTCTCACTTAATGACATAAATTGAAACAATAAAGAACCA
GTATCACAAATTTTATCGAAATTCTCGATCGCTTGTTTGGAAGTCTTTTG
ATTGGACGAAAAAATAAACTTCAAGTAAACCATCAACAAGAATTTCgttc
gacaaaaatatttttccttcaacttcaaaagaaattttaccAACTCGTAT
ATTGCTACATCGtttaaatctttcaaaatatcgTCCATGAAATCCAACTC
CCCAAAATGTACTGGTGTACTAACTACACGAAAATGTCCGGTTGTATTAC
cagtcaaaacaaaagaatagaaCTGCCGTATAAACATCGGATGGTCTCGA
TCAATTTCTGTCACAAAAGGAGATGGTCTGGGTAATCGAGGTCTTGGTCT
AGGTTTTGGTTTCATTTTATCTTGGATTTCTCGAATTTTGGCTATGATTA
CATCGCGAGGGAGATATTGAGAGGCTTGTGCTAATAAGTGGATTTCCATT
AAAGCACTGTCTTGTTCTTCattacctg Run BLAST on NCBI transcript from alignment at scaffold_58:1017873..1020102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070865 ID=TCONS_00070865|Name=TCONS_00070865|organism=Clytia hemisphaerica|type=transcript|length=2230bp|location=Sequence derived from alignment at scaffold_58:1017873..1020102+ (Clytia hemisphaerica)
GTGTAGGGTGAACTTTGGCAGCAATCACTCGGTTGATACTTTCGATAATC
ATTTGAAGTTTGAAAACAAGCTGTTTGTTTCCAATCAATTGATTTCGTTC
GAAAATGAATTCCAGTTTCTCCAGAACCAACATGTATGGGAGGTCTTCAA
CAATTTCTACCCATATCTACAAATAAAAAAGTGATTCTAAGTTTATTTCT
CAGTTTACAATATCCCATTCGTAGAATAGGTCCCTTAAAAAGGGAATAAT
TCAGGAGGCgggataaattaaaaaaaggagtCTAGCCCAGGACGGAGTGA
GACGGGGTGGAGGTGTTTACAGTACCACCGCTATTTTCCCGTAAACTGTC
CTGACGGCTGCAAACTCCgcacaaatatatttttcccgcgtttactccat
ctaacggacgataacatcgtgtAATTTCTCTTAAGAAACTCGGACTTTAA
TCTAACAAATTTTCATGACACCTTTTTGATAGAAGATCATGATGACAGAT
ATTGCATCCATCCACTGACCATTATATATCCCTGGATCAAGTTACTCAAT
GCCTGCCAAGCAAAATAtcatgatcggagtttttttgaaattcgtaCCAA
cggagagagcgctagatctagtttCGCTTGTACACTAATGATGTACCGCC
GTTTGTCATTGGACAAAATTTCAAACACTACGATGGCTTCTTGGTgggta
ccaactttcaaaaaaactttgatcaaagatggcggatatagtttgatcca
gggatatataaaggtcagtacaTCCATCGAAAAGAGATTGAAGGATAATG
GTCATCACTCAAACCTACCTTTGGTTGATACCGATGGTGTTCAATTATAT
GTTCATAAGTCAATCGAAAATATTTCTCTTGGTCTAACGAATATTCGTCC
GAAAATTCCACACATTTTGTCGAAGTGTCCGAAACATCTGTCCAAATTCT
TTTCCCTAATTCTCCCCATTTATAAAGCATCATGCTTAAACTGTTCCTAT
TGTGCACTTGTTCCCCTCCAATCCCTTTATACGCGAaatccattttcaaa
ttttcggtaGTTATAATCCCGTTTAAAACTATATTTTCGGTATTCTGCAA
GACGGGGTTTTTCTCCACGTAGTTATCTGCGTGTTCCCgaaatttttcat
ttccattTAAATGATTAATAATAATCAGATTCTTCAAATCTGCATCTTTA
GTTATTTTTGGGTGTAAAtgtttgaaaagatatttgaagTCTACAAAGTC
ATATTCTTCTTTTCGCTCCCACTCCACGTCACGTGACATGAAGAACAATA
ACAAACCAGGTGGAGTGGCATCAAGAAATTTTGTGAAACATTTACGCAAG
CTTTTATGTCTGAGTTTCAGTTTACATTTTTTGTGGACTTTGACCGGCTT
TTTAGATGGTTTCGGATGCTTCACCtttattcttttcttcttcttcttct
ttttgattGGCTTATCAAAGTCCATGGGAACGATTTCTGAAGCTGCTGAG
CTGCTAGGCTTTTGAGAAGATGTAGCGGCTGAGTTGCTAGGTAAAGTTGG
GACGACAGAATGACTAGCTGAAAATTTACTGTTCGTATCATGTGGAGGTA
AAGCTTTGGCGGATGGAacgttcattttttcaaaacgtgCCAGTCTTTTT
CTCAGTAGCTCATCTTTGGAAAGTTGTGGTACATCTGGCGCTCCATGAAT
ATGATTGTACAATTTCTCACTTAATGACATAAATTGAAACAATAAAGAAC
CAGTATCACAAATTTTATCGAAATTCTCGATCGCTTGTTTGGAAGTCTTT
TGATTGGACGAAAAAATAAACTTCAAGTAAACCATCAACAAGAATTTCgt
tcgacaaaaatatttttccttcaacttcaaaagaaattttaccAACTCGT
ATATTGCTACATCGtttaaatctttcaaaatatcgTCCATGAAATCCAAC
TCCCCAAAATGTACTGGTGTACTAACTACACGAAAATGTCCGGTTGTATT
ACcagtcaaaacaaaagaatagaaCTGCCGTATAAACATCGGATGGTCTC
GATCAATTTCTGTCACAAAAGGAGATGGTCTGGGTAATCGAGGTCTTGGT
CTAGGTTTTGGTTTCATTTTATCTTGGATTTCTCGAATTTTGGCTATGAT
TACATCGCGAGGGAGATATTGAGAGGCTTGTGCTAATAAGTGGATTTCCA
TTAAAGCACTGTCTTGTTCTTCattacctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070865-exon-scaffold_58-1491911889:1017873..1018034 | TCONS_00070865-exon-scaffold_58-1491911889:1017873..1018034 | Clytia hemisphaerica | exon |
| TCONS_00070865-exon-scaffold_58-1510915933:1017873..1018034 | TCONS_00070865-exon-scaffold_58-1510915933:1017873..1018034 | Clytia hemisphaerica | exon |
| TCONS_00070865-exon-scaffold_58-1575043694:1017873..1018034 | TCONS_00070865-exon-scaffold_58-1575043694:1017873..1018034 | Clytia hemisphaerica | exon |
| TCONS_00070865-exon-scaffold_58-1491911889:1018687..1020102 | TCONS_00070865-exon-scaffold_58-1491911889:1018687..1020102 | Clytia hemisphaerica | exon |
| TCONS_00070865-exon-scaffold_58-1510915933:1018687..1020102 | TCONS_00070865-exon-scaffold_58-1510915933:1018687..1020102 | Clytia hemisphaerica | exon |
| TCONS_00070865-exon-scaffold_58-1575043694:1018687..1020102 | TCONS_00070865-exon-scaffold_58-1575043694:1018687..1020102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1017873..1020102 + |
Blast
The following BLAST results are available for this feature:
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